version 1.0
Pseudomonas syringae pv. tomato str. DC3000, complete genome - 1..6397126 5475 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 615 53.13 -1 694921..695607 + 228 28867860 rpsC PSPTO_0632 - 30S ribosomal protein S3 616 57.25 0 695620..696033 + 137 28867861 rplP PSPTO_0633 - 50S ribosomal protein L16 617 52.08 -1 696033..696224 + 63 28867862 rpmC PSPTO_0634 - 50S ribosomal protein L29 618 52.81 -1 696227..696493 + 88 28867863 rpsQ PSPTO_0635 - 30S ribosomal protein S17 619 54.47 0 696517..696885 + 122 28867864 rplN PSPTO_0636 - 50S ribosomal protein L14 620 51.75 -1 696897..697211 + 104 28867865 rplX PSPTO_0637 - 50S ribosomal protein L24 621 51.85 -1 697232..697771 + 179 28867866 rplE PSPTO_0638 - 50S ribosomal protein L5 622 56.54 0 697785..698090 + 101 28867867 rpsN PSPTO_0639 - 30S ribosomal protein S14 623 54.20 -1 698305..698697 + 130 28867868 rpsH PSPTO_0640 - 30S ribosomal protein S8 624 55.24 0 698710..699243 + 177 28867869 rplF PSPTO_0641 - 50S ribosomal protein L6 625 58.97 0 699254..699604 + 116 28867870 rplR PSPTO_0642 - 50S ribosomal protein L18 626 53.49 -1 699608..700108 + 166 28867871 rpsE PSPTO_0643 - 30S ribosomal protein S5 627 49.72 -2 700111..700287 + 58 28867872 rpmD PSPTO_0644 - 50S ribosomal protein L30 628 57.70 0 700291..700725 + 144 28867873 rplO PSPTO_0645 - 50S ribosomal protein L15 629 54.98 0 700726..702060 + 444 28867874 secY PSPTO_0646 - preprotein translocase subunit SecY 630 50.43 -1 702089..702205 + 38 28867875 rpmJ PSPTO_0647 - 50S ribosomal protein L36 631 54.34 -1 702336..702692 + 118 28867876 rpsM PSPTO_0648 - 30S ribosomal protein S13 632 56.67 0 702723..703112 + 129 28867877 rpsK PSPTO_0649 - 30S ribosomal protein S11 633 53.46 -1 703131..703751 + 206 28867878 rpsD PSPTO_0650 - 30S ribosomal protein S4 634 55.49 0 703774..704775 + 333 28867879 rpoA PSPTO_0651 - DNA-directed RNA polymerase subunit alpha 635 55.56 0 704817..705203 + 128 28867880 rplQ PSPTO_0652 - 50S ribosomal protein L17 636 54.62 0 705466..705930 + 154 28867881 - PSPTO_0653 - bacterioferritin 637 59.11 0 706024..709002 - 992 28867882 uvrA PSPTO_0654 - excinuclease ABC subunit A 638 60.50 0 708988..710382 + 464 28867883 - PSPTO_0655 - major facilitator family transporter 639 59.12 0 710392..710961 + 189 28867884 ssB PSPTO_0656 - single-strand DNA-binding protein 640 54.82 0 711177..711767 - 196 28867885 - PSPTO_0657 - hypothetical protein 641 49.63 -2 711853..712398 + 181 28867886 - PSPTO_0658 - hypothetical protein 642 60.89 0 712538..713281 - 247 28867887 - PSPTO_0659 - inositol monophosphatase family protein 643 60.24 0 713278..714039 - 253 28867888 - PSPTO_0660 - glycerophosphoryl diester phosphodiesterase, putative 644 62.87 +1 714046..715152 - 368 28867889 ugpC PSPTO_0661 - glycerol-3-phosphate ABC transporter, ATP-binding protein 645 61.74 0 715149..716042 - 297 28867890 ugpE PSPTO_0662 - glycerol-3-phosphate ABC transporter, permease protein 646 59.51 0 716039..716932 - 297 28867891 ugpA PSPTO_0663 - glycerol-3-phosphate ABC transporter, permease protein 647 60.75 0 716929..718365 - 478 28867892 ugpB PSPTO_0664 - glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein 648 60.04 0 718531..719661 + 376 28867893 - PSPTO_0665 - ROK family protein 649 52.68 -1 719689..720210 - 173 28867894 - PSPTO_0666 - hypothetical protein 650 56.68 0 720816..721586 - 256 28867895 - PSPTO_0667 - short chain dehydrogenase/reductase family oxidoreductase 651 54.86 0 721761..722429 - 222 28867896 - PSPTO_0668 - hypothetical protein 652 48.33 -2 723766..724125 + 119 28867897 - PSPTO_0669 - ISPsy5, Orf1 653 56.31 0 724143..725696 + 517 28867898 - PSPTO_0670 - ISPsy5, transposase 654 59.56 0 726055..728361 - 768 28867899 - PSPTO_0671 - TonB-dependent receptor, putative 655 63.21 +1 728432..728836 - 134 28867900 exbD-2 PSPTO_0672 - TonB system transport protein ExbD 656 62.34 0 728838..729530 - 230 28867901 exbB-2 PSPTO_0673 - TonB system transport protein ExbB 657 67.29 +2 729541..730344 - 267 28867902 - PSPTO_0674 - TonB domain-containing protein 658 59.34 0 730513..731331 - 272 28867903 - PSPTO_0675 - arylesterase 659 60.94 0 731587..733890 + 767 28867904 - PSPTO_0676 - mechanosensitive ion channel family protein 660 63.14 +1 734058..734936 + 292 28867905 - PSPTO_0677 - lipopolysaccharide biosynthesis protein, putative 661 60.43 0 734929..735858 + 309 28867906 - PSPTO_0678 - NAD-dependent epimerase/dehydratase family protein 662 59.68 0 736029..736715 - 228 28867907 - PSPTO_0679 - outer membrane protein OmpW 663 59.05 0 736819..737343 - 174 28867908 - PSPTO_0680 - putative lipoprotein 664 60.66 0 737352..738617 - 421 28867909 - PSPTO_0681 - permease, putative 665 62.45 0 738619..739329 - 236 28867910 - PSPTO_0682 - ABC transporter, ATP-binding protein 666 57.99 0 739399..739986 - 195 28867911 - PSPTO_0683 - hypothetical protein 667 56.16 0 740161..740712 + 183 28867912 - PSPTO_0684 - hypothetical protein 668 63.59 +1 740788..741144 + 118 28867913 - PSPTO_0685 - hypothetical protein 669 59.34 0 741199..742071 - 290 28867914 trx-1 PSPTO_0686 - thioredoxin 670 64.07 +1 742244..742897 - 217 28867915 - PSPTO_0687 - hypothetical protein 671 63.11 +1 742894..743343 - 149 28867916 - PSPTO_0688 - putative lipoprotein 672 62.37 0 743520..743984 + 154 28867917 - PSPTO_0689 - transcriptional regulator NrdR 673 65.45 +1 743981..745126 + 381 28867918 ribD PSPTO_0690 - riboflavin biosynthesis protein RibD 674 61.24 0 745174..745836 + 220 28867919 ribE PSPTO_0691 - riboflavin synthase subunit alpha 675 60.90 0 745854..746945 + 363 28867920 ribBA-1 PSPTO_0692 - bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein 676 59.96 0 747074..747550 + 158 28867921 ribH-1 PSPTO_0693 - riboflavin synthase subunit beta 677 57.63 0 747547..748044 + 165 28867922 nusB PSPTO_0694 - transcription antitermination protein NusB 678 64.08 +1 748061..749026 + 321 28867923 thiL PSPTO_0695 - thiamine monophosphate kinase 679 60.06 0 749113..749778 + 221 28867924 ribA PSPTO_0696 - GTP cyclohydrolase II 680 61.15 0 749775..750191 + 138 28867925 - PSPTO_0697 - hypothetical protein 681 61.66 0 750560..752455 - 631 28867926 dxs PSPTO_0698 - 1-deoxy-D-xylulose-5-phosphate synthase 682 64.41 +1 752619..753506 - 295 28867927 ispA PSPTO_0699 - geranyltranstransferase 683 58.94 0 753503..753748 - 81 28867928 xseB PSPTO_0700 - exodeoxyribonuclease VII small subunit 684 60.75 0 753852..755018 - 388 28867929 metC-1 PSPTO_0701 - cystathionine beta-lyase 685 56.67 0 755088..756107 - 339 28867930 - PSPTO_0702 - hypothetical protein 686 58.80 0 756309..757223 - 304 28867931 - PSPTO_0703 - putative glutathione S-transferase YghU 687 52.38 -1 757479..758255 + 258 28867932 - PSPTO_0704 - O-antigen ABC transporter, permease protein, putative 688 51.77 -1 758252..758956 + 234 28867933 - PSPTO_0705 - O-antigen ABC transporter, ATP-binding protein 689 54.72 0 759038..759799 + 253 28867934 - PSPTO_0706 - lipopolysaccharide biosynthesis protein, putative 690 55.93 0 759801..760415 + 204 28867935 - PSPTO_0707 - hypothetical protein 691 53.52 -1 760423..761061 + 212 28867936 - PSPTO_0708 - HAD-superfamily hydrolase 692 54.77 0 761067..761789 + 240 28867937 - PSPTO_0709 - hypothetical protein 693 55.89 0 761810..762106 + 98 28867938 - PSPTO_0710 - hypothetical protein 694 54.45 -1 762110..763885 + 591 28867939 - PSPTO_0711 - hypothetical protein 695 52.31 -1 763882..764487 + 201 28867940 - PSPTO_0712 - hypothetical protein 696 55.27 0 764541..765584 + 347 28867941 - PSPTO_0713 - hypothetical protein 697 55.80 0 765763..768054 + 763 28867942 - PSPTO_0714 - autotransporter, putative 698 58.40 0 768108..768905 + 265 28867943 - PSPTO_0715 - hypothetical protein 699 50.18 -2 768928..769200 - 90 28867944 - PSPTO_0716 - DNA-binding protein 700 53.91 -1 769224..769466 - 80 28867945 - PSPTO_0717 - DNA-binding protein 701 55.64 0 769587..769985 + 132 28867946 - PSPTO_0718 - hypothetical protein 702 48.59 -2 769966..770142 + 58 28867947 - PSPTO_0719 - hypothetical protein 703 56.30 0 770144..770413 + 89 28867948 - PSPTO_0720 - hypothetical protein 704 58.20 0 770709..771440 - 243 28867949 - PSPTO_0721 - transcriptional regulator, putative 705 57.58 0 771799..772326 - 175 28867950 ppa-1 PSPTO_0722 - inorganic pyrophosphatase 706 62.35 0 772437..773246 - 269 28867951 - PSPTO_0723 - hypothetical protein 707 62.04 0 773250..773897 - 215 28867952 - PSPTO_0724 - DedA family protein 708 53.08 -1 774090..774560 - 156 28867953 - PSPTO_0725 - acetyltransferase 709 63.31 +1 774632..775495 - 287 28867954 eutC PSPTO_0726 - ethanolamine ammonia-lyase small subunit 710 61.72 0 775492..776886 - 464 28867955 eutB PSPTO_0727 - ethanolamine ammonia-lyase, heavy subunit 711 60.82 0 777182..778702 - 506 28867956 - PSPTO_0728 - aldehyde dehydrogenase family protein 712 60.96 0 778928..780277 + 449 28867957 mpl PSPTO_0729 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 713 61.90 0 780274..780903 + 209 28867958 - PSPTO_0730 - aromatic acid decarboxylase 714 64.98 +1 780884..781180 + 98 28867959 - PSPTO_0731 - putative lipoprotein 58.61 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.