IslandPathversion 1.0

IslandPath Analysis: Pseudomonas syringae pv. syringae B728a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 59.35 STD DEV: 4.19
Pseudomonas syringae pv. syringae B728a, complete genome - 1..6093698
5089 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
737	 51.95	-1	856694..857875	-	393	66044008	-	Psyr_0753	-	hypothetical protein
738	 57.18	0	858095..859390	-	431	66044009	-	Psyr_0754	-	levansucrase
739	 59.41	0	860098..860538	-	146	66044010	-	Psyr_0755	-	hypothetical protein
740	 52.68	-1	860916..861716	+	266	66044011	trpC	Psyr_0756	-	indole-3-glycerol-phosphate synthase
741	 59.11	0	862009..863001	-	330	66044012	-	Psyr_0757	-	LacI transcriptional regulator
742	 60.73	0	863082..864563	-	493	66044013	-	Psyr_0758	-	sucrose-6-phosphate hydrolase
743	 61.07	0	864581..865723	-	380	66044014	-	Psyr_0759	-	ABC transporter:TOBE
744	 62.04	0	865754..866596	-	280	66044015	-	Psyr_0760	-	binding-protein dependent transport system inner membrane protein
745	 60.64	0	866593..867555	-	320	66044016	-	Psyr_0761	-	binding-protein dependent transport system inner membrane protein
746	 61.49	0	867577..868851	-	424	66044017	-	Psyr_0762	-	extracellular solute-binding protein
747	 60.01	0	869019..870596	+	525	66044018	-	Psyr_0763	-	porin, LamB type
748	 60.57	0	870682..871698	-	338	66044019	-	Psyr_0764	-	gluconolactonase
749	 60.53	0	871719..872288	-	189	66044020	-	Psyr_0765	-	hypothetical protein
750	 59.39	0	872345..872839	-	164	66044021	-	Psyr_0766	-	hypothetical protein
751	 62.65	0	872972..873892	+	306	66044022	-	Psyr_0767	-	regulatory protein, LysR:LysR, substrate-binding
752	 54.49	-1	874061..874216	+	51	66044023	-	Psyr_0768	-	hypothetical protein
753	 54.05	-1	874418..874861	-	147	66044024	-	Psyr_0769	-	hypothetical protein
754	 59.04	0	874876..875334	-	152	66044025	-	Psyr_0770	-	hypothetical protein
755	 63.25	0	875599..876741	-	380	66044026	-	Psyr_0771	-	peptidase M20:peptidase M20
756	 61.11	0	876754..877509	-	251	66044027	-	Psyr_0772	-	hypothetical protein
757	 62.01	0	877506..878621	-	371	66044028	-	Psyr_0773	-	aryldialkylphosphatase
758	 63.14	0	878618..879637	-	339	66044029	-	Psyr_0774	-	inner-membrane translocator
759	 62.42	0	879652..880428	-	258	66044030	-	Psyr_0775	-	ABC transporter
760	 61.06	0	880439..881383	-	314	66044031	-	Psyr_0776	-	periplasmic binding protein/LacI transcriptional regulator
761	 63.51	0	881642..882655	-	337	66044032	-	Psyr_0777	-	LacI transcriptional regulator
762	 53.60	-1	883323..885473	+	716	79093590	-	Psyr_0778	-	type III effector HopAG1
763	 57.94	0	885579..886862	+	427	66044034	-	Psyr_0779	-	type III effector HopAH1
764	 61.93	0	887924..889000	-	358	66044036	-	Psyr_0781	-	chemotaxis-specific methylesterase
765	 58.24	0	888963..889496	-	177	66044037	-	Psyr_0782	-	chemoreceptor glutamine deamidase CheD
766	 55.93	0	889493..890302	-	269	66044038	-	Psyr_0783	-	protein-glutamate O-methyltransferase
767	 62.96	0	890312..890851	-	179	66044039	-	Psyr_0784	-	CheW-like protein
768	 60.33	0	890888..892543	-	551	66044040	-	Psyr_0785	-	histidine kinase, HAMP region: chemotaxis sensory transducer
769	 62.56	0	892574..894691	-	705	66044041	-	Psyr_0786	-	CheW-like protein:ATP-binding region, ATPase-like:Signal transducing histidine kinase, homodimeric:Hpt
770	 62.20	0	894738..895028	-	96	66044042	-	Psyr_0787	-	Sulfate transporter/antisigma-factor antagonist STAS
771	 56.64	0	895052..895420	-	122	66044043	-	Psyr_0788	-	response regulator receiver
772	 61.99	0	895430..896647	-	405	66044044	-	Psyr_0789	-	chemotaxis sensory transducer
773	 61.66	0	897200..898498	-	432	66044045	-	Psyr_0790	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
774	 63.48	0	898715..899248	-	177	66044046	-	Psyr_0791	-	MOSC
775	 59.84	0	899245..899874	-	209	66044047	-	Psyr_0792	-	hypothetical protein
776	 57.43	0	899965..900462	+	165	66044048	-	Psyr_0793	-	hypothetical protein
777	 59.52	0	900589..900798	-	69	66044049	-	Psyr_0794	-	zinc-binding protein
778	 60.42	0	900795..901418	-	207	66044050	coaE	Psyr_0795	-	dephospho-CoA kinase
779	 59.68	0	901415..902287	-	290	66044051	-	Psyr_0796	-	prepilin peptidase
780	 49.10	-2	902289..903506	-	405	66044052	-	Psyr_0797	-	type II secretion system protein
781	 53.45	-1	903509..905203	-	564	66044053	-	Psyr_0798	-	type II secretion system protein E
782	 49.52	-2	905429..905848	+	139	66044054	-	Psyr_0799	-	fimbrial protein pilin
783	 55.86	0	906023..906568	-	181	66044055	-	Psyr_0800	-	hypothetical protein
784	 60.56	0	906688..907686	+	332	66044056	-	Psyr_0801	-	hypothetical protein
785	 61.49	0	907741..908880	+	379	66044057	-	Psyr_0802	-	peptidase S1, chymotrypsin
786	 62.52	0	908947..910080	+	377	66044058	-	Psyr_0803	-	hypothetical protein
787	 60.74	0	910073..910831	+	252	66044059	-	Psyr_0804	-	hypothetical protein
788	 62.47	0	910824..911918	+	364	66044060	-	Psyr_0805	-	hypothetical protein
789	 59.10	0	911918..912868	+	316	66044061	-	Psyr_0806	-	hypothetical protein
790	 58.77	0	912869..913615	+	248	66044062	-	Psyr_0807	-	HAD family hydrolase
791	 56.06	0	913662..914255	+	197	66044063	-	Psyr_0808	-	stress protein
792	 59.32	0	914252..915421	+	389	66044064	-	Psyr_0809	-	stress protein
793	 53.33	-1	915473..915922	+	149	66044065	-	Psyr_0810	-	tellurite resistance TerB
794	 56.71	0	915949..916983	+	344	66044066	-	Psyr_0811	-	integral membrane protein TerC
795	 54.69	-1	917011..917586	+	191	66044067	-	Psyr_0812	-	stress protein
796	 56.30	0	917624..918202	+	192	66044068	-	Psyr_0813	-	stress protein
797	 63.47	0	918412..919287	-	291	66044069	-	Psyr_0814	-	hypothetical protein
798	 61.84	0	919536..920384	-	282	66044070	-	Psyr_0815	-	nicotinate-nucleotide pyrophosphorylase
799	 60.02	0	920739..922994	+	751	66044071	-	Psyr_0816	-	hypothetical protein
800	 59.02	0	923198..923746	+	182	66044072	-	Psyr_0817	-	N-acetyl-anhydromuranmyl-L-alanine amidase
801	 62.72	0	923762..924598	+	278	66044073	-	Psyr_0818	-	ampE protein
802	 64.40	+1	924634..925428	-	264	66044074	-	Psyr_0819	-	TatD-related deoxyribonuclease
803	 59.34	0	925431..926426	-	331	66044075	-	Psyr_0820	-	DNA-binding transcriptional regulator FruR
804	 65.20	+1	926782..929652	+	956	66044076	-	Psyr_0821	-	phosphoenolpyruvate-protein phosphotransferase
805	 62.95	0	929652..930593	+	313	66044077	-	Psyr_0822	-	1-phosphofructokinase
806	 63.28	0	930606..932348	+	580	66044078	-	Psyr_0823	-	phosphotransferase system PTS, fructose-specific IIB subunit:PTS fructose IIC component
807	 64.55	+1	932388..933566	-	392	66044079	-	Psyr_0824	-	acetyl-CoA acetyltransferase
808	 64.71	+1	933674..934540	-	288	66044080	-	Psyr_0825	-	hypothetical protein
809	 61.02	0	934924..936588	-	554	66044081	pgi	Psyr_0826	-	glucose-6-phosphate isomerase
810	 61.97	0	936842..937693	-	283	66044082	panC	Psyr_0827	-	pantoate--beta-alanine ligase
811	 63.42	0	937690..938490	-	266	66044083	panB	Psyr_0828	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
812	 62.52	0	938719..939225	-	168	66044084	-	Psyr_0829	-	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
813	 60.77	0	939218..940693	-	491	66044085	-	Psyr_0830	-	Poly(A) polymerase
814	 60.74	0	941320..942804	-	494	66044086	-	Psyr_0831	-	response regulator receiver:sigma-54 factor, interaction region
815	 61.90	0	942776..945730	-	984	66044087	-	Psyr_0832	-	PAS
816	 51.98	-1	945714..945890	-	58	66044088	-	Psyr_0833	-	hypothetical protein
817	 62.84	0	945989..946876	-	295	66044089	-	Psyr_0834	-	glutamyl-Q tRNA(Asp) synthetase
818	 55.56	0	947408..947848	-	146	66044090	-	Psyr_0835	-	hypothetical protein
819	 61.55	0	948197..949369	+	390	66044091	-	Psyr_0836	-	hypothetical protein
820	 60.22	0	949369..950082	+	237	66044092	-	Psyr_0837	-	sugar fermentation stimulation protein A
821	 58.40	0	950113..950511	-	132	66044093	-	Psyr_0838	-	Rieske [2Fe-2S] region
822	 61.83	0	950669..951454	+	261	66044094	-	Psyr_0839	-	deoxyribose-phosphate aldolase
823	 58.26	0	951821..952165	-	114	66044095	-	Psyr_0840	-	pentapeptide repeat-containing protein
824	 59.90	0	952266..953936	-	556	66044096	-	Psyr_0841	-	hypothetical protein
825	 60.59	0	953935..956256	+	773	66044097	-	Psyr_0842	-	peptidoglycan glycosyltransferase
826	 65.05	+1	956274..957017	+	247	66044098	-	Psyr_0843	-	TPR repeat-containing protein
827	 62.42	0	957017..957346	+	109	66044099	-	Psyr_0844	-	hypothetical protein
828	 60.67	0	957358..957774	-	138	66044100	-	Psyr_0845	-	hypothetical protein
829	 59.13	0	958172..959896	+	574	66044101	-	Psyr_0846	-	acetolactate synthase 3 catalytic subunit
830	 58.54	0	959899..960390	+	163	66044102	ilvH	Psyr_0847	-	acetolactate synthase 3 regulatory subunit
831	 57.62	0	960438..961454	+	338	66044103	-	Psyr_0848	-	ketol-acid reductoisomerase
832	 59.57	0	961625..962470	+	281	66044104	-	Psyr_0849	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
833	 57.10	0	962540..963553	+	337	66044105	-	Psyr_0850	-	putative sulfite oxidase subunit YedY
834	 56.40	0	963553..964185	+	210	66044106	-	Psyr_0851	-	putative sulfite oxidase subunit YedZ
835	 56.81	0	970064..971311	-	415	66044107	-	Psyr_0852	-	pectate lyase
836	 58.76	0	971484..974303	-	939	66044108	-	Psyr_0853	-	hypothetical protein
59.35	MEAN

4.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.