version 1.0
Pseudomonas syringae pv. tomato str. DC3000, complete genome - 1..6397126 5475 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 877 48.81 -2 981249..981500 + 83 90818606 - PSPTO_5619 - PSPTO5619 878 52.94 -1 981500..981958 + 152 28868121 hopAG1 PSPTO_0901 - type III effector HopAG1 879 54.19 -1 982088..983065 - 325 28868122 - PSPTO_0902 - ISPssy, transposase 880 54.19 -1 983280..984257 - 325 28868123 - PSPTO_0903 - ISPssy, transposase 881 58.47 0 986113..987381 + 422 28868125 hopAH1 PSPTO_0905 - type III effector HopAH1 882 53.94 -1 987569..988354 + 261 28868126 hopAI1 PSPTO_0906 - type III effector HopAI1 883 53.05 -1 988523..989734 + 403 28868127 - PSPTO_0907 - hypothetical protein 884 60.82 0 989768..990844 - 358 28868128 cheB-1 PSPTO_0908 - chemotaxis-specific methylesterase 885 57.59 0 990834..991340 - 168 28868129 - PSPTO_0909 - chemoreceptor glutamine deamidase CheD 886 57.04 0 991337..992146 - 269 28868130 cheR-1 PSPTO_0910 - chemotaxis protein methyltransferase CheR 887 62.04 0 992156..992695 - 179 28868131 cheW-1 PSPTO_0911 - chemotaxis protein CheW 888 58.94 0 992732..994387 - 551 28868132 - PSPTO_0912 - methyl-accepting chemotaxis protein 889 62.39 0 994416..996518 - 700 28868133 cheA-1 PSPTO_0913 - chemotaxis sensor histidine kinase CheA 890 63.23 +1 996565..996855 - 96 28868134 - PSPTO_0914 - STAS domain-containing protein 891 56.91 0 996882..997250 - 122 28868135 cheY-1 PSPTO_0915 - chemotaxis protein CheY 892 61.56 0 997260..998474 - 404 28868136 - PSPTO_0916 - methyl-accepting chemotaxis protein, putative 893 61.12 0 998903..1000201 - 432 28868137 ndH PSPTO_0917 - NADH dehydrogenase 894 59.26 0 1000297..1000404 - 35 28868138 - PSPTO_0918 - hypothetical protein 895 64.19 +1 1000418..1000942 - 174 28868139 - PSPTO_0919 - MOSC domain-containing protein 896 58.73 0 1000948..1001577 - 209 28868140 - PSPTO_0920 - hypothetical protein 897 43.18 -2 1001589..1001720 - 43 28868141 - PSPTO_0921 - hypothetical protein 898 59.52 0 1002367..1002576 - 69 28868142 - PSPTO_0922 - zinc-binding protein 899 60.26 0 1002573..1003196 - 207 28868143 coaE PSPTO_0923 - dephospho-CoA kinase 900 59.22 0 1003193..1004065 - 290 28868144 pilD PSPTO_0924 - type IV pilus prepilin peptidase PilD 901 47.87 -2 1004067..1005284 - 405 28868145 pilC PSPTO_0925 - type IV pilus biogenesis protein PilC 902 54.34 -1 1005287..1006981 - 564 28868146 pilB PSPTO_0926 - type IV pilus biogenesis protein PilB 903 47.09 -2 1007206..1007634 + 142 28868147 - PSPTO_0927 - type IV pilus biogenesis protein 904 57.99 0 1007830..1008198 - 122 28868148 - PSPTO_0928 - hypothetical protein 905 56.68 0 1008356..1008976 + 206 28868149 gsT PSPTO_0929 - glutathione S-transferase 906 55.70 0 1009217..1009909 + 230 28868150 - PSPTO_0930 - hypothetical protein 907 51.72 -1 1009906..1010313 + 135 28868151 - PSPTO_0931 - hypothetical protein 908 55.86 0 1010358..1010903 - 181 28868152 - PSPTO_0932 - hypothetical protein 909 60.06 0 1011024..1012022 + 332 28868153 - PSPTO_0933 - hypothetical protein 910 62.05 0 1012077..1013225 + 382 28868154 - PSPTO_0934 - trypsin domain-containing protein 911 62.52 0 1013292..1014425 + 377 28868155 - PSPTO_0935 - hypothetical protein 912 59.42 0 1014418..1015176 + 252 28868156 - PSPTO_0936 - hypothetical protein 913 62.37 0 1015169..1016263 + 364 28868157 - PSPTO_0937 - hypothetical protein 914 60.04 0 1016263..1017213 + 316 28868158 - PSPTO_0938 - hypothetical protein 915 58.11 0 1017283..1017960 + 225 28868159 - PSPTO_0939 - HAD-superfamily hydrolase 916 57.58 0 1018008..1018601 + 197 28868160 terZ PSPTO_0940 - tellurium resistance protein TerZ 917 58.37 0 1018598..1019803 + 401 28868161 terA PSPTO_0941 - tellurium resistance protein TerA 918 51.56 -1 1019855..1020304 + 149 28868162 terB PSPTO_0942 - tellurium resistance protein TerB 919 56.04 0 1020331..1021365 + 344 28868163 terC PSPTO_0943 - tellurium resistance protein TerC 920 55.73 0 1021393..1021968 + 191 28868164 terD PSPTO_0944 - tellurium resistance protein TerD 921 56.82 0 1022006..1022584 + 192 28868165 terE PSPTO_0945 - tellurium resistance protein TerE 922 57.71 0 1022855..1024093 - 412 28868166 - PSPTO_0946 - tellurium resistance protein, putative 923 61.63 0 1024154..1024888 - 244 28868167 - PSPTO_0947 - hypothetical protein 924 61.60 0 1025270..1026118 - 282 28868168 nadC PSPTO_0948 - nicotinate-nucleotide pyrophosphorylase 925 59.13 0 1026472..1028727 + 751 28868169 - PSPTO_0949 - hypothetical protein 926 57.92 0 1029038..1029586 + 182 28868170 ampD PSPTO_0950 - N-acetyl-anhydromuranmyl-L-alanine amidase 927 62.49 0 1029602..1030438 + 278 28868171 - PSPTO_0951 - ampE protein 928 59.66 0 1030586..1031284 - 232 28868172 - PSPTO_0952 - TatD family hydrolase 929 60.04 0 1031386..1032381 - 331 28868173 - PSPTO_0953 - DNA-binding transcriptional regulator FruR 930 64.23 +1 1032736..1035603 + 955 28868174 - PSPTO_0954 - phosphoenolpyruvate-protein phosphotransferase,EI/HPr/EIIA components 931 63.91 +1 1035603..1036544 + 313 28868175 fruK PSPTO_0955 - 1-phosphofructokinase 932 61.99 0 1036557..1038311 + 584 28868176 - PSPTO_0956 - phosphotransferase system, fructose-specific IIBC component 933 63.61 +1 1038333..1039511 - 392 28868177 phbA-1 PSPTO_0957 - acetyl-CoA acetyltransferase 934 64.94 +1 1039650..1040516 - 288 28868178 - PSPTO_0958 - hypothetical protein 935 60.42 0 1040763..1042427 - 554 28868179 pgi PSPTO_0959 - glucose-6-phosphate isomerase 936 62.21 0 1042670..1043521 - 283 28868180 panC PSPTO_0960 - pantoate--beta-alanine ligase 937 62.05 0 1043518..1044318 - 266 28868181 panB PSPTO_0961 - 3-methyl-2-oxobutanoate hydroxymethyltransferase 938 62.72 0 1044547..1045053 - 168 28868182 folK-2 PSPTO_0962 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase 939 60.26 0 1045046..1046449 - 467 28868183 pcnB PSPTO_0963 - poly(A) polymerase 940 60.75 0 1047150..1048586 - 478 28868184 - PSPTO_0964 - sigma-54 dependent transcriptional regulator/response regulator 941 61.95 0 1048609..1051557 - 982 28868185 - PSPTO_0965 - sensor histidine kinase 942 53.11 -1 1051547..1051723 - 58 28868186 - PSPTO_0966 - hypothetical protein 943 61.71 0 1051822..1052709 - 295 28868187 - PSPTO_0967 - glutamyl-Q tRNA(Asp) synthetase 944 54.07 -1 1053296..1054756 - 486 28868188 - PSPTO_0968 - ISPsy6, transposase 945 55.33 0 1054836..1055276 - 146 28868189 dksA PSPTO_0969 - dnaK suppressor protein 946 61.13 0 1055626..1056798 + 390 28868190 - PSPTO_0970 - hypothetical protein 947 61.76 0 1056798..1057511 + 237 28868191 sfsA PSPTO_0971 - sugar fermentation stimulation protein A 948 58.86 0 1057534..1057866 - 110 28868192 - PSPTO_0972 - Rieske family iron-sulfur cluster-binding protein 949 62.44 0 1058084..1058863 + 259 28868193 deoC PSPTO_0973 - deoxyribose-phosphate aldolase 950 53.70 -1 1059152..1059259 + 35 28868194 - PSPTO_0974 - hypothetical protein 951 58.84 0 1059244..1059588 - 114 28868195 - PSPTO_0975 - pentapeptide repeat-containing protein 952 58.67 0 1059690..1061228 - 512 28868196 - PSPTO_0976 - hypothetical protein 953 59.39 0 1061359..1063680 + 773 28868197 - PSPTO_0977 - penicillin-binding protein 954 62.78 +1 1063668..1064438 + 256 28868198 - PSPTO_0978 - hypothetical protein 955 58.48 0 1064438..1064767 + 109 28868199 - PSPTO_0979 - hypothetical protein 956 61.94 0 1064777..1065220 - 147 28868200 - PSPTO_0980 - hypothetical protein 957 58.38 0 1065591..1067315 + 574 28868201 ilvB PSPTO_0981 - acetolactate synthase 3 catalytic subunit 958 58.74 0 1067318..1067809 + 163 28868202 ilvN PSPTO_0982 - acetolactate synthase 3 regulatory subunit 959 56.64 0 1067857..1068873 + 338 28868203 ilvC PSPTO_0983 - ketol-acid reductoisomerase 960 59.27 0 1069018..1069869 + 283 28868204 pssA-1 PSPTO_0984 - CDP-diacylglycerol--serine O-phosphatidyltransferase 961 58.38 0 1069934..1070947 + 337 28868205 - PSPTO_0985 - putative sulfite oxidase subunit YedY 962 56.24 0 1070947..1071579 + 210 28868206 - PSPTO_0986 - putative sulfite oxidase subunit YedZ 963 50.22 -2 1077352..1077582 + 76 28868207 - PSPTO_0987 - hypothetical protein 964 59.50 0 1077641..1080460 - 939 28868208 - PSPTO_0988 - hypothetical protein 965 61.02 0 1080457..1081164 - 235 28868209 - PSPTO_0989 - hypothetical protein 966 62.36 0 1081154..1082431 - 425 28868210 - PSPTO_0990 - hypothetical protein 967 65.30 +1 1082577..1083380 + 267 28868211 - PSPTO_0991 - hypothetical protein 968 56.14 0 1083373..1083828 + 151 28868212 rimI PSPTO_0992 - ribosomal-protein-alanine acetyltransferase 969 59.07 0 1083838..1084245 - 135 28868213 - PSPTO_0993 - hypothetical protein 970 59.31 0 1084494..1085132 + 212 28868214 - PSPTO_0994 - carbonic anhydrase 971 59.02 0 1085145..1086818 - 557 28868215 - PSPTO_0995 - methyl-accepting chemotaxis protein 972 60.61 0 1086926..1087585 - 219 28868216 - PSPTO_0996 - HD domain-containing protein 973 59.28 0 1087661..1089664 - 667 28868217 - PSPTO_0997 - acyltransferase family protein 974 54.93 0 1089883..1090257 + 124 28868218 - PSPTO_0998 - alkylphosphonate utilization operon protein PhnA, putative 975 61.36 0 1090603..1091826 + 407 28868219 - PSPTO_0999 - sugar efflux transporter 976 57.92 0 1091889..1092608 - 239 28868220 - PSPTO_1000 - CDP-alcohol phosphatidyltransferase family protein 58.61 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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