version 1.0
Pseudomonas syringae pv. tomato str. DC3000, complete genome - 1..6397126 5475 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 571 53.83 -1 645345..647486 + 713 28867815 - PSPTO_0587 - phage integrase family site specific recombinase 572 47.34 -2 647588..648244 - 218 28867816 hopH1 PSPTO_0588 - type III effector HopH1 573 46.91 -2 648896..649705 - 269 28867817 hopC1 PSPTO_0589 - type III effector HopC1 574 56.86 0 649880..650980 + 366 28867819 - PSPTO_0591 - impB/mucB/samB family protein 575 58.83 0 651383..651982 + 199 28867820 trpG PSPTO_0592 - anthranilate synthase component II 576 60.57 0 652004..653053 + 349 28867821 trpD PSPTO_0593 - anthranilate phosphoribosyltransferase 577 60.10 0 653050..653886 + 278 28867822 trpC PSPTO_0594 - indole-3-glycerol-phosphate synthase 578 62.50 0 653921..654616 + 231 28867823 - PSPTO_0595 - hypothetical protein 579 59.38 0 654628..655272 - 214 28867824 crp PSPTO_0596 - cAMP-regulatory protein 580 56.26 0 655482..655904 + 140 28867825 - PSPTO_0597 - OsmC/Ohr family protein 581 51.95 -1 656147..656941 + 264 28867826 speD PSPTO_0598 - S-adenosylmethionine decarboxylase 582 61.88 0 657002..657649 - 215 28867827 - PSPTO_0599 - hypothetical protein 583 55.46 0 657771..658109 - 112 28867828 - PSPTO_0600 - HIT family protein 584 59.97 0 658212..658988 - 258 28867829 - PSPTO_0601 - short chain dehydrogenase/reductase family oxidoreductase 585 59.70 0 659042..659974 - 310 28867830 - PSPTO_0602 - hypothetical protein 586 55.94 0 660073..660501 - 142 28867831 - PSPTO_0603 - hypothetical protein 587 61.93 0 660635..661669 + 344 28867832 argC PSPTO_0604 - N-acetyl-gamma-glutamyl-phosphate reductase 588 54.70 0 661872..662222 + 116 28867833 - PSPTO_0605 - iron-sulfur cluster insertion protein ErpA 589 59.94 0 662286..663356 - 356 28867834 - PSPTO_0606 - anhydro-N-acetylmuramic acid kinase 590 56.84 0 663384..664808 - 474 28867835 - PSPTO_0607 - M24/M37 family peptidase 591 30.39 -2 664805..664906 - 33 28867836 - PSPTO_0608 - hypothetical protein 592 56.44 0 665010..666221 + 403 28867837 tyrS PSPTO_0609 - tyrosyl-tRNA synthetase 593 56.04 0 672113..673072 + 319 28867838 birA PSPTO_0610 - biotin--protein ligase 594 55.73 0 673062..673811 + 249 28867839 - PSPTO_0611 - pantothenate kinase 595 52.91 -1 673819..674247 + 142 28867840 - PSPTO_0612 - hypothetical protein 596 51.22 -1 674963..675331 + 122 28867841 secE PSPTO_0613 - preprotein translocase subunit SecE 597 53.00 -1 675341..675874 + 177 28867842 nusG PSPTO_0614 - transcription antitermination protein NusG 598 54.40 -1 675993..676424 + 143 28867843 rplK PSPTO_0615 - 50S ribosomal protein L11 599 55.17 0 676424..677119 + 231 28867844 rplA PSPTO_0616 - 50S ribosomal protein L1 600 55.09 0 677322..677822 + 166 28867845 rplJ PSPTO_0617 - 50S ribosomal protein L10 601 50.82 -1 677902..678267 + 121 28867846 rplL PSPTO_0618 - 50S ribosomal protein L7/L12 602 55.52 0 678489..682562 + 1357 28867847 rpoB PSPTO_0619 - DNA-directed RNA polymerase subunit beta 603 55.69 0 682627..686826 + 1399 28867848 rpoC PSPTO_0620 - DNA-directed RNA polymerase subunit beta' 604 55.11 0 687024..687395 + 123 28867849 rpsL PSPTO_0621 - 30S ribosomal protein S12 605 56.26 0 687518..687988 + 156 28867850 rpsG PSPTO_0622 - 30S ribosomal protein S7 606 54.27 -1 688019..690124 + 701 28867851 fusA PSPTO_0623 - elongation factor G 607 55.86 0 690156..691349 + 397 28867852 tuf PSPTO_0624 - elongation factor Tu 608 53.21 -1 691491..691802 + 103 28867853 rpsJ PSPTO_0625 - 30S ribosomal protein S10 609 55.97 0 691884..692519 + 211 28867854 rplC PSPTO_0626 - 50S ribosomal protein L3 610 54.23 -1 692532..693134 + 200 28867855 rplD PSPTO_0627 - 50S ribosomal protein L4 611 50.67 -1 693131..693430 + 99 28867856 rplW PSPTO_0628 - 50S ribosomal protein L23 612 55.64 0 693445..694269 + 274 28867857 rplB PSPTO_0629 - 50S ribosomal protein L2 613 50.00 -2 694286..694561 + 91 28867858 rpsS PSPTO_0630 - 30S ribosomal protein S19 614 57.06 0 694575..694907 + 110 28867859 rplV PSPTO_0631 - 50S ribosomal protein L22 615 53.13 -1 694921..695607 + 228 28867860 rpsC PSPTO_0632 - 30S ribosomal protein S3 616 57.25 0 695620..696033 + 137 28867861 rplP PSPTO_0633 - 50S ribosomal protein L16 617 52.08 -1 696033..696224 + 63 28867862 rpmC PSPTO_0634 - 50S ribosomal protein L29 618 52.81 -1 696227..696493 + 88 28867863 rpsQ PSPTO_0635 - 30S ribosomal protein S17 619 54.47 0 696517..696885 + 122 28867864 rplN PSPTO_0636 - 50S ribosomal protein L14 620 51.75 -1 696897..697211 + 104 28867865 rplX PSPTO_0637 - 50S ribosomal protein L24 621 51.85 -1 697232..697771 + 179 28867866 rplE PSPTO_0638 - 50S ribosomal protein L5 622 56.54 0 697785..698090 + 101 28867867 rpsN PSPTO_0639 - 30S ribosomal protein S14 623 54.20 -1 698305..698697 + 130 28867868 rpsH PSPTO_0640 - 30S ribosomal protein S8 624 55.24 0 698710..699243 + 177 28867869 rplF PSPTO_0641 - 50S ribosomal protein L6 625 58.97 0 699254..699604 + 116 28867870 rplR PSPTO_0642 - 50S ribosomal protein L18 626 53.49 -1 699608..700108 + 166 28867871 rpsE PSPTO_0643 - 30S ribosomal protein S5 627 49.72 -2 700111..700287 + 58 28867872 rpmD PSPTO_0644 - 50S ribosomal protein L30 628 57.70 0 700291..700725 + 144 28867873 rplO PSPTO_0645 - 50S ribosomal protein L15 629 54.98 0 700726..702060 + 444 28867874 secY PSPTO_0646 - preprotein translocase subunit SecY 630 50.43 -1 702089..702205 + 38 28867875 rpmJ PSPTO_0647 - 50S ribosomal protein L36 631 54.34 -1 702336..702692 + 118 28867876 rpsM PSPTO_0648 - 30S ribosomal protein S13 632 56.67 0 702723..703112 + 129 28867877 rpsK PSPTO_0649 - 30S ribosomal protein S11 633 53.46 -1 703131..703751 + 206 28867878 rpsD PSPTO_0650 - 30S ribosomal protein S4 634 55.49 0 703774..704775 + 333 28867879 rpoA PSPTO_0651 - DNA-directed RNA polymerase subunit alpha 635 55.56 0 704817..705203 + 128 28867880 rplQ PSPTO_0652 - 50S ribosomal protein L17 636 54.62 0 705466..705930 + 154 28867881 - PSPTO_0653 - bacterioferritin 637 59.11 0 706024..709002 - 992 28867882 uvrA PSPTO_0654 - excinuclease ABC subunit A 638 60.50 0 708988..710382 + 464 28867883 - PSPTO_0655 - major facilitator family transporter 639 59.12 0 710392..710961 + 189 28867884 ssB PSPTO_0656 - single-strand DNA-binding protein 640 54.82 0 711177..711767 - 196 28867885 - PSPTO_0657 - hypothetical protein 641 49.63 -2 711853..712398 + 181 28867886 - PSPTO_0658 - hypothetical protein 642 60.89 0 712538..713281 - 247 28867887 - PSPTO_0659 - inositol monophosphatase family protein 643 60.24 0 713278..714039 - 253 28867888 - PSPTO_0660 - glycerophosphoryl diester phosphodiesterase, putative 644 62.87 +1 714046..715152 - 368 28867889 ugpC PSPTO_0661 - glycerol-3-phosphate ABC transporter, ATP-binding protein 645 61.74 0 715149..716042 - 297 28867890 ugpE PSPTO_0662 - glycerol-3-phosphate ABC transporter, permease protein 646 59.51 0 716039..716932 - 297 28867891 ugpA PSPTO_0663 - glycerol-3-phosphate ABC transporter, permease protein 647 60.75 0 716929..718365 - 478 28867892 ugpB PSPTO_0664 - glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein 648 60.04 0 718531..719661 + 376 28867893 - PSPTO_0665 - ROK family protein 649 52.68 -1 719689..720210 - 173 28867894 - PSPTO_0666 - hypothetical protein 650 56.68 0 720816..721586 - 256 28867895 - PSPTO_0667 - short chain dehydrogenase/reductase family oxidoreductase 651 54.86 0 721761..722429 - 222 28867896 - PSPTO_0668 - hypothetical protein 652 48.33 -2 723766..724125 + 119 28867897 - PSPTO_0669 - ISPsy5, Orf1 653 56.31 0 724143..725696 + 517 28867898 - PSPTO_0670 - ISPsy5, transposase 654 59.56 0 726055..728361 - 768 28867899 - PSPTO_0671 - TonB-dependent receptor, putative 655 63.21 +1 728432..728836 - 134 28867900 exbD-2 PSPTO_0672 - TonB system transport protein ExbD 656 62.34 0 728838..729530 - 230 28867901 exbB-2 PSPTO_0673 - TonB system transport protein ExbB 657 67.29 +2 729541..730344 - 267 28867902 - PSPTO_0674 - TonB domain-containing protein 658 59.34 0 730513..731331 - 272 28867903 - PSPTO_0675 - arylesterase 659 60.94 0 731587..733890 + 767 28867904 - PSPTO_0676 - mechanosensitive ion channel family protein 660 63.14 +1 734058..734936 + 292 28867905 - PSPTO_0677 - lipopolysaccharide biosynthesis protein, putative 661 60.43 0 734929..735858 + 309 28867906 - PSPTO_0678 - NAD-dependent epimerase/dehydratase family protein 662 59.68 0 736029..736715 - 228 28867907 - PSPTO_0679 - outer membrane protein OmpW 663 59.05 0 736819..737343 - 174 28867908 - PSPTO_0680 - putative lipoprotein 664 60.66 0 737352..738617 - 421 28867909 - PSPTO_0681 - permease, putative 665 62.45 0 738619..739329 - 236 28867910 - PSPTO_0682 - ABC transporter, ATP-binding protein 666 57.99 0 739399..739986 - 195 28867911 - PSPTO_0683 - hypothetical protein 667 56.16 0 740161..740712 + 183 28867912 - PSPTO_0684 - hypothetical protein 668 63.59 +1 740788..741144 + 118 28867913 - PSPTO_0685 - hypothetical protein 669 59.34 0 741199..742071 - 290 28867914 trx-1 PSPTO_0686 - thioredoxin 670 64.07 +1 742244..742897 - 217 28867915 - PSPTO_0687 - hypothetical protein 58.61 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0