version 1.0
Pseudomonas syringae pv. tomato str. DC3000, complete genome - 1..6397126 5475 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 4117 61.88 0 4750298..4750987 - 229 28871359 rnc PSPTO_4217 - ribonuclease III 4118 47.09 -2 4750984..4751361 - 125 28871360 - PSPTO_4218 - hypothetical protein 4119 56.73 0 4751478..4752332 - 284 28871361 lepB PSPTO_4219 - signal peptidase I 4120 58.05 0 4752342..4754129 - 595 28871362 lepA PSPTO_4220 - GTP-binding protein LepA 4121 59.72 0 4754310..4755749 - 479 28871363 - PSPTO_4221 - serine protease, MucD 4122 55.17 0 4756035..4756991 - 318 28871364 mucB PSPTO_4222 - sigma factor algU regulatory protein MucB 4123 58.88 0 4757000..4757590 - 196 28871365 mucA PSPTO_4223 - sigma factor algU negative regulatory protein MucA 4124 53.95 -1 4757624..4758205 - 193 28871366 rpoE PSPTO_4224 - RNA polymerase sigma factor AlgU 4125 60.85 0 4758704..4760320 + 538 28871367 nadB PSPTO_4225 - L-aspartate oxidase 4126 60.86 0 4760289..4760753 - 154 28871368 - PSPTO_4226 - hypothetical protein 4127 57.65 0 4760737..4760991 - 84 28871369 - PSPTO_4227 - hypothetical protein 4128 59.81 0 4761138..4762085 + 315 28871370 - PSPTO_4228 - hypothetical protein 4129 56.69 0 4762199..4763020 + 273 28871371 - PSPTO_4229 - hypothetical protein 4130 63.05 +1 4763026..4764408 - 460 28871372 - PSPTO_4230 - sensor histidine kinase TctE 4131 60.86 0 4764401..4765072 - 223 28871373 tctD PSPTO_4231 - DNA-binding response regulator TctD 4132 61.45 0 4765571..4766548 + 325 28871374 - PSPTO_4232 - TctC protein, putative 4133 60.13 0 4766611..4767069 + 152 28871375 - PSPTO_4233 - membrane protein TctB, putative 4134 60.86 0 4767071..4768585 + 504 28871376 - PSPTO_4234 - membrane protein TctA, putative 4135 63.57 +1 4768578..4769612 + 344 28871377 - PSPTO_4235 - hypothetical protein 4136 59.31 0 4769631..4770323 - 230 28871378 ung PSPTO_4236 - uracil-DNA glycosylase 4137 60.78 0 4770504..4770962 - 152 28871379 - PSPTO_4237 - putative lipoprotein 4138 58.15 0 4771535..4772602 + 355 28871380 - PSPTO_4238 - ABC transporter, periplasmic substrate-binding protein 4139 62.87 +1 4772630..4773445 + 271 28871381 - PSPTO_4239 - ABC transporter, permease protein 4140 63.47 +1 4773442..4774224 + 260 28871382 - PSPTO_4240 - ABC transporter, ATP-binding protein 4141 61.43 0 4774221..4774946 + 241 28871383 - PSPTO_4241 - hypothetical protein 4142 59.22 0 4774958..4775575 + 205 28871384 - PSPTO_4242 - hypothetical protein 4143 63.08 +1 4775685..4779365 + 1226 28871385 - PSPTO_4243 - urea amidolyase-related protein 4144 64.08 +1 4779401..4781215 + 604 28871386 - PSPTO_4244 - amidase 4145 60.22 0 4781326..4784661 + 1111 28871387 - PSPTO_4245 - hypothetical protein 4146 61.04 0 4784654..4784902 + 82 28871388 - PSPTO_4246 - hypothetical protein 4147 58.44 0 4784962..4785654 + 230 162533084 rsuA PSPTO_4247 - ribosomal small subunit pseudouridine synthase A 4148 58.08 0 4785951..4786835 + 294 28871389 phaG-2 PSPTO_4248 - 3-hydroxyacyl-CoA-acyl carrier protein transferase 4149 53.12 -1 4788681..4789817 + 378 28871390 - PSPTO_4250 - DNA-binding protein 4150 56.31 0 4790778..4792331 - 517 28871391 - PSPTO_4251 - ISPsy5, transposase 4151 48.33 -2 4792349..4792708 - 119 28871392 - PSPTO_4252 - ISPsy5, Orf1 4152 54.19 -1 4793542..4794519 - 325 28871393 - PSPTO_4253 - ISPssy, transposase 4153 54.60 0 4794539..4795939 + 466 28871394 gor-2 PSPTO_4254 - glutathione reductase 4154 55.86 0 4796392..4796724 + 110 28871395 - PSPTO_4255 - carboxymuconolactone decarboxylase family protein 4155 55.28 0 4796769..4797875 + 368 28871396 - PSPTO_4256 - NADH:flavin oxidoreductase/NADH oxidase family protein 4156 49.77 -2 4797904..4798122 + 72 28871397 - PSPTO_4257 - 4-oxalocrotonate tautomerase family protein 4157 48.28 -2 4798233..4798754 + 173 28871398 - PSPTO_4258 - glutathione-regulated potassium-efflux system ancillary protein KefF 4158 54.06 -1 4798755..4800578 + 607 28871399 kefC PSPTO_4259 - glutathione-regulated potassium-efflux system protein KefC 4159 48.79 -2 4800613..4800942 - 109 28871400 trxA PSPTO_4260 - thioredoxin 4160 50.36 -1 4801007..4801705 - 232 28871401 - PSPTO_4261 - isomerase, putative 4161 52.45 -1 4801709..4802299 - 196 28871402 - PSPTO_4262 - TetR family transcriptional regulator 4162 54.26 -1 4802393..4803166 - 257 28871403 - PSPTO_4263 - short chain dehydrogenase/reductase family oxidoreductase 4163 55.32 0 4803256..4803810 - 184 28871404 - PSPTO_4264 - hypothetical protein 4164 51.71 -1 4804230..4805399 + 389 28871405 metC-2 PSPTO_4265 - cystathionine beta-lyase 4165 50.11 -2 4805477..4806364 + 295 28871406 - PSPTO_4266 - hypothetical protein 4166 49.65 -2 4806458..4807027 - 189 28871407 - PSPTO_4267 - TetR family transcriptional regulator 4167 59.24 0 4807947..4808969 + 340 28871408 - PSPTO_4269 - ISPsy4, transposase 4168 57.78 0 4808966..4809775 + 269 28871409 - PSPTO_4270 - transposase/IS protein 4169 47.81 -2 4811663..4813147 - 494 28871410 - PSPTO_4272 - hypothetical protein 4170 59.13 0 4814851..4815513 - 220 28871411 - PSPTO_4274 - TetR family transcriptional regulator 4171 59.41 0 4815638..4816423 + 261 28871412 - PSPTO_4275 - short chain dehydrogenase/reductase family oxidoreductase 4172 55.95 0 4817118..4818041 - 307 28871413 - PSPTO_4276 - LysR family transcriptional regulator 4173 57.19 0 4818257..4819090 + 277 28871414 - PSPTO_4277 - esterase/lipase/thioesterase family protein 4174 54.22 -1 4819268..4820440 + 390 28871415 - PSPTO_4278 - major facilitator family transporter 4175 56.80 0 4820633..4820926 + 97 28871416 - PSPTO_4279 - hypothetical protein 4176 59.84 0 4820934..4821812 + 292 28871417 - PSPTO_4280 - nickel/cobalt efflux protein RcnA 4177 58.05 0 4821822..4822262 + 146 28871418 - PSPTO_4281 - hypothetical protein 4178 53.90 -1 4822314..4822454 + 46 28871419 - PSPTO_4282 - hypothetical protein 4179 59.44 0 4822443..4823687 - 414 28871420 pnlA PSPTO_4283 - pectin lyase 4180 59.73 0 4823844..4824290 - 148 28871421 - PSPTO_4284 - acetyltransferase 4181 59.79 0 4824315..4825463 - 382 28871422 adhB PSPTO_4285 - alcohol dehydrogenase II 4182 57.00 0 4825598..4826818 - 406 28871423 - PSPTO_4286 - hypothetical protein 4183 49.92 -2 4827116..4828339 + 407 158146059 - PSPTO_5625 - binary cytotoxin component, putative 4184 51.93 -1 4828342..4829352 + 336 28871424 - PSPTO_4287 - binary cytotoxin component, putative 4185 58.90 0 4829410..4830027 - 205 28871425 - PSPTO_4288 - hypothetical protein 4186 62.14 0 4830062..4830679 - 205 28871426 - PSPTO_4289 - hypothetical protein 4187 58.92 0 4831075..4833372 + 765 28871427 bglX PSPTO_4290 - beta-glucosidase 4188 62.23 0 4833443..4835200 + 585 28871428 - PSPTO_4291 - sensor histidine kinase 4189 62.70 0 4835207..4836541 + 444 28871429 - PSPTO_4292 - sigma-54 dependent transcriptional regulator/response regulator 4190 60.16 0 4836767..4839148 + 793 28871430 - PSPTO_4293 - sensory box histidine kinase/response regulator 4191 59.65 0 4839316..4841010 + 564 28871431 hscC PSPTO_4294 - chaperone protein HscC 4192 55.70 0 4841016..4842656 + 546 28871432 - PSPTO_4295 - DnaJ domain-containing protein 4193 58.97 0 4842839..4844164 + 441 28871433 - PSPTO_4296 - metabolite-proton symporter, putative 4194 59.78 0 4844667..4845029 + 120 28871434 - PSPTO_4297 - hypothetical protein 4195 59.78 0 4845168..4845791 + 207 28871435 - PSPTO_4298 - hypothetical protein 4196 62.92 +1 4845792..4846031 - 79 28871436 - PSPTO_4299 - hypothetical protein 4197 61.52 0 4846462..4847976 + 504 28871437 - PSPTO_4300 - EmrB/QacA family drug resistance transporter 4198 58.02 0 4847990..4849123 - 377 28871438 - PSPTO_4301 - hypothetical protein 4199 56.55 0 4849586..4850257 - 223 28871439 - PSPTO_4302 - TetR family transcriptional regulator 4200 60.12 0 4850512..4851672 + 386 28871440 - PSPTO_4303 - RND family efflux transporter MFP subunit 4201 59.30 0 4851676..4854810 + 1044 28871441 - PSPTO_4304 - AcrB/AcrD/AcrF family protein 4202 62.22 0 4854807..4856267 + 486 28871442 - PSPTO_4305 - outer membrane efflux protein 4203 58.68 0 4856343..4857644 - 433 28871443 pcaT PSPTO_4306 - dicarboxylic acid transport protein 4204 65.08 +1 4857791..4858990 - 399 28871444 catF PSPTO_4307 - beta-ketoadipyl CoA thiolase 4205 62.31 0 4858990..4859769 - 259 28871445 catJ PSPTO_4308 - 3-oxoadipate:succinyl-CoA transferase, subunit B 4206 59.32 0 4859769..4860626 - 285 28871446 catI PSPTO_4309 - 3-oxoadipate:succinyl-CoA transferase, subunit A 4207 59.19 0 4860784..4861626 - 280 28871447 pcaR PSPTO_4310 - Pca regulon regulatory protein PcaR 4208 53.33 -1 4862471..4862695 - 74 28871448 - PSPTO_4311 - hypothetical protein 4209 59.67 0 4862886..4864358 + 490 28871449 - PSPTO_4312 - phosphate transporter family protein 4210 60.48 0 4864414..4864623 - 69 28871450 - PSPTO_4313 - hypothetical protein 4211 57.98 0 4864702..4865553 - 283 28871451 purU-3 PSPTO_4314 - formyltetrahydrofolate deformylase 4212 53.28 -1 4865912..4866292 + 126 28871452 - PSPTO_4315 - transcriptional regulator, putative 4213 56.46 0 4866365..4867795 - 476 28871453 sbcB PSPTO_4316 - exonuclease I 4214 61.86 0 4868002..4868709 + 235 28871454 - PSPTO_4317 - hypothetical protein 4215 61.57 0 4868706..4869686 + 326 28871455 - PSPTO_4318 - integral membrane protein 4216 60.51 0 4869673..4871265 + 530 28871456 - PSPTO_4319 - hypothetical protein 58.61 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0