version 1.0
Pseudomonas syringae pv. tomato str. DC3000, complete genome - 1..6397126 5475 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 453 50.64 -1 513782..513937 - 51 28867697 - PSPTO_0467 - hypothetical protein 454 55.81 0 514044..514301 + 85 28867698 - PSPTO_0468 - hypothetical protein 455 57.10 0 514298..514600 + 100 28867699 - PSPTO_0469 - hypothetical protein 456 60.92 0 514680..515393 - 237 28867700 - PSPTO_0470 - exonuclease, putative 457 60.14 0 515390..517258 - 622 28867701 - PSPTO_0471 - nucleotidyltransferase, putative 458 59.29 0 517608..518000 + 130 28867702 - PSPTO_0472 - response regulator 459 59.40 0 521328..522167 - 279 28867704 hopAS1 PSPTO_0474 - type III effector HopAS1 460 56.76 0 522206..522316 - 36 90818604 - PSPTO_5616 - hypothetical protein 461 55.09 0 522512..522943 - 143 28867705 - PSPTO_0475 - hypothetical protein 462 53.02 -1 522940..523386 - 148 28867706 - PSPTO_0476 - hypothetical protein 463 49.10 -2 523383..523826 - 147 28867707 - PSPTO_0477 - hypothetical protein 464 50.59 -1 523823..524749 - 308 28867708 - PSPTO_0478 - hypothetical protein 465 54.50 0 524756..525322 - 188 28867709 - PSPTO_0479 - hypothetical protein 466 60.70 0 525681..527858 - 725 28867710 glcB-1 PSPTO_0480 - malate synthase G 467 61.08 0 528181..528699 + 172 28867711 - PSPTO_0481 - ACT domain-containing protein 468 56.13 0 528719..529069 - 116 28867712 - PSPTO_0482 - hypothetical protein 469 62.39 0 529381..530268 - 295 28867713 rarD-1 PSPTO_0483 - rarD protein 470 60.31 0 530394..531368 - 324 28867714 - PSPTO_0484 - serine/threonine protein kinase 471 62.75 0 531564..532583 + 339 28867715 - PSPTO_0485 - LacI family transcriptional regulator 472 62.28 0 532567..533568 + 333 28867716 - PSPTO_0486 - ABC transporter, periplasmic substrate-binding protein 473 63.33 +1 533568..534437 + 289 28867717 - PSPTO_0487 - ABC transporter, permease protein 474 62.52 0 534434..535228 + 264 28867718 - PSPTO_0488 - ABC transporter, permease protein 475 62.93 +1 535225..536268 + 347 28867719 - PSPTO_0489 - ABC transporter, ATP-binding protein 476 60.91 0 536293..537126 + 277 28867720 - PSPTO_0490 - Ser/Thr protein phosphatase family protein 477 61.19 0 537253..539169 - 638 28867721 - PSPTO_0491 - Tat pathway signal sequence domain-containing protein 478 61.70 0 539251..540015 - 254 28867722 - PSPTO_0492 - molybdate transport regulator ModE, putative 479 60.68 0 540207..540941 - 244 28867723 - PSPTO_0493 - competence protein ComF, putative 480 60.72 0 541032..542090 + 352 28867724 bioB PSPTO_0494 - biotin synthetase 481 63.39 +1 542154..543344 + 396 28867725 bioF PSPTO_0495 - 8-amino-7-oxononanoate synthase 482 64.34 +1 543337..544068 + 243 28867726 bioH PSPTO_0496 - bioH protein 483 63.33 +1 544061..544870 + 269 28867727 bioC PSPTO_0497 - biotin synthesis protein BioC 484 61.67 0 544902..545582 + 226 28867728 bioD PSPTO_0498 - dithiobiotin synthetase 485 55.89 0 545737..546033 + 98 28867729 - PSPTO_0499 - hypothetical protein 486 60.19 0 546382..548187 + 601 28867730 - PSPTO_0500 - acyl-CoA dehydrogenase family protein 487 46.42 -2 548376..549170 - 264 28867731 hopU1 PSPTO_0501 - type III effector HopU1 488 47.97 -2 549423..550037 - 204 28867732 hopF2 PSPTO_0502 - type III effector HopF2 489 43.18 -2 550174..550569 - 131 28867733 shcF PSPTO_0503 - type III chaperone protein ShcF 490 59.72 0 552012..553307 + 431 28867734 - PSPTO_0505 - GGDEF domain-containing protein 491 59.08 0 553477..555255 + 592 28867735 - PSPTO_0506 - acyl-CoA dehydrogenase family protein 492 51.85 -1 555671..555832 + 53 28867736 - PSPTO_0507 - hypothetical protein 493 62.79 +1 555873..557705 - 610 28867737 - PSPTO_0508 - hypothetical protein 494 59.49 0 557668..558837 - 389 28867738 pqqE PSPTO_0509 - pyrroloquinoline quinone biosynthesis protein PqqE 495 52.19 -1 558830..559126 - 98 28867739 pqqD PSPTO_0510 - pyrroloquinoline quinone biosynthesis protein PqqD 496 60.32 0 559123..559878 - 251 28867740 pqqC PSPTO_0511 - pyrroloquinoline quinone biosynthesis protein PqqC 497 63.38 +1 559887..560798 - 303 28867741 pqqB PSPTO_0512 - pyrroloquinoline quinone biosynthesis protein PqqB 498 46.67 -2 560896..560970 - 24 28867742 pqqA PSPTO_0513 - coenzyme PQQ synthesis protein PqqA 499 61.84 0 561106..563445 - 779 28867743 pqqF PSPTO_0514 - coenzyme PQQ synthesis protein F 500 52.91 -1 563660..564175 + 171 28867744 - PSPTO_0515 - ISPsy8, transposase OrfA 501 52.18 -1 564232..565011 + 259 28867745 - PSPTO_0516 - ISPsy8, transposase OrfB 502 60.84 0 565108..565914 - 268 28867746 - PSPTO_0517 - carbon-nitrogen family hydrolase 503 60.86 0 565932..567566 - 544 28867747 - PSPTO_0518 - tryptophan 2-monooxygenase, putative 504 59.64 0 567763..568203 - 146 28867748 - PSPTO_0519 - AsnC family transcriptional regulator 505 60.72 0 568236..569312 - 358 28867749 - PSPTO_0520 - hypothetical protein 506 63.51 +1 569661..569945 + 94 28867750 - PSPTO_0521 - DNA-binding protein 507 58.44 0 569945..571171 + 408 28867751 - PSPTO_0522 - hypothetical protein 508 57.91 0 571196..572326 - 376 28867752 - PSPTO_0523 - Fic family protein 509 55.97 0 572573..573871 + 432 28867753 - PSPTO_0524 - M20/M25/M40 family peptidase 510 51.85 -1 574042..574635 - 197 28867754 - PSPTO_0525 - putative lipoprotein 511 53.52 -1 574681..574893 - 70 28867755 - PSPTO_0526 - hypothetical protein 512 52.33 -1 575375..577327 - 650 28867756 - PSPTO_0527 - hypothetical protein 513 50.68 -1 577324..578211 - 295 28867757 - PSPTO_0528 - hypothetical protein 514 50.94 -1 578208..579008 - 266 28867758 - PSPTO_0529 - hypothetical protein 515 53.83 -1 579598..580119 - 173 28867759 - PSPTO_0530 - hypothetical protein 516 52.29 -1 580669..581433 + 254 28867760 - PSPTO_0531 - type IV secretion system protein, putative 517 52.55 -1 581917..582171 + 84 28867761 - PSPTO_0532 - putative lipoprotein 518 54.19 -1 583081..584058 + 325 28867762 - PSPTO_0534 - ISPssy, transposase 519 55.80 0 584780..586021 - 413 28867763 - PSPTO_0535 - phage integrase family site specific recombinase 520 59.20 0 586100..588589 - 829 28867764 - PSPTO_0536 - sensory box protein 521 57.16 0 588846..590696 - 616 28867765 rpoD PSPTO_0537 - RNA polymerase sigma factor RpoD 522 59.57 0 590764..592722 - 652 28867766 dnaG PSPTO_0538 - DNA primase 523 55.56 0 593192..593407 - 71 28867767 rpsU PSPTO_0539 - 30S ribosomal protein S21 524 63.94 +1 593605..594630 + 341 28867768 gcp PSPTO_0540 - O-sialoglycoprotein endopeptidase 525 65.46 +1 594683..595261 - 192 28867769 - PSPTO_0541 - putative glycerol-3-phosphate acyltransferase PlsY 526 60.45 0 595327..595680 + 117 28867770 folB-1 PSPTO_0542 - dihydroneopterin aldolase 527 59.05 0 595671..596195 + 174 28867771 folK-1 PSPTO_0543 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase 528 62.28 0 596465..597694 - 409 28867772 cca PSPTO_0544 - multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 529 57.01 0 597792..599354 - 520 28867773 - PSPTO_0545 - hypothetical protein 530 56.76 0 599351..600622 - 423 28867774 - PSPTO_0546 - hypothetical protein 531 55.28 0 600744..602666 - 640 28867775 - PSPTO_0547 - hypothetical protein 532 57.94 0 602952..603272 - 106 28867776 - PSPTO_0548 - thiosulfate sulfurtransferase 533 58.80 0 603269..604171 - 300 28867777 apaH PSPTO_0549 - diadenosine tetraphosphatase 534 57.74 0 604171..604551 - 126 28867778 apaG PSPTO_0550 - ApaG 535 60.22 0 604665..605471 - 268 28867779 ksgA PSPTO_0551 - dimethyladenosine transferase 536 63.94 +1 605468..606457 - 329 28867780 pdxA PSPTO_0552 - 4-hydroxythreonine-4-phosphate dehydrogenase 537 58.43 0 606454..607740 - 428 28867781 surA PSPTO_0553 - peptidyl-prolyl cis-trans isomerase SurA 538 57.62 0 607757..610474 - 905 28867782 - PSPTO_0554 - organic solvent tolerance protein, putative 539 57.41 0 610670..611695 + 341 28867783 - PSPTO_0555 - hypothetical protein 540 62.72 0 611814..612446 + 210 28867784 - PSPTO_0556 - nucleotidyltransferase family protein 541 63.93 +1 612447..613214 + 255 28867785 - PSPTO_0557 - DnaJ-like protein DjlA, putative 542 61.66 0 613245..614243 - 332 28867786 - PSPTO_0558 - hypothetical protein 543 60.91 0 614343..616358 + 671 28867787 - PSPTO_0559 - sensory box histidine kinase 544 59.68 0 616355..616984 + 209 28867788 - PSPTO_0560 - LuxR family DNA-binding response regulator 545 60.92 0 617232..617405 + 57 28867789 - PSPTO_0561 - hypothetical protein 546 60.62 0 617525..618649 + 374 28867790 - PSPTO_0562 - polyamine ABC transporter, ATP-binding protein 547 58.74 0 618732..619766 + 344 28867791 - PSPTO_0563 - polyamine ABC transporter, periplasmic polyamine-binding protein 548 60.74 0 619844..621091 + 415 28867792 - PSPTO_0564 - polyamine ABC transporter, permease protein 549 61.07 0 621103..621924 + 273 28867793 - PSPTO_0565 - polyamine ABC transporter, permease protein 550 59.70 0 622080..622754 + 224 28867794 rpe PSPTO_0566 - ribulose-phosphate 3-epimerase 551 61.42 0 622769..623569 + 266 28867795 gph-1 PSPTO_0567 - phosphoglycolate phosphatase 552 59.99 0 623639..625120 + 493 28867796 trpE PSPTO_0568 - anthranilate synthase component I 58.61 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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