version 1.0
Pseudomonas syringae pv. syringae B728a, complete genome - 1..6093698 5089 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1 58.14 0 1..1536 + 511 66043272 dnaA Psyr_0001 - chromosomal replication initiation protein 2 57.70 0 1575..2678 + 367 66043273 - Psyr_0002 - DNA polymerase III subunit beta 3 57.07 0 2701..3804 + 367 66043274 recF Psyr_0003 - recombination protein F 4 56.53 0 3809..6226 + 805 66043275 gyrB Psyr_0004 - DNA gyrase subunit B 5 54.28 -1 6282..7169 - 295 66043276 - Psyr_0005 - hypothetical protein 6 59.61 0 7197..8231 - 344 66043277 - Psyr_0006 - putative phenylacetaldoxime dehydratase. 7 58.75 0 8233..9243 - 336 66043278 - Psyr_0007 - aliphatic nitrilase 8 56.00 0 9410..10384 + 324 66043279 - Psyr_0008 - helix-turn-helix, AraC type 9 57.98 0 10525..11295 - 256 66043280 - Psyr_0009 - phospholipid/glycerol acyltransferase 10 60.41 0 11361..11903 - 180 66043281 - Psyr_0010 - D,D-heptose 1,7-bisphosphate phosphatase 11 62.38 0 11916..13970 - 684 66043282 glyS Psyr_0011 - glycyl-tRNA synthetase subunit beta 12 61.11 0 13967..14974 - 335 66043283 glyQ Psyr_0012 - glycyl-tRNA synthetase subunit alpha 13 60.14 0 14995..15546 + 183 66043284 - Psyr_0013 - DNA-3-methyladenine glycosylase I 14 61.26 0 15585..16472 + 295 66043285 - Psyr_0014 - lipid A biosynthesis lauroyl acyltransferase 15 61.55 0 16812..19175 - 787 66043286 - Psyr_0015 - oxidoreductase alpha (molybdopterin) subunit 16 62.01 0 19329..20702 - 457 66043287 trkA Psyr_0016 - potassium transporter peripheral membrane component 17 65.33 +1 20699..22045 - 448 66043288 - Psyr_0017 - Fmu, rRNA SAM-dependent methyltransferase 18 65.82 +1 22042..22986 - 314 66043289 fmt Psyr_0018 - methionyl-tRNA formyltransferase 19 55.62 0 23040..23546 - 168 66043290 def Psyr_0019 - peptide deformylase 20 61.31 0 23672..24697 + 341 66043291 - Psyr_0020 - peptidoglycan-binding LysM 21 64.16 +1 24821..25939 + 372 66043292 - Psyr_0021 - SMF protein 22 63.98 +1 25978..26535 + 185 66043293 - Psyr_0022 - SUA5/yciO/yrdC, N-terminal 23 63.91 +1 26572..27549 - 325 66043294 - Psyr_0023 - zinc-containing alcohol dehydrogenase superfamily protein 24 61.31 0 27721..28635 + 304 66043295 - Psyr_0024 - coproporphyrinogen III oxidase 25 64.73 +1 28635..29459 + 274 66043296 aroE Psyr_0025 - shikimate 5-dehydrogenase 26 62.40 0 29644..31212 - 522 66043297 - Psyr_0026 - Sulfate transporter/antisigma-factor antagonist STAS:sulphate transporter 27 52.83 -1 31284..31601 - 105 66043298 - Psyr_0027 - hypothetical protein 28 57.71 0 31768..32694 - 308 66043299 - Psyr_0028 - substrate-binding region of ABC-type glycine betaine transport system 29 60.03 0 32731..34236 - 501 66043300 - Psyr_0029 - sulfatase 30 62.99 0 34350..35300 + 316 66043301 - Psyr_0030 - regulatory protein, LysR:LysR, substrate-binding 31 58.79 0 35445..36269 + 274 66043302 - Psyr_0031 - Alpha/beta hydrolase fold 32 62.52 0 36536..37066 - 176 66043303 - Psyr_0032 - hypothetical protein 33 64.57 +1 37192..38001 - 269 66043304 trpA Psyr_0033 - tryptophan synthase subunit alpha 34 61.95 0 37998..39227 - 409 66043305 - Psyr_0034 - tryptophan synthase subunit beta 35 61.34 0 39307..40263 + 318 66043306 - Psyr_0035 - regulatory protein, LysR:LysR, substrate-binding 36 57.80 0 40264..40590 - 108 66043307 - Psyr_0036 - hypothetical protein 37 52.78 -1 40756..40971 + 71 66043308 - Psyr_0037 - hypothetical protein 38 56.89 0 41122..41346 + 74 66043309 - Psyr_0038 - hypothetical protein 39 62.97 0 41484..42485 - 333 66043310 - Psyr_0039 - luciferase 40 55.32 0 42698..43129 + 143 66043311 - Psyr_0040 - OsmC-like protein 41 53.42 -1 43248..43481 + 77 66043312 - Psyr_0041 - hypothetical protein 42 59.92 0 43482..43970 - 162 66043313 - Psyr_0042 - putative lipoprotein 43 60.89 0 44004..45059 + 351 66043314 - Psyr_0043 - hypothetical protein 44 62.27 0 45231..45776 - 181 66043315 - Psyr_0044 - hexapaptide repeat-containing transferase 45 61.79 0 45889..47940 + 683 66043316 - Psyr_0045 - oligopeptidase A 46 56.36 0 47937..48227 + 96 66043317 - Psyr_0046 - hypothetical protein 47 45.21 -2 48272..48574 - 100 66043318 - Psyr_0047 - hypothetical protein 48 50.22 -2 48668..48898 - 76 66043319 - Psyr_0048 - hypothetical protein 49 65.40 +1 49110..51008 - 632 66043320 - Psyr_0049 - cytochrome c, class I:Iron permease FTR1 50 61.61 0 51165..51797 - 210 66043321 - Psyr_0050 - lysine exporter protein LysE/YggA 51 62.96 0 51865..52458 - 197 66043322 - Psyr_0051 - hypothetical protein 52 63.32 0 52475..54385 - 636 66043323 - Psyr_0052 - ABC transporter 53 61.22 0 54432..54908 + 158 66043324 - Psyr_0053 - hypothetical protein 54 62.83 0 54905..55921 - 338 66043325 - Psyr_0054 - alginate regulatory protein AlgR3 55 63.42 0 56138..56815 + 225 66043326 - Psyr_0055 - FKBP-type peptidyl-prolyl isomerase, N-terminal:peptidylprolyl isomerase, FKBP-type 56 57.17 0 56893..57366 - 157 161486741 - Psyr_0056 - anti-RNA polymerase sigma 70 factor 57 56.21 0 57384..57536 - 50 66043328 - Psyr_0057 - hypothetical protein 58 60.42 0 57541..58068 - 175 66043329 - Psyr_0058 - disulfide bond formation protein DsbB 59 63.05 0 58285..59529 - 414 66043330 - Psyr_0059 - HemY, N-terminal:HemY, N-terminal:HemY, N-terminal 60 63.18 0 59526..60701 - 391 66043331 - Psyr_0060 - hypothetical protein 61 63.82 +1 60701..61474 - 257 66043332 - Psyr_0061 - uroporphyrinogen-III synthase 62 63.80 +1 61471..62412 - 313 66043333 hemC Psyr_0062 - porphobilinogen deaminase 63 61.85 0 62645..63391 - 248 66043334 - Psyr_0063 - response regulator receiver:LytTr DNA-binding region 64 58.54 0 63388..64470 - 360 66043335 - Psyr_0064 - histidine kinase internal region 65 62.87 0 64605..65999 + 464 66043336 - Psyr_0065 - argininosuccinate lyase 66 63.53 0 66405..67646 + 413 66043337 - Psyr_0066 - bifunctional spore maturation protein, fused SpmA/SpmB 67 61.56 0 67651..68844 - 397 66043338 - Psyr_0067 - hypothetical protein 68 61.37 0 68941..70317 - 458 66043339 - Psyr_0068 - insulinase-like:peptidase M16, C-terminal 69 62.37 0 70375..72027 - 550 66043340 - Psyr_0069 - Na+/Pi-cotransporter:Na/Pi cotransporter II-related 70 60.67 0 72227..73060 + 277 66043341 - Psyr_0070 - hypothetical protein 71 62.27 0 72996..74972 - 658 66043342 - Psyr_0071 - histidine kinase, HAMP region: chemotaxis sensory transducer 72 61.13 0 75159..76079 - 306 66043343 - Psyr_0072 - regulatory protein, LysR:LysR, substrate-binding 73 64.06 +1 76238..77620 + 460 66043344 - Psyr_0073 - multidrug efflux protein NorA 74 63.66 +1 77633..79297 - 554 66043345 - Psyr_0074 - GGDEF 75 60.55 0 79502..81511 + 669 66043346 - Psyr_0075 - ATP-dependent DNA helicase RepA 76 59.82 0 81563..82132 + 189 66043347 - Psyr_0076 - xanthine phosphoribosyltransferase 77 64.09 +1 82724..84043 - 439 66043348 - Psyr_0077 - helix-turn-helix, Fis-type 78 61.36 0 84310..85194 + 294 66043349 - Psyr_0078 - Beta-lactamase-like 79 64.83 +1 85222..86475 + 417 66043350 - Psyr_0079 - hypothetical protein 80 65.68 +1 86468..87280 + 270 66043351 - Psyr_0080 - hypothetical protein 81 62.69 0 87481..88461 - 326 66043352 - Psyr_0081 - ABC transporter 82 61.86 0 88464..89336 - 290 66043353 - Psyr_0082 - binding-protein dependent transport system inner membrane protein 83 63.50 0 89350..90171 - 273 66043354 - Psyr_0083 - binding-protein dependent transport system inner membrane protein 84 59.05 0 90266..91276 - 336 66043355 - Psyr_0084 - extracellular solute-binding protein 85 52.22 -1 91428..91607 - 59 66043356 - Psyr_0085 - hypothetical protein 86 60.68 0 91808..93727 - 639 66043357 - Psyr_0086 - PAS:GGDEF 87 59.75 0 93880..95064 + 394 66043358 - Psyr_0087 - Fatty acid desaturase 88 61.01 0 95185..96192 + 335 66043359 - Psyr_0088 - PAS:GGDEF 89 64.22 +1 96943..98331 - 462 66043360 - Psyr_0089 - response regulator receiver 90 60.89 0 98488..99768 - 426 66043361 - Psyr_0090 - 4-aminobutyrate aminotransferase 91 62.37 0 99948..101390 - 480 66043362 gabD Psyr_0091 - succinate-semialdehyde dehydrogenase I 92 60.53 0 101677..102312 - 211 66043363 - Psyr_0092 - lysine exporter protein LysE/YggA 93 63.32 0 102358..103761 - 467 66043364 - Psyr_0093 - flavoprotein monooxygenase 94 55.46 0 103896..104600 + 234 66043365 - Psyr_0094 - hypothetical protein 95 56.59 0 104951..106369 - 472 66043366 - Psyr_0095 - transposase IS4 96 55.79 0 106580..107563 - 327 66043367 - Psyr_0096 - transposase IS4 97 39.53 -2 108211..109452 + 413 66043368 - Psyr_0097 - hypothetical protein 98 43.22 -2 109452..111323 + 623 66043369 - Psyr_0098 - hypothetical protein 99 43.81 -2 111332..111541 + 69 66043370 - Psyr_0099 - hypothetical protein 100 49.06 -2 112435..112968 - 177 66043371 - Psyr_0100 - hypothetical protein 59.35 MEAN 4.19 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.