version 1.0
Pseudomonas syringae pv. tomato str. DC3000, complete genome - 1..6397126 5475 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 515 53.83 -1 579598..580119 - 173 28867759 - PSPTO_0530 - hypothetical protein 516 52.29 -1 580669..581433 + 254 28867760 - PSPTO_0531 - type IV secretion system protein, putative 517 52.55 -1 581917..582171 + 84 28867761 - PSPTO_0532 - putative lipoprotein 518 54.19 -1 583081..584058 + 325 28867762 - PSPTO_0534 - ISPssy, transposase 519 55.80 0 584780..586021 - 413 28867763 - PSPTO_0535 - phage integrase family site specific recombinase 520 59.20 0 586100..588589 - 829 28867764 - PSPTO_0536 - sensory box protein 521 57.16 0 588846..590696 - 616 28867765 rpoD PSPTO_0537 - RNA polymerase sigma factor RpoD 522 59.57 0 590764..592722 - 652 28867766 dnaG PSPTO_0538 - DNA primase 523 55.56 0 593192..593407 - 71 28867767 rpsU PSPTO_0539 - 30S ribosomal protein S21 524 63.94 +1 593605..594630 + 341 28867768 gcp PSPTO_0540 - O-sialoglycoprotein endopeptidase 525 65.46 +1 594683..595261 - 192 28867769 - PSPTO_0541 - putative glycerol-3-phosphate acyltransferase PlsY 526 60.45 0 595327..595680 + 117 28867770 folB-1 PSPTO_0542 - dihydroneopterin aldolase 527 59.05 0 595671..596195 + 174 28867771 folK-1 PSPTO_0543 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase 528 62.28 0 596465..597694 - 409 28867772 cca PSPTO_0544 - multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 529 57.01 0 597792..599354 - 520 28867773 - PSPTO_0545 - hypothetical protein 530 56.76 0 599351..600622 - 423 28867774 - PSPTO_0546 - hypothetical protein 531 55.28 0 600744..602666 - 640 28867775 - PSPTO_0547 - hypothetical protein 532 57.94 0 602952..603272 - 106 28867776 - PSPTO_0548 - thiosulfate sulfurtransferase 533 58.80 0 603269..604171 - 300 28867777 apaH PSPTO_0549 - diadenosine tetraphosphatase 534 57.74 0 604171..604551 - 126 28867778 apaG PSPTO_0550 - ApaG 535 60.22 0 604665..605471 - 268 28867779 ksgA PSPTO_0551 - dimethyladenosine transferase 536 63.94 +1 605468..606457 - 329 28867780 pdxA PSPTO_0552 - 4-hydroxythreonine-4-phosphate dehydrogenase 537 58.43 0 606454..607740 - 428 28867781 surA PSPTO_0553 - peptidyl-prolyl cis-trans isomerase SurA 538 57.62 0 607757..610474 - 905 28867782 - PSPTO_0554 - organic solvent tolerance protein, putative 539 57.41 0 610670..611695 + 341 28867783 - PSPTO_0555 - hypothetical protein 540 62.72 0 611814..612446 + 210 28867784 - PSPTO_0556 - nucleotidyltransferase family protein 541 63.93 +1 612447..613214 + 255 28867785 - PSPTO_0557 - DnaJ-like protein DjlA, putative 542 61.66 0 613245..614243 - 332 28867786 - PSPTO_0558 - hypothetical protein 543 60.91 0 614343..616358 + 671 28867787 - PSPTO_0559 - sensory box histidine kinase 544 59.68 0 616355..616984 + 209 28867788 - PSPTO_0560 - LuxR family DNA-binding response regulator 545 60.92 0 617232..617405 + 57 28867789 - PSPTO_0561 - hypothetical protein 546 60.62 0 617525..618649 + 374 28867790 - PSPTO_0562 - polyamine ABC transporter, ATP-binding protein 547 58.74 0 618732..619766 + 344 28867791 - PSPTO_0563 - polyamine ABC transporter, periplasmic polyamine-binding protein 548 60.74 0 619844..621091 + 415 28867792 - PSPTO_0564 - polyamine ABC transporter, permease protein 549 61.07 0 621103..621924 + 273 28867793 - PSPTO_0565 - polyamine ABC transporter, permease protein 550 59.70 0 622080..622754 + 224 28867794 rpe PSPTO_0566 - ribulose-phosphate 3-epimerase 551 61.42 0 622769..623569 + 266 28867795 gph-1 PSPTO_0567 - phosphoglycolate phosphatase 552 59.99 0 623639..625120 + 493 28867796 trpE PSPTO_0568 - anthranilate synthase component I 553 61.47 0 625342..627264 - 640 28867797 - PSPTO_0569 - autotransporting lipase 554 54.68 0 627371..627637 - 88 28867798 - PSPTO_0570 - transcriptional regulator PrtN, putative 555 60.19 0 628136..628783 - 215 28867799 - PSPTO_0571 - repressor protein c2 556 50.78 -1 629847..630677 + 276 28867800 - PSPTO_0572 - bacteriocin, putative 557 59.24 0 631257..631727 + 156 28867801 - PSPTO_0573 - hypothetical protein 558 62.87 +1 631705..632046 + 113 28867802 - PSPTO_0574 - putative lipoprotein 559 61.76 0 632092..632682 + 196 28867803 - PSPTO_0575 - hypothetical protein 560 60.85 0 632679..632867 + 62 28867804 - PSPTO_0576 - hypothetical protein 561 60.72 0 632886..634382 + 498 28867805 - PSPTO_0577 - tail sheath protein, putative 562 56.61 0 634443..634790 + 115 28867806 - PSPTO_0578 - hypothetical protein 563 57.91 0 634787..635083 + 98 28867807 - PSPTO_0579 - sigma factor domain-containing protein 564 60.61 0 635214..637358 + 714 28867808 - PSPTO_0580 - tail tape meausure protein 565 58.77 0 637355..639178 + 607 28867809 - PSPTO_0581 - DNA circulation protein, putative 566 50.93 -1 639401..640042 + 213 28867810 - PSPTO_0582 - hypothetical protein 567 47.10 -2 640284..640973 - 229 28867811 - PSPTO_0583 - hypothetical protein 568 51.80 -1 641322..642014 - 230 28867812 - PSPTO_0584 - Sir2 family transcriptional regulator 569 50.43 -1 642156..642623 - 155 28867813 - PSPTO_0585 - hypothetical protein 570 58.65 0 644311..645321 + 336 28867814 - PSPTO_0586 - phage integrase family site specific recombinase 571 53.83 -1 645345..647486 + 713 28867815 - PSPTO_0587 - phage integrase family site specific recombinase 572 47.34 -2 647588..648244 - 218 28867816 hopH1 PSPTO_0588 - type III effector HopH1 573 46.91 -2 648896..649705 - 269 28867817 hopC1 PSPTO_0589 - type III effector HopC1 574 56.86 0 649880..650980 + 366 28867819 - PSPTO_0591 - impB/mucB/samB family protein 575 58.83 0 651383..651982 + 199 28867820 trpG PSPTO_0592 - anthranilate synthase component II 576 60.57 0 652004..653053 + 349 28867821 trpD PSPTO_0593 - anthranilate phosphoribosyltransferase 577 60.10 0 653050..653886 + 278 28867822 trpC PSPTO_0594 - indole-3-glycerol-phosphate synthase 578 62.50 0 653921..654616 + 231 28867823 - PSPTO_0595 - hypothetical protein 579 59.38 0 654628..655272 - 214 28867824 crp PSPTO_0596 - cAMP-regulatory protein 580 56.26 0 655482..655904 + 140 28867825 - PSPTO_0597 - OsmC/Ohr family protein 581 51.95 -1 656147..656941 + 264 28867826 speD PSPTO_0598 - S-adenosylmethionine decarboxylase 582 61.88 0 657002..657649 - 215 28867827 - PSPTO_0599 - hypothetical protein 583 55.46 0 657771..658109 - 112 28867828 - PSPTO_0600 - HIT family protein 584 59.97 0 658212..658988 - 258 28867829 - PSPTO_0601 - short chain dehydrogenase/reductase family oxidoreductase 585 59.70 0 659042..659974 - 310 28867830 - PSPTO_0602 - hypothetical protein 586 55.94 0 660073..660501 - 142 28867831 - PSPTO_0603 - hypothetical protein 587 61.93 0 660635..661669 + 344 28867832 argC PSPTO_0604 - N-acetyl-gamma-glutamyl-phosphate reductase 588 54.70 0 661872..662222 + 116 28867833 - PSPTO_0605 - iron-sulfur cluster insertion protein ErpA 589 59.94 0 662286..663356 - 356 28867834 - PSPTO_0606 - anhydro-N-acetylmuramic acid kinase 590 56.84 0 663384..664808 - 474 28867835 - PSPTO_0607 - M24/M37 family peptidase 591 30.39 -2 664805..664906 - 33 28867836 - PSPTO_0608 - hypothetical protein 592 56.44 0 665010..666221 + 403 28867837 tyrS PSPTO_0609 - tyrosyl-tRNA synthetase 593 56.04 0 672113..673072 + 319 28867838 birA PSPTO_0610 - biotin--protein ligase 594 55.73 0 673062..673811 + 249 28867839 - PSPTO_0611 - pantothenate kinase 595 52.91 -1 673819..674247 + 142 28867840 - PSPTO_0612 - hypothetical protein 596 51.22 -1 674963..675331 + 122 28867841 secE PSPTO_0613 - preprotein translocase subunit SecE 597 53.00 -1 675341..675874 + 177 28867842 nusG PSPTO_0614 - transcription antitermination protein NusG 598 54.40 -1 675993..676424 + 143 28867843 rplK PSPTO_0615 - 50S ribosomal protein L11 599 55.17 0 676424..677119 + 231 28867844 rplA PSPTO_0616 - 50S ribosomal protein L1 600 55.09 0 677322..677822 + 166 28867845 rplJ PSPTO_0617 - 50S ribosomal protein L10 601 50.82 -1 677902..678267 + 121 28867846 rplL PSPTO_0618 - 50S ribosomal protein L7/L12 602 55.52 0 678489..682562 + 1357 28867847 rpoB PSPTO_0619 - DNA-directed RNA polymerase subunit beta 603 55.69 0 682627..686826 + 1399 28867848 rpoC PSPTO_0620 - DNA-directed RNA polymerase subunit beta' 604 55.11 0 687024..687395 + 123 28867849 rpsL PSPTO_0621 - 30S ribosomal protein S12 605 56.26 0 687518..687988 + 156 28867850 rpsG PSPTO_0622 - 30S ribosomal protein S7 606 54.27 -1 688019..690124 + 701 28867851 fusA PSPTO_0623 - elongation factor G 607 55.86 0 690156..691349 + 397 28867852 tuf PSPTO_0624 - elongation factor Tu 608 53.21 -1 691491..691802 + 103 28867853 rpsJ PSPTO_0625 - 30S ribosomal protein S10 609 55.97 0 691884..692519 + 211 28867854 rplC PSPTO_0626 - 50S ribosomal protein L3 610 54.23 -1 692532..693134 + 200 28867855 rplD PSPTO_0627 - 50S ribosomal protein L4 611 50.67 -1 693131..693430 + 99 28867856 rplW PSPTO_0628 - 50S ribosomal protein L23 612 55.64 0 693445..694269 + 274 28867857 rplB PSPTO_0629 - 50S ribosomal protein L2 613 50.00 -2 694286..694561 + 91 28867858 rpsS PSPTO_0630 - 30S ribosomal protein S19 614 57.06 0 694575..694907 + 110 28867859 rplV PSPTO_0631 - 50S ribosomal protein L22 58.61 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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