IslandPath Analysis: Pseudomonas syringae pv. syringae B728a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.35   STD DEV: 4.19
Pseudomonas syringae pv. syringae B728a, complete genome - 1..6093698
5089 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
49	 65.40	+1	49110..51008	-	632	66043320	-	Psyr_0049	-	cytochrome c, class I:Iron permease FTR1
50	 61.61	0	51165..51797	-	210	66043321	-	Psyr_0050	-	lysine exporter protein LysE/YggA
51	 62.96	0	51865..52458	-	197	66043322	-	Psyr_0051	-	hypothetical protein
52	 63.32	0	52475..54385	-	636	66043323	-	Psyr_0052	-	ABC transporter
53	 61.22	0	54432..54908	+	158	66043324	-	Psyr_0053	-	hypothetical protein
54	 62.83	0	54905..55921	-	338	66043325	-	Psyr_0054	-	alginate regulatory protein AlgR3
55	 63.42	0	56138..56815	+	225	66043326	-	Psyr_0055	-	FKBP-type peptidyl-prolyl isomerase, N-terminal:peptidylprolyl isomerase, FKBP-type
56	 57.17	0	56893..57366	-	157	161486741	-	Psyr_0056	-	anti-RNA polymerase sigma 70 factor
57	 56.21	0	57384..57536	-	50	66043328	-	Psyr_0057	-	hypothetical protein
58	 60.42	0	57541..58068	-	175	66043329	-	Psyr_0058	-	disulfide bond formation protein DsbB
59	 63.05	0	58285..59529	-	414	66043330	-	Psyr_0059	-	HemY, N-terminal:HemY, N-terminal:HemY, N-terminal
60	 63.18	0	59526..60701	-	391	66043331	-	Psyr_0060	-	hypothetical protein
61	 63.82	+1	60701..61474	-	257	66043332	-	Psyr_0061	-	uroporphyrinogen-III synthase
62	 63.80	+1	61471..62412	-	313	66043333	hemC	Psyr_0062	-	porphobilinogen deaminase
63	 61.85	0	62645..63391	-	248	66043334	-	Psyr_0063	-	response regulator receiver:LytTr DNA-binding region
64	 58.54	0	63388..64470	-	360	66043335	-	Psyr_0064	-	histidine kinase internal region
65	 62.87	0	64605..65999	+	464	66043336	-	Psyr_0065	-	argininosuccinate lyase
66	 63.53	0	66405..67646	+	413	66043337	-	Psyr_0066	-	bifunctional spore maturation protein, fused SpmA/SpmB
67	 61.56	0	67651..68844	-	397	66043338	-	Psyr_0067	-	hypothetical protein
68	 61.37	0	68941..70317	-	458	66043339	-	Psyr_0068	-	insulinase-like:peptidase M16, C-terminal
69	 62.37	0	70375..72027	-	550	66043340	-	Psyr_0069	-	Na+/Pi-cotransporter:Na/Pi cotransporter II-related
70	 60.67	0	72227..73060	+	277	66043341	-	Psyr_0070	-	hypothetical protein
71	 62.27	0	72996..74972	-	658	66043342	-	Psyr_0071	-	histidine kinase, HAMP region: chemotaxis sensory transducer
72	 61.13	0	75159..76079	-	306	66043343	-	Psyr_0072	-	regulatory protein, LysR:LysR, substrate-binding
73	 64.06	+1	76238..77620	+	460	66043344	-	Psyr_0073	-	multidrug efflux protein NorA
74	 63.66	+1	77633..79297	-	554	66043345	-	Psyr_0074	-	GGDEF
75	 60.55	0	79502..81511	+	669	66043346	-	Psyr_0075	-	ATP-dependent DNA helicase RepA
76	 59.82	0	81563..82132	+	189	66043347	-	Psyr_0076	-	xanthine phosphoribosyltransferase
77	 64.09	+1	82724..84043	-	439	66043348	-	Psyr_0077	-	helix-turn-helix, Fis-type
78	 61.36	0	84310..85194	+	294	66043349	-	Psyr_0078	-	Beta-lactamase-like
79	 64.83	+1	85222..86475	+	417	66043350	-	Psyr_0079	-	hypothetical protein
80	 65.68	+1	86468..87280	+	270	66043351	-	Psyr_0080	-	hypothetical protein
81	 62.69	0	87481..88461	-	326	66043352	-	Psyr_0081	-	ABC transporter
82	 61.86	0	88464..89336	-	290	66043353	-	Psyr_0082	-	binding-protein dependent transport system inner membrane protein
83	 63.50	0	89350..90171	-	273	66043354	-	Psyr_0083	-	binding-protein dependent transport system inner membrane protein
84	 59.05	0	90266..91276	-	336	66043355	-	Psyr_0084	-	extracellular solute-binding protein
85	 52.22	-1	91428..91607	-	59	66043356	-	Psyr_0085	-	hypothetical protein
86	 60.68	0	91808..93727	-	639	66043357	-	Psyr_0086	-	PAS:GGDEF
87	 59.75	0	93880..95064	+	394	66043358	-	Psyr_0087	-	Fatty acid desaturase
88	 61.01	0	95185..96192	+	335	66043359	-	Psyr_0088	-	PAS:GGDEF
89	 64.22	+1	96943..98331	-	462	66043360	-	Psyr_0089	-	response regulator receiver
90	 60.89	0	98488..99768	-	426	66043361	-	Psyr_0090	-	4-aminobutyrate aminotransferase
91	 62.37	0	99948..101390	-	480	66043362	gabD	Psyr_0091	-	succinate-semialdehyde dehydrogenase I
92	 60.53	0	101677..102312	-	211	66043363	-	Psyr_0092	-	lysine exporter protein LysE/YggA
93	 63.32	0	102358..103761	-	467	66043364	-	Psyr_0093	-	flavoprotein monooxygenase
94	 55.46	0	103896..104600	+	234	66043365	-	Psyr_0094	-	hypothetical protein
95	 56.59	0	104951..106369	-	472	66043366	-	Psyr_0095	-	transposase IS4
96	 55.79	0	106580..107563	-	327	66043367	-	Psyr_0096	-	transposase IS4
97	 39.53	-2	108211..109452	+	413	66043368	-	Psyr_0097	-	hypothetical protein
98	 43.22	-2	109452..111323	+	623	66043369	-	Psyr_0098	-	hypothetical protein
99	 43.81	-2	111332..111541	+	69	66043370	-	Psyr_0099	-	hypothetical protein
100	 49.06	-2	112435..112968	-	177	66043371	-	Psyr_0100	-	hypothetical protein
101	 50.30	-2	112987..113487	-	166	66043372	-	Psyr_0101	-	hypothetical protein
102	 42.71	-2	113906..114502	-	198	66043373	-	Psyr_0102	-	hypothetical protein
103	 50.26	-2	114514..114891	-	125	66043374	-	Psyr_0103	-	hypothetical protein
104	 46.68	-2	115713..116873	+	386	66043375	-	Psyr_0104	-	hypothetical protein
105	 56.69	0	116991..117812	-	273	66043376	-	Psyr_0105	-	integrase catalytic subunit
106	 57.00	0	117869..118168	-	99	66043377	-	Psyr_0106	-	transposase IS3/IS911
107	 52.46	-1	118370..118735	+	121	66043378	-	Psyr_0107	-	hypothetical protein
108	 58.06	0	118946..120304	+	452	66043379	-	Psyr_0108	-	major facilitator transporter
109	 42.02	-2	120719..121144	+	141	66043380	-	Psyr_0109	-	hypothetical protein
110	 51.81	-1	121508..122362	+	284	66043381	-	Psyr_0110	-	hypothetical protein
111	 47.92	-2	122362..122793	+	143	66043382	-	Psyr_0111	-	hypothetical protein
112	 50.52	-2	122810..123193	-	127	66043383	-	Psyr_0112	-	hypothetical protein
113	 47.76	-2	123930..124664	-	244	66043384	-	Psyr_0113	-	hypothetical protein
114	 54.75	-1	125003..125455	+	150	66043385	-	Psyr_0114	-	hypothetical protein
115	 61.57	0	125598..126362	+	254	66043386	-	Psyr_0115	-	hypothetical protein
116	 53.40	-1	126577..127209	-	210	66043387	-	Psyr_0116	-	lysine exporter protein LysE/YggA
117	 58.76	0	127274..128437	-	387	66043388	-	Psyr_0117	-	aminotransferase, class I and II
118	 53.09	-1	128434..129486	-	350	66043389	-	Psyr_0118	-	hypothetical protein
119	 58.50	0	130166..130936	+	256	66043390	-	Psyr_0120	-	Short-chain dehydrogenase/reductase SDR
120	 53.65	-1	131018..131647	-	209	66043391	-	Psyr_0121	-	regulatory protein, TetR
121	 51.90	-1	131737..132393	+	218	66043392	-	Psyr_0122	-	NAD(P)H dehydrogenase (quinone)
122	 55.84	0	132718..133539	+	273	66043393	-	Psyr_0123	-	Short-chain dehydrogenase/reductase SDR
123	 61.43	0	133779..135326	+	515	66043394	-	Psyr_0124	-	hemolysin-type calcium-binding region
124	 53.50	-1	135597..135953	+	118	66043395	-	Psyr_0125	-	hypothetical protein
125	 53.97	-1	135970..136410	+	146	66043396	-	Psyr_0126	-	hypothetical protein
126	 52.97	-1	136494..136931	+	145	66043397	-	Psyr_0127	-	glutathione-dependent formaldehyde-activating, GFA
127	 53.01	-1	137161..137526	+	121	66043398	-	Psyr_0128	-	hypothetical protein
128	 57.33	0	137656..137955	+	99	66043399	-	Psyr_0129	-	hypothetical protein
129	 53.69	-1	138083..138991	-	302	66043400	-	Psyr_0130	-	hypothetical protein
130	 58.37	0	139587..140261	+	224	66043401	-	Psyr_0131	-	HAD family hydrolase
131	 62.25	0	140362..140610	-	82	66043402	-	Psyr_0132	-	hypothetical protein
132	 60.72	0	140694..141164	-	156	66043403	-	Psyr_0133	-	helix-turn-helix, Fis-type
133	 62.54	0	142016..143203	+	395	66043404	-	Psyr_0134	-	aminotransferase, class V
134	 64.48	+1	144401..145225	+	274	66043405	-	Psyr_0135	-	TonB, C-terminal
135	 63.56	+1	145279..145986	+	235	66043406	-	Psyr_0136	-	MotA/TolQ/ExbB proton channel
136	 58.46	0	145986..146387	+	133	66043407	-	Psyr_0137	-	biopolymer transport protein ExbD/TolR
137	 60.92	0	146598..149312	+	904	66043408	-	Psyr_0138	-	TonB-dependent receptor:TonB-dependent receptor
138	 62.26	0	149457..151340	+	627	66043409	-	Psyr_0139	-	extracellular solute-binding protein
139	 61.70	0	151342..152409	+	355	66043410	-	Psyr_0140	-	binding-protein dependent transport system inner membrane protein
140	 63.83	+1	152409..153431	+	340	66043411	-	Psyr_0141	-	binding-protein dependent transport system inner membrane protein
141	 63.13	0	153433..155016	+	527	66043412	-	Psyr_0142	-	ABC transporter
142	 62.66	0	155026..156546	-	506	66043413	-	Psyr_0143	-	chemotaxis sensory transducer
143	 53.99	-1	157030..157518	-	162	66043414	-	Psyr_0144	-	regulatory proteins, AsnC/Lrp
144	 62.52	0	157566..158240	-	224	66043415	-	Psyr_0145	-	hypothetical protein
145	 62.38	0	158304..159608	-	434	66043416	-	Psyr_0146	-	4-aminobutyrate aminotransferase
146	 62.26	0	159893..160822	+	309	66043417	-	Psyr_0147	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
147	 58.75	0	160872..161111	+	79	66043418	-	Psyr_0148	-	hypothetical protein
148	 64.06	+1	161189..162646	-	485	66043419	-	Psyr_0149	-	succinic semialdehyde dehydrogenase
59.35	MEAN

4.19	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.