IslandPath Analysis: Pseudomonas syringae pv. syringae B728a



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.35   STD DEV: 4.19
Pseudomonas syringae pv. syringae B728a, complete genome - 1..6093698
5089 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
77	 64.09	+1	82724..84043	-	439	66043348	-	Psyr_0077	-	helix-turn-helix, Fis-type
78	 61.36	0	84310..85194	+	294	66043349	-	Psyr_0078	-	Beta-lactamase-like
79	 64.83	+1	85222..86475	+	417	66043350	-	Psyr_0079	-	hypothetical protein
80	 65.68	+1	86468..87280	+	270	66043351	-	Psyr_0080	-	hypothetical protein
81	 62.69	0	87481..88461	-	326	66043352	-	Psyr_0081	-	ABC transporter
82	 61.86	0	88464..89336	-	290	66043353	-	Psyr_0082	-	binding-protein dependent transport system inner membrane protein
83	 63.50	0	89350..90171	-	273	66043354	-	Psyr_0083	-	binding-protein dependent transport system inner membrane protein
84	 59.05	0	90266..91276	-	336	66043355	-	Psyr_0084	-	extracellular solute-binding protein
85	 52.22	-1	91428..91607	-	59	66043356	-	Psyr_0085	-	hypothetical protein
86	 60.68	0	91808..93727	-	639	66043357	-	Psyr_0086	-	PAS:GGDEF
87	 59.75	0	93880..95064	+	394	66043358	-	Psyr_0087	-	Fatty acid desaturase
88	 61.01	0	95185..96192	+	335	66043359	-	Psyr_0088	-	PAS:GGDEF
89	 64.22	+1	96943..98331	-	462	66043360	-	Psyr_0089	-	response regulator receiver
90	 60.89	0	98488..99768	-	426	66043361	-	Psyr_0090	-	4-aminobutyrate aminotransferase
91	 62.37	0	99948..101390	-	480	66043362	gabD	Psyr_0091	-	succinate-semialdehyde dehydrogenase I
92	 60.53	0	101677..102312	-	211	66043363	-	Psyr_0092	-	lysine exporter protein LysE/YggA
93	 63.32	0	102358..103761	-	467	66043364	-	Psyr_0093	-	flavoprotein monooxygenase
94	 55.46	0	103896..104600	+	234	66043365	-	Psyr_0094	-	hypothetical protein
95	 56.59	0	104951..106369	-	472	66043366	-	Psyr_0095	-	transposase IS4
96	 55.79	0	106580..107563	-	327	66043367	-	Psyr_0096	-	transposase IS4
97	 39.53	-2	108211..109452	+	413	66043368	-	Psyr_0097	-	hypothetical protein
98	 43.22	-2	109452..111323	+	623	66043369	-	Psyr_0098	-	hypothetical protein
99	 43.81	-2	111332..111541	+	69	66043370	-	Psyr_0099	-	hypothetical protein
100	 49.06	-2	112435..112968	-	177	66043371	-	Psyr_0100	-	hypothetical protein
101	 50.30	-2	112987..113487	-	166	66043372	-	Psyr_0101	-	hypothetical protein
102	 42.71	-2	113906..114502	-	198	66043373	-	Psyr_0102	-	hypothetical protein
103	 50.26	-2	114514..114891	-	125	66043374	-	Psyr_0103	-	hypothetical protein
104	 46.68	-2	115713..116873	+	386	66043375	-	Psyr_0104	-	hypothetical protein
105	 56.69	0	116991..117812	-	273	66043376	-	Psyr_0105	-	integrase catalytic subunit
106	 57.00	0	117869..118168	-	99	66043377	-	Psyr_0106	-	transposase IS3/IS911
107	 52.46	-1	118370..118735	+	121	66043378	-	Psyr_0107	-	hypothetical protein
108	 58.06	0	118946..120304	+	452	66043379	-	Psyr_0108	-	major facilitator transporter
109	 42.02	-2	120719..121144	+	141	66043380	-	Psyr_0109	-	hypothetical protein
110	 51.81	-1	121508..122362	+	284	66043381	-	Psyr_0110	-	hypothetical protein
111	 47.92	-2	122362..122793	+	143	66043382	-	Psyr_0111	-	hypothetical protein
112	 50.52	-2	122810..123193	-	127	66043383	-	Psyr_0112	-	hypothetical protein
113	 47.76	-2	123930..124664	-	244	66043384	-	Psyr_0113	-	hypothetical protein
114	 54.75	-1	125003..125455	+	150	66043385	-	Psyr_0114	-	hypothetical protein
115	 61.57	0	125598..126362	+	254	66043386	-	Psyr_0115	-	hypothetical protein
116	 53.40	-1	126577..127209	-	210	66043387	-	Psyr_0116	-	lysine exporter protein LysE/YggA
117	 58.76	0	127274..128437	-	387	66043388	-	Psyr_0117	-	aminotransferase, class I and II
118	 53.09	-1	128434..129486	-	350	66043389	-	Psyr_0118	-	hypothetical protein
119	 58.50	0	130166..130936	+	256	66043390	-	Psyr_0120	-	Short-chain dehydrogenase/reductase SDR
120	 53.65	-1	131018..131647	-	209	66043391	-	Psyr_0121	-	regulatory protein, TetR
121	 51.90	-1	131737..132393	+	218	66043392	-	Psyr_0122	-	NAD(P)H dehydrogenase (quinone)
122	 55.84	0	132718..133539	+	273	66043393	-	Psyr_0123	-	Short-chain dehydrogenase/reductase SDR
123	 61.43	0	133779..135326	+	515	66043394	-	Psyr_0124	-	hemolysin-type calcium-binding region
124	 53.50	-1	135597..135953	+	118	66043395	-	Psyr_0125	-	hypothetical protein
125	 53.97	-1	135970..136410	+	146	66043396	-	Psyr_0126	-	hypothetical protein
126	 52.97	-1	136494..136931	+	145	66043397	-	Psyr_0127	-	glutathione-dependent formaldehyde-activating, GFA
127	 53.01	-1	137161..137526	+	121	66043398	-	Psyr_0128	-	hypothetical protein
128	 57.33	0	137656..137955	+	99	66043399	-	Psyr_0129	-	hypothetical protein
129	 53.69	-1	138083..138991	-	302	66043400	-	Psyr_0130	-	hypothetical protein
130	 58.37	0	139587..140261	+	224	66043401	-	Psyr_0131	-	HAD family hydrolase
131	 62.25	0	140362..140610	-	82	66043402	-	Psyr_0132	-	hypothetical protein
132	 60.72	0	140694..141164	-	156	66043403	-	Psyr_0133	-	helix-turn-helix, Fis-type
133	 62.54	0	142016..143203	+	395	66043404	-	Psyr_0134	-	aminotransferase, class V
134	 64.48	+1	144401..145225	+	274	66043405	-	Psyr_0135	-	TonB, C-terminal
135	 63.56	+1	145279..145986	+	235	66043406	-	Psyr_0136	-	MotA/TolQ/ExbB proton channel
136	 58.46	0	145986..146387	+	133	66043407	-	Psyr_0137	-	biopolymer transport protein ExbD/TolR
137	 60.92	0	146598..149312	+	904	66043408	-	Psyr_0138	-	TonB-dependent receptor:TonB-dependent receptor
138	 62.26	0	149457..151340	+	627	66043409	-	Psyr_0139	-	extracellular solute-binding protein
139	 61.70	0	151342..152409	+	355	66043410	-	Psyr_0140	-	binding-protein dependent transport system inner membrane protein
140	 63.83	+1	152409..153431	+	340	66043411	-	Psyr_0141	-	binding-protein dependent transport system inner membrane protein
141	 63.13	0	153433..155016	+	527	66043412	-	Psyr_0142	-	ABC transporter
142	 62.66	0	155026..156546	-	506	66043413	-	Psyr_0143	-	chemotaxis sensory transducer
143	 53.99	-1	157030..157518	-	162	66043414	-	Psyr_0144	-	regulatory proteins, AsnC/Lrp
144	 62.52	0	157566..158240	-	224	66043415	-	Psyr_0145	-	hypothetical protein
145	 62.38	0	158304..159608	-	434	66043416	-	Psyr_0146	-	4-aminobutyrate aminotransferase
146	 62.26	0	159893..160822	+	309	66043417	-	Psyr_0147	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
147	 58.75	0	160872..161111	+	79	66043418	-	Psyr_0148	-	hypothetical protein
148	 64.06	+1	161189..162646	-	485	66043419	-	Psyr_0149	-	succinic semialdehyde dehydrogenase
149	 63.99	+1	162761..163918	-	385	66043420	-	Psyr_0150	-	acetylornithine deacetylase
150	 62.74	0	163915..165084	-	389	66043421	-	Psyr_0151	-	FAD dependent oxidoreductase
151	 64.96	+1	165081..166490	-	469	66043422	-	Psyr_0152	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase:BFD-like [2Fe-2S]-binding region
152	 64.42	+1	166469..166780	-	103	66043423	-	Psyr_0153	-	hypothetical protein
153	 64.98	+1	166777..168618	-	613	66043424	-	Psyr_0154	-	oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal
154	 64.51	+1	168620..169498	-	292	66043425	-	Psyr_0155	-	binding-protein dependent transport system inner membrane protein
155	 61.65	0	169495..170451	-	318	66043426	-	Psyr_0156	-	binding-protein dependent transport system inner membrane protein
156	 61.54	0	170483..172120	-	545	66043427	-	Psyr_0157	-	twin-arginine translocation pathway signal
157	 62.58	0	172214..173509	-	431	66043428	-	Psyr_0158	-	FAD dependent oxidoreductase
158	 56.50	0	173555..174223	-	222	66043429	-	Psyr_0159	-	HAD family hydrolase
159	 64.22	+1	174758..175615	+	285	66043430	-	Psyr_0160	-	GCN5-related N-acetyltransferase
160	 62.61	0	175914..176627	+	237	66043431	-	Psyr_0161	-	hypothetical protein
161	 52.67	-1	177069..177518	+	149	66043432	-	Psyr_0162	-	hypothetical protein
162	 53.25	-1	177649..178356	+	235	66043433	-	Psyr_0163	-	hypothetical protein
163	 58.30	0	178366..179082	+	238	66043434	-	Psyr_0164	-	hypothetical protein
164	 58.33	0	179100..179543	-	147	66043435	-	Psyr_0165	-	GCN5-related N-acetyltransferase
165	 42.03	-2	180107..181417	+	436	66043436	-	Psyr_0166	-	hypothetical protein
166	 42.79	-2	181423..181845	+	140	66043437	-	Psyr_0167	-	hypothetical protein
167	 60.84	0	182216..183760	-	514	66043438	-	Psyr_0168	-	phosphoenolpyruvate carboxykinase
168	 62.13	0	183940..184842	-	300	66043439	hslO	Psyr_0169	-	Hsp33-like chaperonin
169	 62.01	0	185020..185427	-	135	66043440	-	Psyr_0170	-	RNA-binding S4
170	 56.19	0	185595..186377	+	260	66043441	-	Psyr_0171	-	EAL
171	 58.28	0	186394..186870	+	158	66043442	-	Psyr_0172	-	hypothetical protein
172	 59.27	0	186867..187772	+	301	66043443	-	Psyr_0173	-	S6 modification enzyme RimK
173	 58.03	0	188229..189560	+	443	66043444	gltP	Psyr_0174	-	glutamate/aspartate:proton symporter
174	 55.80	0	189651..189926	+	91	66043445	-	Psyr_0175	-	hypothetical protein
175	 58.63	0	190143..190391	+	82	66043446	-	Psyr_0176	-	hypothetical protein
176	 60.98	0	190574..193420	+	948	66043447	cyaA	Psyr_0177	-	adenylate cyclase
59.35	MEAN

4.19	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.