version 1.0
Pseudomonas syringae pv. tomato str. DC3000, complete genome - 1..6397126 5475 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 772 65.70 +1 856374..857201 - 275 28868017 - PSPTO_0789 - phosphonate ABC transporter, permease protein, putative 773 65.79 +1 857195..857992 - 265 28868018 - PSPTO_0790 - phosphonate ABC transporter, ATP-binding protein, putative 774 61.50 0 857989..858840 - 283 28868019 - PSPTO_0791 - phosphonate ABC transporter, periplasmic phosphonate-binding protein, putative 775 64.44 +1 858886..859020 + 44 28868020 - PSPTO_0792 - hypothetical protein 776 63.29 +1 859077..860111 + 344 28868021 selD PSPTO_0793 - selenophosphate synthetase 777 61.22 0 860111..861211 + 366 28868022 - PSPTO_0794 - tRNA 2-selenouridine synthase 778 63.92 +1 861246..862010 + 254 28868023 - PSPTO_0795 - hypothetical protein 779 61.92 0 862083..863051 - 322 28868024 ispB PSPTO_0796 - octylprenyl diphosphate synthase 780 51.28 -1 863291..863602 + 103 28868025 rplU PSPTO_0797 - 50S ribosomal protein L21 781 56.52 0 863635..863910 + 91 28868026 rpmA PSPTO_0798 - 50S ribosomal protein L27 782 59.15 0 864127..865350 + 407 28868027 - PSPTO_0799 - GTPase ObgE 783 63.99 +1 865441..866559 + 372 28868028 proB PSPTO_0800 - gamma-glutamyl kinase 784 60.08 0 866585..867055 + 156 28868029 creA PSPTO_0801 - creA protein 785 52.33 -1 867260..867538 - 92 28868030 rpsT PSPTO_0802 - 30S ribosomal protein S20 786 51.52 -1 867642..867740 + 32 28868031 - PSPTO_0803 - hypothetical protein 787 59.19 0 867789..869327 + 512 28868032 - PSPTO_0804 - MviN family membrane protein 788 62.03 0 869460..870386 + 308 28868033 ribF PSPTO_0805 - bifunctional riboflavin kinase/FMN adenylyltransferase 789 60.38 0 870407..873238 + 943 28868034 ileS PSPTO_0806 - isoleucyl-tRNA synthetase 790 58.43 0 873231..873752 + 173 28868035 lspA PSPTO_0807 - lipoprotein signal peptidase 791 56.18 0 873745..874221 + 158 28868036 - PSPTO_0808 - peptidyl-prolyl cis-trans isomerase, FKBP-type 792 61.92 0 874305..875252 + 315 28868037 ispH PSPTO_0809 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 793 57.29 0 875259..875759 - 166 28868038 - PSPTO_0810 - type IV pilus biogenesis protein 794 57.17 0 875891..876364 + 157 28868039 - PSPTO_0811 - pillin, putative 795 60.47 0 876364..876879 + 171 28868040 - PSPTO_0812 - hypothetical protein 796 53.81 -1 876876..877583 + 235 28868041 - PSPTO_0813 - hypothetical protein 797 54.04 -1 877595..878101 + 168 28868042 - PSPTO_0814 - hypothetical protein 798 55.15 0 878088..881291 + 1067 28868043 - PSPTO_0815 - type IV pilus-associated protein, putative 799 56.22 0 881303..881704 + 133 28868044 - PSPTO_0816 - type IV pilus biogenesis protein 800 62.59 0 881733..882836 + 367 28868045 - PSPTO_0817 - oxidoreductase, FAD-binding 801 59.01 0 882967..883410 + 147 28868046 - PSPTO_0818 - MarR family transcriptional regulator 802 58.23 0 883449..884195 + 248 28868047 - PSPTO_0819 - hypothetical protein 803 61.56 0 884192..887302 - 1036 28868048 - PSPTO_0820 - AcrB/AcrD/AcrF family protein 804 64.52 +1 887299..888414 - 371 28868049 - PSPTO_0821 - RND family efflux transporter MFP subunit 805 55.99 0 888496..889113 - 205 28868050 - PSPTO_0822 - TetR family transcriptional regulator 806 60.25 0 889587..890927 - 446 28868051 pilR PSPTO_0823 - type 4 fimbriae expression regulatory protein pilR 807 60.09 0 890930..892525 - 531 28868052 pilS PSPTO_0824 - sensor protein PilS 808 60.55 0 892515..892841 - 108 28868053 - PSPTO_0825 - hypothetical protein 809 59.88 0 892888..893904 - 338 28868054 - PSPTO_0826 - competence lipoprotein ComL, putative 810 62.20 0 894060..895022 + 320 162533081 rluD PSPTO_0827 - ribosomal large subunit pseudouridine synthase D 811 61.73 0 895019..895747 + 242 28868055 - PSPTO_0828 - hypothetical protein 812 59.92 0 895919..898483 + 854 28868056 clpB PSPTO_0829 - clpB protein 813 55.94 0 900988..902916 - 642 28868057 - PSPTO_0831 - hypothetical protein 814 57.78 0 903025..903834 - 269 28868058 - PSPTO_0832 - transposase/IS protein 815 59.24 0 903831..904853 - 340 28868059 - PSPTO_0833 - ISPsy4, transposase 816 48.02 -2 905575..906534 + 319 28868060 - PSPTO_0834 - alcohol dehydrogenase, zinc-containing 817 47.85 -2 906604..907278 + 224 28868061 - PSPTO_0835 - riboflavin biosynthesis protein RibD domain-containing protein 818 45.75 -2 907344..907931 + 195 28868062 - PSPTO_0836 - hypothetical protein 819 43.95 -2 907933..908535 + 200 28868063 - PSPTO_0837 - hypothetical protein 820 52.76 -1 908556..909749 + 397 28868064 - PSPTO_0838 - major facilitator family transporter 821 50.12 -2 910795..911211 + 138 28868065 - PSPTO_0840 - hypothetical protein 822 48.33 -2 911777..912136 + 119 28868066 - PSPTO_0842 - ISPsy5, Orf1 823 54.19 -1 912397..913374 - 325 28868067 - PSPTO_0844 - ISPssy, transposase 824 49.86 -2 916047..916415 - 122 28868068 - PSPTO_0847 - hypothetical protein 825 57.71 0 916412..917785 - 457 28868069 - PSPTO_0848 - hypothetical protein 826 59.42 0 917806..918744 - 312 28868070 - PSPTO_0849 - hypothetical protein 827 58.27 0 918744..919160 - 138 28868071 - PSPTO_0850 - hypothetical protein 828 51.53 -1 919701..920189 - 162 28868072 - PSPTO_0851 - hypothetical protein 829 55.72 0 920451..921692 - 413 28868073 hopAJ1 PSPTO_0852 - type III effector HopAJ1 830 53.33 -1 923360..923584 + 74 90818605 - PSPTO_5621 - PSPTO5621 831 55.07 0 923620..924033 + 137 28868074 - PSPTO_0853 - dnaK suppressor protein, putative 832 50.45 -1 924071..924292 + 73 28868075 - PSPTO_0854 - hypothetical protein 833 47.09 -2 925982..927079 + 365 28868076 - PSPTO_0855 - ParA family protein 834 51.89 -1 927082..927900 + 272 28868077 - PSPTO_0856 - hypothetical protein 835 57.87 0 928074..928778 - 234 28868078 - PSPTO_0857 - hypothetical protein 836 53.00 -1 928775..929074 - 99 28868079 - PSPTO_0858 - hypothetical protein 837 56.07 0 929071..931740 - 889 28868080 - PSPTO_0859 - hypothetical protein 838 57.89 0 932028..932483 - 151 28868081 - PSPTO_0860 - hypothetical protein 839 58.18 0 932461..933957 - 498 28868082 - PSPTO_0861 - hypothetical protein 840 58.33 0 933947..934870 - 307 28868083 - PSPTO_0862 - hypothetical protein 841 59.49 0 934867..935535 - 222 28868084 - PSPTO_0863 - hypothetical protein 842 57.78 0 935655..936464 - 269 28868085 - PSPTO_0864 - transposase/IS protein 843 59.24 0 936461..937483 - 340 28868086 - PSPTO_0865 - ISPsy4, transposase 844 59.56 0 937527..937892 - 121 28868087 - PSPTO_0866 - hypothetical protein 845 58.54 0 937908..938276 - 122 28868088 - PSPTO_0867 - hypothetical protein 846 60.67 0 938296..938445 - 49 28868089 - PSPTO_0868 - hypothetical protein 847 61.48 0 938532..938897 - 121 28868090 - PSPTO_0869 - hypothetical protein 848 56.46 0 939884..941068 + 394 28868092 - PSPTO_0871 - macrolide efflux protein, putative 849 50.41 -1 942019..943119 + 366 28868093 - PSPTO_0873 - amidinotransferase family protein 850 49.20 -2 943206..944459 + 417 28868094 - PSPTO_0874 - nikkomycin biosynthesis domain-containing protein 851 48.27 -2 944512..945756 + 414 28868095 - PSPTO_0875 - hypothetical protein 852 55.19 0 946222..948339 + 705 28868096 hopD1 PSPTO_0876 - type III effector HopD1 853 51.04 -1 948455..949798 - 447 28868097 hopQ1-1 PSPTO_0877 - type III effector HopQ1-1 854 59.12 0 949832..950149 + 105 28868098 - PSPTO_0878 - hypothetical protein 855 55.08 0 950387..951844 - 485 28868099 - PSPTO_0879 - hypothetical protein 856 56.80 0 951854..952603 - 249 28868100 - PSPTO_0880 - hypothetical protein 857 57.82 0 952643..953524 - 293 28868101 - PSPTO_0881 - hypothetical protein 858 50.75 -1 953552..954085 - 177 28868102 - PSPTO_0882 - hypothetical protein 859 59.40 0 954407..960280 + 1957 28868103 hopR1 PSPTO_0883 - type III effector HopR1 860 57.80 0 960352..961344 - 330 28868104 - PSPTO_0884 - LacI family transcription regulator 861 61.34 0 961425..962906 - 493 28868105 - PSPTO_0885 - sucrose-6-phosphate hydrolase 862 60.21 0 962924..964069 - 381 28868106 malK PSPTO_0886 - maltose/maltodextrin ABC transporter, ATP-binding protein 863 60.74 0 964097..964939 - 280 28868107 - PSPTO_0887 - sugar ABC transporter, permease protein 864 59.29 0 964936..965898 - 320 28868108 - PSPTO_0888 - sugar ABC transporter, permease protein 865 60.00 0 965920..967194 - 424 28868109 - PSPTO_0889 - sugar ABC transporter, periplasmic sugar-binding protein 866 58.60 0 967317..968939 + 540 28868110 scrY PSPTO_0890 - sucrose porin precursor 867 56.71 0 969035..969265 + 76 28868111 - PSPTO_0891 - hypothetical protein 868 62.21 0 969369..972419 - 1016 28868112 - PSPTO_0892 - autotransporter, putative 869 58.39 0 972764..974032 + 422 28868113 - PSPTO_0893 - outer membrane protein P1, putative 870 49.10 -2 974212..974712 + 166 28868114 - PSPTO_0894 - putative lipoprotein 871 50.30 -2 974837..975343 - 168 28868115 - PSPTO_0895 - hypothetical protein 58.61 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0