IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.51   STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
53	 53.70	0	42327..42704	-	125	18311696	-	PAE0078	-	paREP9, associated with SRSRs
54	 57.36	+1	42689..43204	-	171	18311697	-	PAE0079	-	hypothetical protein
55	 53.82	0	43194..43481	-	95	18311698	-	PAE0080	-	hypothetical protein
56	 59.19	+1	43478..44386	-	302	18311699	-	PAE0081	-	hypothetical protein
57	 59.52	+1	44370..45236	-	288	18311700	-	PAE0082	-	hypothetical protein
58	 61.27	+1	46700..46903	+	67	18311701	-	PAE0084	-	hypothetical protein
59	 60.74	+1	46970..47239	+	89	18311702	-	PAE0086	-	hypothetical protein
60	 61.97	+2	47280..47747	+	155	18311703	-	PAE0087	-	hypothetical protein
61	 60.45	+1	47753..48766	-	337	18311704	-	PAE0088	-	hypothetical protein
62	 56.46	0	48829..48975	-	48	18311705	-	PAE0089	-	hypothetical protein
63	 57.94	+1	48972..50060	-	362	18311706	-	PAE0090	-	hypothetical protein
64	 54.08	0	50152..51057	+	301	18311707	-	PAE0091	-	hypothetical protein
65	 54.28	0	51724..52272	+	182	18311708	-	PAE0096	-	paREP1
66	 40.61	-2	52315..52836	-	173	18311709	-	PAE0097	-	hypothetical protein
67	 53.96	0	52814..53797	-	327	18311710	-	PAE0098	-	hypothetical protein
68	 46.49	-1	54121..54348	+	75	18311711	-	PAE0100	-	hypothetical protein
69	 48.56	0	54323..54703	+	126	18311712	-	PAE0101	-	hypothetical protein
70	 51.25	0	54939..55859	+	306	18311713	-	PAE0103	-	hypothetical protein
71	 40.99	-2	56086..56712	+	208	18311714	-	PAE0105	-	hypothetical protein
72	 32.52	-2	56712..57329	+	205	18311715	-	PAE0106	-	hypothetical protein
73	 53.49	0	57434..57805	-	123	18311716	-	PAE0108	-	hypothetical protein
74	 54.74	0	57805..60177	-	790	18311717	-	PAE0109	-	hypothetical protein
75	 55.73	0	60164..61096	-	310	18311718	-	PAE0111	-	hypothetical protein
76	 56.72	+1	61084..61968	-	294	18311719	-	PAE0112	-	hypothetical protein
77	 52.32	0	61965..62891	-	308	18311720	-	PAE0114	-	hypothetical protein
78	 51.90	0	62888..63334	-	148	18311721	-	PAE0115	-	hypothetical protein
79	 55.99	0	63419..64411	+	330	18311722	-	PAE0116	-	hypothetical protein
80	 57.93	+1	64616..66046	-	476	18311723	-	PAE0117	-	hypothetical protein
81	 46.27	-1	66135..66389	+	84	18311724	-	PAE0118	-	hypothetical protein
82	 61.29	+1	66414..68069	+	551	18311725	-	PAE0119	-	hypothetical protein
83	 49.72	0	68073..68603	-	176	18311726	-	PAE0120	-	hypothetical protein
84	 48.59	0	68735..69724	-	329	18311727	-	PAE0121	-	hypothetical protein
85	 62.51	+2	69828..70814	+	328	18311728	-	PAE0122	-	hypothetical protein
86	 59.55	+1	71097..71363	+	88	18311729	-	PAE0124	-	hypothetical protein
87	 59.14	+1	71374..72024	+	216	18311730	-	PAE0126	-	hypothetical protein
88	 60.26	+1	72118..73725	+	535	18311731	-	PAE0128	-	hypothetical protein
89	 59.11	+1	73722..74171	+	149	18311732	-	PAE0129	-	hypothetical protein
90	 60.85	+1	74251..74508	+	85	18311733	-	PAE0131	-	hypothetical protein
91	 51.93	0	74890..75330	-	146	18311734	-	PAE0133	-	hypothetical protein
92	 54.43	0	75306..75926	-	206	18311735	-	PAE0134	-	hypothetical protein
93	 56.80	+1	75923..76297	-	124	18311736	-	PAE0135	-	hypothetical protein
94	 55.26	0	76373..76714	-	113	18311737	-	PAE0137	-	hypothetical protein
95	 48.89	0	77136..77405	-	89	18311738	-	PAE0138	-	hypothetical protein
96	 60.75	+1	77455..77640	+	61	18311739	-	PAE0139	-	hypothetical protein
97	 52.54	0	77664..77840	-	58	18311740	-	PAE0141	-	hypothetical protein
98	 48.90	0	77849..78304	+	151	18311741	-	PAE0142	-	paREP5a
99	 52.92	0	78314..78655	+	113	18311742	-	PAE0143	-	paREP5b
100	 56.34	0	78825..79163	-	112	18311743	-	PAE0144	-	hypothetical protein
101	 61.89	+2	79166..80065	-	299	18311744	-	PAE0146	-	hypothetical protein
102	 52.58	0	80100..81050	-	316	18311745	-	PAE0148	-	hypothetical protein
103	 50.69	0	81485..81628	+	47	18311746	-	PAE0150	-	hypothetical protein
104	 57.32	+1	81756..82151	-	131	18311747	-	PAE0151	-	hypothetical protein
105	 53.42	0	82135..82368	-	77	18311748	-	PAE0152	-	hypothetical protein
106	 53.29	0	82432..83343	-	303	18311749	-	PAE0153	-	hypothetical protein
107	 51.67	0	83334..83693	-	119	18311750	-	PAE0154	-	hypothetical protein
108	 56.94	+1	83923..84066	+	47	18311751	-	PAE0157	-	hypothetical protein
109	 57.43	+1	84063..84311	-	82	18311752	-	PAE0158	-	hypothetical protein
110	 55.56	0	84327..84497	-	56	18311753	-	PAE0160	-	hypothetical protein
111	 61.60	+2	84923..85396	+	157	18311754	-	PAE0163	-	mutT/nudix family protein
112	 55.77	0	85425..86489	+	354	18311755	-	PAE0164	-	tRNA-modifying enzyme
113	 43.06	-1	86646..86717	+	23	18311756	-	PAE0164a	-	hypothetical protein
114	 51.01	0	86727..87071	+	114	18311757	-	PAE0165	-	hypothetical protein
115	 56.99	+1	87061..87432	+	123	18311758	-	PAE0166	-	paREP11
116	 54.04	0	87429..87824	-	131	18311759	-	PAE0167	-	hypothetical protein
117	 53.18	0	87794..88186	-	130	18311760	-	PAE0168	-	hypothetical protein
118	 57.43	+1	88245..88883	+	212	18311761	-	PAE0170	-	hypothetical protein
119	 55.89	0	88870..89463	+	197	18311762	-	PAE0171	-	hypothetical protein
120	 57.54	+1	89519..90745	+	408	18311763	-	PAE0172	-	hypothetical protein
121	 53.99	0	90760..90972	-	70	18311764	-	PAE0173	-	ribosomal protein L24, conjectural
122	 58.14	+1	90956..91741	-	261	18311765	-	PAE0175	-	ribulose-1,5-biphosphate synthetase
123	 60.77	+1	91828..93081	+	417	18311766	-	PAE0176	-	metabolite transport protein
124	 56.46	0	93173..93466	+	97	18311767	-	PAE0178	-	hypothetical protein
125	 55.21	0	93587..94363	+	258	18311768	-	PAE0180	-	hypothetical protein
126	 64.51	+2	94405..95193	-	262	18311769	-	PAE0181	-	hypothetical protein
127	 58.12	+1	101069..101641	-	190	18311770	-	PAE0198	-	hypothetical protein
128	 51.09	0	101625..101900	-	91	18311771	-	PAE0199	-	hypothetical protein
129	 61.04	+1	101888..102775	-	295	18311772	-	PAE0200	-	hypothetical protein
130	 59.01	+1	102756..103604	-	282	18311773	-	PAE0201	-	hypothetical protein
131	 49.83	0	103683..104288	+	201	18311774	-	PAE0202	-	hypothetical protein
132	 44.04	-1	104858..105754	-	298	18311775	-	PAE0204	-	hypothetical protein
133	 51.15	0	105739..106782	-	347	18311776	-	PAE0205	-	hypothetical protein
134	 56.90	+1	106776..107543	-	255	18311777	-	PAE0207	-	hypothetical protein
135	 49.49	0	107626..109290	-	554	18311778	-	PAE0208	-	helicase,
136	 57.29	+1	109280..109972	-	230	18311779	-	PAE0209	-	hypothetical protein
137	 52.04	0	109969..110946	-	325	18311780	-	PAE0210	-	hypothetical protein
138	 54.37	0	110950..111372	-	140	18311781	-	PAE0211	-	hypothetical protein
139	 58.82	+1	111782..112546	+	254	18311782	-	PAE0212	-	hypothetical protein
140	 56.17	0	112713..113093	-	126	18311783	-	PAE0213	-	hypothetical protein
141	 55.97	0	113166..113483	-	105	18311784	-	PAE0214	-	hypothetical protein
142	 54.18	0	113621..114325	-	234	18311785	-	PAE0215	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
143	 58.00	+1	114440..115882	+	480	18311786	-	PAE0216	-	phosphoribosylamine--glycine ligase
144	 58.75	+1	115885..117021	+	378	18311787	-	PAE0218	-	amidophosphoribosyltransferase (purF)
145	 57.58	+1	117018..117842	+	274	18311788	-	PAE0219	-	phosphoribosylglycinamide formyltransferase
146	 53.85	0	117827..118762	+	311	18311789	-	PAE0220	-	methylenetetrahydrofolate dehydrogenase (folD)
147	 58.52	+1	118752..119684	+	310	18311790	-	PAE0221	-	phosphoribosylaminoimidazole synthetase
148	 61.35	+1	119681..120319	-	212	18311791	-	PAE0222	-	phosphoribosylformylglycinamidine synthase I (FGAM synthase I) (purQ)
149	 56.47	0	120316..120570	-	84	18311792	-	PAE0224	-	hypothetical protein
150	 60.36	+1	120715..122808	+	697	18311793	-	PAE0225	-	phosphoribosylformylglycinamidine synthase II
151	 62.23	+2	122811..124073	+	420	18311794	-	PAE0226	-	amidophosphoribosyltransferase (purF)
152	 60.31	+1	124112..124504	+	130	18311795	-	PAE0227	-	hypothetical protein
51.51	MEAN

5.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.