IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1084	 51.70	0	926011..926304	-	97	18312727	-	PAE1577	-	NADH-ubiquinone oxidoreductase subunit
1085	 48.83	0	926301..926726	-	141	18312728	-	PAE1578	-	NADH-ubiquinone oxidoreductase subunit
1086	 44.87	-1	926827..927294	-	155	18312729	-	PAE1580	-	NADH dehydrogenase subunit I
1087	 51.05	0	927291..928340	-	349	18312730	-	PAE1581	-	NADH dehydrogenase subunit H
1088	 54.29	0	928350..929642	-	430	18312731	-	PAE1582	-	NADH dehydrogenase subunit D
1089	 57.41	+1	929707..929976	-	89	18312732	-	PAE1583	-	paREP2a
1090	 56.72	+1	930068..930982	+	304	18312733	-	PAE1584	-	hypothetical protein
1091	 56.37	0	931046..931249	+	67	18312734	-	PAE1585	-	paREP10, authentic frameshift
1092	 53.37	0	931404..931967	+	187	18312735	folE	PAE1588	-	GTP cyclohydrolase I
1093	 58.07	+1	931964..932638	+	224	18312736	-	PAE1589	-	3-oxoacyl-(acyl carrier protein) reductase
1094	 50.76	0	932586..933836	-	416	18312737	-	PAE1590	-	hypothetical protein
1095	 45.01	-1	934041..934511	+	156	18312738	-	PAE1592	-	transcriptional regulatory protein, conjectural
1096	 47.58	0	934535..935215	-	226	18312739	-	PAE1595	-	hypothetical protein
1097	 49.66	0	935287..937755	+	822	18312740	-	PAE1597	-	aminopeptidase
1098	 52.04	0	937761..938396	+	211	18312741	upp	PAE1598	-	uracil phosphoribosyltransferase
1099	 49.18	0	938361..938972	-	203	18312742	-	PAE1599	-	hypothetical protein
1100	 51.39	0	939053..939412	-	119	18312743	-	PAE1600	-	paREP2b
1101	 61.03	+1	939419..939613	-	64	18312744	-	PAE1602	-	paREP2b
1102	 47.02	0	939589..939756	-	55	18312745	-	PAE1604	-	paREP2b
1103	 58.33	+1	939810..939941	-	43	18312746	-	PAE1605	-	paREP2b
1104	 48.15	0	939963..940070	-	35	18312747	-	PAE1606	-	paREP2b
1105	 53.76	0	940116..940208	+	30	18312748	-	PAE1607	-	paREP2a
1106	 55.99	0	940301..940609	+	102	18312749	-	PAE1608	-	paREP2a
1107	 50.28	0	940791..941699	-	302	18312750	-	PAE1610	-	bifunctional phosphoglucose/phosphomannose isomerase
1108	 49.52	0	941716..943704	+	662	18312751	-	PAE1611	-	helicase, DNA repair rad25
1109	 46.07	-1	943701..944273	-	190	18312752	-	PAE1612	-	hypothetical protein
1110	 42.71	-1	944390..945061	+	223	18312753	-	PAE1613	-	hypothetical protein
1111	 44.44	-1	945066..945353	+	95	18312754	-	PAE1614	-	hypothetical protein
1112	 42.86	-1	945687..945854	-	55	18312755	-	PAE1616	-	hypothetical protein
1113	 48.78	0	946044..948989	+	981	18312756	-	PAE1617	-	isoleucyl-tRNA synthetase
1114	 53.33	0	948996..949355	-	119	18312757	-	PAE1618	-	paREP2a
1115	 52.36	0	949465..950037	+	190	18312758	-	PAE1619	-	paREP2b
1116	 57.16	+1	950034..950696	+	220	18312759	-	PAE1621	-	paREP2b
1117	 50.34	0	951062..952225	+	387	18312760	-	PAE1623	-	hypothetical protein
1118	 50.27	0	952209..952580	-	123	18312761	-	PAE1624	-	hypothetical protein
1119	 53.11	0	952600..953307	+	235	18312762	-	PAE1625	-	hypothetical protein
1120	 45.74	-1	953390..953905	-	171	18312763	-	PAE1626	-	hypothetical protein
1121	 46.75	0	954039..954791	+	250	18312764	-	PAE1627	-	hypothetical protein
1122	 50.00	0	954788..955879	+	363	18312765	-	PAE1628	-	N(2),N(2)-dimethylguanosine tRNA methyltransferase
1123	 47.62	0	955876..956400	+	174	18312766	-	PAE1629	-	adenylate kinase, conjectural
1124	 52.94	0	956462..956665	+	67	18312767	-	PAE1630	-	paREP2b
1125	 52.08	0	956705..957136	+	143	18312768	-	PAE1632	-	hypothetical protein
1126	 49.93	0	957301..957981	-	226	18312769	-	PAE1634	-	hypothetical protein
1127	 44.41	-1	957978..958970	-	330	18312770	-	PAE1635	-	hypothetical protein
1128	 39.49	-2	958970..959959	-	329	18312771	-	PAE1636	-	hypothetical protein
1129	 47.34	0	960064..960777	+	237	18312772	-	PAE1638	-	hypothetical protein
1130	 49.58	0	960778..961257	-	159	18312773	-	PAE1639	-	ribosomal protein L13
1131	 36.86	-2	961333..961644	+	103	18312774	-	PAE1641	-	hypothetical protein
1132	 29.50	-2	961646..961984	-	112	18312775	-	PAE1642	-	hypothetical protein
1133	 42.54	-1	961981..962295	-	104	18312776	-	PAE1643	-	hypothetical protein
1134	 50.90	0	962325..963326	-	333	18312777	tfb	PAE1645	-	transcription initiation factor IIB
1135	 49.79	0	963394..964353	-	319	18312778	rfc	PAE1646	-	replication factor C small subunit
1136	 46.00	-1	964350..964799	-	149	18312779	-	PAE1647	-	hypothetical protein
1137	 50.00	0	964792..965961	-	389	18312780	-	PAE1649	-	GTP-binding protein
1138	 41.63	-1	965984..966694	-	236	18312781	-	PAE1650	-	enoyl-CoA hydratase,
1139	 49.55	0	966720..968039	+	439	18312782	-	PAE1651	-	isocitrate dehydrogenase
1140	 44.51	-1	968042..968515	-	157	18312783	-	PAE1652	-	N-acyltransferase
1141	 42.03	-1	968659..969543	-	294	18312784	-	PAE1653	-	hypothetical protein
1142	 54.00	0	969597..972524	-	975	18312785	-	PAE1656	-	paREP2b
1143	 56.75	+1	972652..973680	-	342	18312786	-	PAE1657	-	paREP2b
1144	 52.87	0	973781..974215	+	144	18312787	-	PAE1658	-	paREP2a
1145	 49.21	0	974301..975245	-	314	18312788	-	PAE1659	-	C-5 cytosine-specific DNA methylase
1146	 47.04	0	975494..976084	+	196	18312789	-	PAE1662	-	hypothetical protein
1147	 44.22	-1	976071..976364	-	97	18312790	-	PAE1663	-	hypothetical protein
1148	 57.31	+1	976417..976587	-	56	18312791	-	PAE1665	-	paREP2b
1149	 57.94	+1	976685..976810	+	41	18312792	-	PAE1667	-	paREP2a
1150	 50.88	0	976823..977050	+	75	18312793	-	PAE1668	-	paREP2a
1151	 50.65	0	977064..978611	+	515	18312794	pheT	PAE1669	-	phenylalanyl-tRNA synthetase subunit beta
1152	 46.11	-1	978642..979001	+	119	18312795	-	PAE1670	-	hypothetical protein
1153	 52.34	0	979203..981128	-	641	18312796	-	PAE1671	-	paREP2b
1154	 54.05	0	981274..981384	+	36	18312797	-	PAE1672	-	paREP2a
1155	 54.44	0	981371..982204	+	277	18312798	-	PAE1673	-	paREP2a
1156	 47.44	0	982330..982563	-	77	18312799	-	PAE1674	-	hypothetical protein
1157	 51.81	0	982745..983020	-	91	18312800	-	PAE1676	-	hypothetical protein
1158	 52.10	0	983017..983421	-	134	18312801	-	PAE1677	-	hypothetical protein
1159	 49.10	0	983418..983861	-	147	18312802	-	PAE1678	-	hypothetical protein
1160	 51.92	0	983907..984557	+	216	18312803	-	PAE1679	-	D-arabino 3-hexulose 6-phosphate formaldehyde lyase, conjectural
1161	 46.46	-1	984569..985162	+	197	18312804	-	PAE1681	-	adenylate kinase
1162	 46.45	-1	985368..985931	+	187	18312805	-	PAE1683	-	hypothetical protein
1163	 50.73	0	985918..986946	+	342	18312806	-	PAE1685	-	glycerol dehydrogenase (gldA)
1164	 35.05	-2	987492..987899	-	135	18312807	-	PAE1687	-	hypothetical protein
1165	 50.65	0	987941..989245	+	434	18312808	-	PAE1688	-	malate oxidoreductase (mae)
1166	 49.76	0	989250..990479	-	409	18312809	-	PAE1689	-	citrate synthase
1167	 52.82	0	990607..991191	-	194	18312810	-	PAE1690	-	hypothetical protein
1168	 49.22	0	991230..992582	+	450	18312811	-	PAE1693	-	TBP-interacting protein TIP49
1169	 43.16	-1	992574..993041	-	155	18312812	-	PAE1694	-	hypothetical protein
1170	 50.00	0	993043..994224	-	393	18312813	-	PAE1695	-	paREP2b
1171	 43.16	-1	994202..994486	-	94	18312814	-	PAE1696	-	paREP2b
1172	 58.05	+1	994558..994905	+	115	18312815	-	PAE1698	-	paREP2a
1173	 49.17	0	995070..996578	-	502	18312816	-	PAE1702	-	hypothetical protein
1174	 51.66	0	996617..997189	-	190	18312817	-	PAE1703	-	hypothetical protein
1175	 49.17	0	997444..997563	-	39	18312818	-	PAE1704	-	hypothetical protein
1176	 52.18	0	997704..999581	-	625	18312819	-	PAE1706	-	paREP2b
1177	 52.38	0	999581..999664	+	27	18312820	-	PAE1707	-	paREP2a
1178	 49.06	0	999677..999835	+	52	18312821	-	PAE1708	-	paREP2a
1179	 50.54	0	999789..1000067	+	92	18312822	-	PAE1709	-	paREP2a
1180	 42.94	-1	1000064..1000750	+	228	18312823	-	PAE1710	-	hypothetical protein
1181	 55.56	0	1000739..1001071	-	110	18312824	rpl12p	PAE1712	-	50S ribosomal protein L12P
1182	 48.04	0	1001115..1001318	-	67	18312825	-	PAE1714	-	ribosomal protein L38
1183	 62.98	+2	1001462..1002004	-	180	18312826	-	PAE1715	-	hypothetical protein
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.