IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1001	 49.16	0	858908..859204	+	98	18312644	-	PAE1449	-	hypothetical protein
1002	 52.22	0	859201..860418	-	405	18312645	-	PAE1451	-	hypothetical protein
1003	 54.05	0	860454..860786	-	110	18312646	-	PAE1453	-	hypothetical protein
1004	 47.71	0	860907..861059	-	50	18312647	-	PAE1454	-	paREP2a
1005	 54.70	0	861206..861322	-	38	18312648	-	PAE1456	-	paREP2a
1006	 56.06	0	861572..861769	-	65	18312649	-	PAE1459	-	paREP9, associated with SRSRs, authentic frameshift
1007	 57.18	+1	861756..862166	-	136	18312650	-	PAE1461	-	hypothetical protein
1008	 51.63	0	862318..862809	+	163	18312651	-	PAE1463	-	hypothetical protein
1009	 57.75	+1	862928..863140	+	70	18312652	-	PAE1465	-	hypothetical protein
1010	 55.89	0	863204..863806	+	200	18312653	-	PAE1467	-	hypothetical protein
1011	 56.00	0	863842..863991	+	49	18312654	-	PAE1469	-	hypothetical protein
1012	 55.95	0	864812..865492	+	226	18312655	-	PAE1472	-	acetyl/acyl transferase related protein
1013	 56.75	+1	865533..866480	-	315	18312656	-	PAE1474	-	aminopeptidase
1014	 59.76	+1	866541..867206	+	221	18312657	-	PAE1476	-	purine nucleoside phosphorylase
1015	 49.12	0	867201..868841	-	546	18312658	-	PAE1478	-	hypothetical protein
1016	 53.36	0	869374..870267	+	297	18312659	-	PAE1479	-	hypothetical protein
1017	 54.09	0	870314..870472	+	52	18312660	-	PAE1480	-	paREP10
1018	 56.49	0	870482..871051	-	189	18312661	-	PAE1481	-	phenylacrylic acid decarboxylase-like protein
1019	 56.40	0	871038..871748	-	236	18312662	-	PAE1483	-	hypothetical protein
1020	 46.59	0	871783..872031	+	82	18312663	-	PAE1484	-	hypothetical protein
1021	 52.55	0	872242..873063	+	273	18312664	-	PAE1486	-	hypothetical protein
1022	 51.71	0	873060..873527	-	155	18312665	-	PAE1488	-	hypothetical protein
1023	 51.40	0	873607..874215	-	202	18312666	-	PAE1489	-	hypothetical protein
1024	 54.50	0	874244..874621	-	125	18312667	-	PAE1490	-	S-adenosylmethionine decarboxylase proenzyme
1025	 51.24	0	875704..876267	+	187	18312668	-	PAE1496	-	hypothetical protein
1026	 53.76	0	876267..876452	+	61	18312669	-	PAE1497	-	hypothetical protein
1027	 54.21	0	876500..879124	+	874	18312670	-	PAE1499	-	aconitate hydratase
1028	 52.42	0	879150..879479	+	109	18312671	-	PAE1500	-	hypothetical protein
1029	 57.89	+1	879522..880205	+	227	18312672	-	PAE1501	-	triosephosphate isomerase
1030	 53.41	0	880260..880538	-	92	18312673	-	PAE1502	-	hypothetical protein
1031	 57.34	+1	880606..880959	+	117	18312674	-	PAE1503	-	hypothetical protein
1032	 53.02	0	881616..882062	+	148	18312675	-	PAE1505	-	30S ribosomal protein S6e
1033	 41.56	-1	882063..882305	-	80	18312676	-	PAE1507	-	AsnC family transcriptional regulator
1034	 44.44	-1	882379..882468	+	29	18312677	-	PAE1507a	-	hypothetical protein
1035	 51.24	0	882559..882759	+	66	18312678	-	PAE1509	-	hypothetical protein
1036	 53.94	0	882804..883133	+	109	18312679	-	PAE1511	-	hypothetical protein
1037	 54.07	0	883670..885439	-	589	18312680	-	PAE1513	-	translation initiation factor IF-2
1038	 55.49	0	885579..886106	-	175	18312681	-	PAE1514	-	paREP2b
1039	 57.05	+1	886245..886712	+	155	18312682	-	PAE1515	-	paREP8
1040	 49.44	0	886809..886988	+	59	18312683	-	PAE1516	-	hypothetical protein
1041	 48.56	0	886977..887357	-	126	18312684	-	PAE1517	-	hypothetical protein
1042	 50.47	0	887414..887839	+	141	18312685	-	PAE1518	-	hypothetical protein
1043	 56.80	+1	887836..888798	+	320	18312686	-	PAE1519	-	hypothetical protein
1044	 47.62	0	888877..889023	-	48	18312687	-	PAE1521	-	hypothetical protein
1045	 50.68	0	889095..889970	+	291	18312688	-	PAE1522	-	hypothetical protein
1046	 49.39	0	890115..890687	+	190	18312689	-	PAE1523	-	hypothetical protein
1047	 56.00	0	890814..892013	+	399	18312690	-	PAE1525	-	Glu-tRNA(Gln) amidotransferase subunit A (gatA)
1048	 53.11	0	891995..892798	-	267	18312691	-	PAE1526	-	hypothetical protein
1049	 49.65	0	893088..894227	+	379	18312692	-	PAE1528	-	hypothetical protein
1050	 51.77	0	894220..894642	+	140	18312693	-	PAE1529	-	hypothetical protein
1051	 52.25	0	894675..895007	+	110	18312694	-	PAE1530	-	hypothetical protein
1052	 54.47	0	895567..896304	-	245	18312695	-	PAE1534	-	hypothetical protein
1053	 52.04	0	896383..896970	-	195	18312696	-	PAE1536	-	hypothetical protein
1054	 53.54	0	897242..898483	-	413	18312697	-	PAE1538	-	hypothetical protein
1055	 57.37	+1	898499..899122	+	207	18312698	-	PAE1540	-	metallo-beta-lactamase superfamily protein
1056	 51.27	0	899142..899810	+	222	18312699	-	PAE1541	-	hypothetical protein
1057	 52.48	0	899835..900863	+	342	18312700	-	PAE1543	-	hypothetical protein
1058	 50.00	0	900886..901053	+	55	18312701	-	PAE1544	-	hypothetical protein
1059	 49.69	0	901077..901889	+	270	18312702	-	PAE1545	-	hypothetical protein
1060	 41.75	-1	901925..902221	-	98	18312703	-	PAE1546	-	hypothetical protein
1061	 42.47	-1	902288..903130	+	280	18312704	-	PAE1547	-	mttB family membrane protein
1062	 53.14	0	903115..903957	-	280	18312705	-	PAE1548	-	hypothetical protein
1063	 57.38	+1	903988..904353	+	121	18312706	-	PAE1549	-	hypothetical protein
1064	 51.85	0	904382..905488	+	368	18312707	-	PAE1550	-	transport protein, conjectural
1065	 54.29	0	905509..906405	+	298	18312708	-	PAE1552	-	carbamate kinase
1066	 49.44	0	906402..907661	-	419	18312709	-	PAE1553	-	histidyl-tRNA synthetase
1067	 54.08	0	907658..908698	-	346	18312710	-	PAE1554	-	saccharopine dehydrogenase, conjectural
1068	 56.18	0	908727..909746	-	339	18312711	-	PAE1555	-	dolichol-phosphate mannosyltransferase
1069	 49.81	0	909834..910859	+	341	18312712	-	PAE1557	-	hypothetical protein
1070	 51.85	0	910845..911735	-	296	18312713	-	PAE1558	-	2-oxoacid ferredoxin oxidoreductase subunit beta
1071	 53.84	0	911732..913360	-	542	18312714	-	PAE1559	-	2-oxoacid ferredoxin oxidoreductase alpha subunit
1072	 50.73	0	913458..913934	+	158	18312715	-	PAE1560	-	hypothetical protein
1073	 49.32	0	913961..914548	-	195	18312716	-	PAE1561	-	nucleoside diphosphate kinase (ndk)
1074	 57.82	+1	914536..914682	-	48	18312717	-	PAE1562	-	paREP2a
1075	 50.33	0	914689..914994	-	101	18312718	-	PAE1563	-	paREP2a
1076	 52.83	0	915219..918680	+	1153	18312719	-	PAE1564	-	paREP2b
1077	 54.00	0	918884..920122	-	412	18312720	-	PAE1567	-	NADH-ubiquinone oxidoreductase subunit
1078	 51.89	0	920119..921972	-	617	18312721	-	PAE1568	-	NADH-ubiquinone oxidoreductase subunit
1079	 56.48	0	922008..922115	-	35	18312722	-	PAE1570	-	paREP2a
1080	 56.62	+1	922102..922947	-	281	18312723	-	PAE1571	-	paREP2a
1081	 50.52	0	922937..923320	-	127	18312724	-	PAE1573	-	paREP2a
1082	 54.47	0	923330..924526	+	398	18312725	-	PAE1574	-	paREP2b
1083	 52.70	0	924569..926014	-	481	18312726	-	PAE1576	-	NADH-ubiquinone oxidoreductase subunit
1084	 51.70	0	926011..926304	-	97	18312727	-	PAE1577	-	NADH-ubiquinone oxidoreductase subunit
1085	 48.83	0	926301..926726	-	141	18312728	-	PAE1578	-	NADH-ubiquinone oxidoreductase subunit
1086	 44.87	-1	926827..927294	-	155	18312729	-	PAE1580	-	NADH dehydrogenase subunit I
1087	 51.05	0	927291..928340	-	349	18312730	-	PAE1581	-	NADH dehydrogenase subunit H
1088	 54.29	0	928350..929642	-	430	18312731	-	PAE1582	-	NADH dehydrogenase subunit D
1089	 57.41	+1	929707..929976	-	89	18312732	-	PAE1583	-	paREP2a
1090	 56.72	+1	930068..930982	+	304	18312733	-	PAE1584	-	hypothetical protein
1091	 56.37	0	931046..931249	+	67	18312734	-	PAE1585	-	paREP10, authentic frameshift
1092	 53.37	0	931404..931967	+	187	18312735	folE	PAE1588	-	GTP cyclohydrolase I
1093	 58.07	+1	931964..932638	+	224	18312736	-	PAE1589	-	3-oxoacyl-(acyl carrier protein) reductase
1094	 50.76	0	932586..933836	-	416	18312737	-	PAE1590	-	hypothetical protein
1095	 45.01	-1	934041..934511	+	156	18312738	-	PAE1592	-	transcriptional regulatory protein, conjectural
1096	 47.58	0	934535..935215	-	226	18312739	-	PAE1595	-	hypothetical protein
1097	 49.66	0	935287..937755	+	822	18312740	-	PAE1597	-	aminopeptidase
1098	 52.04	0	937761..938396	+	211	18312741	upp	PAE1598	-	uracil phosphoribosyltransferase
1099	 49.18	0	938361..938972	-	203	18312742	-	PAE1599	-	hypothetical protein
1100	 51.39	0	939053..939412	-	119	18312743	-	PAE1600	-	paREP2b
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.