version 1.0
Pseudomonas syringae pv. tomato str. DC3000, complete genome - 1..6397126 5475 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 4083 60.28 0 4713249..4713530 - 93 28871325 rpmE-1 PSPTO_4183 - 50S ribosomal protein L31 type B 4084 60.70 0 4713603..4713803 + 66 28871326 - PSPTO_4184 - hypothetical protein 4085 59.86 0 4713825..4714955 + 376 28871327 - PSPTO_4185 - hypothetical protein 4086 43.47 -2 4715051..4715731 + 226 28871328 - PSPTO_4186 - hypothetical protein 4087 47.71 -2 4716078..4716731 - 217 28871329 - PSPTO_4187 - hypothetical protein 4088 49.02 -2 4716949..4717662 + 237 28871330 - PSPTO_4188 - hypothetical protein 4089 43.33 -2 4717841..4718530 + 229 28871331 - PSPTO_4189 - hypothetical protein 4090 49.43 -2 4718581..4719450 - 289 28871332 - PSPTO_4190 - hypothetical protein 4091 61.60 0 4719830..4722967 + 1045 28871333 - PSPTO_4191 - hypothetical protein 4092 60.33 0 4723046..4723645 + 199 28871334 - PSPTO_4192 - hypothetical protein 4093 59.90 0 4723642..4724409 + 255 28871335 - PSPTO_4193 - iron utilization protein, putative 4094 58.03 0 4724431..4725090 - 219 28871336 - PSPTO_4194 - hypothetical protein 4095 57.18 0 4725161..4725529 - 122 28871337 - PSPTO_4195 - hypothetical protein 4096 62.25 0 4726006..4728249 + 747 28871338 gcd PSPTO_4196 - glucose dehydrogenase 4097 62.49 0 4729025..4730221 - 398 28871339 - PSPTO_4197 - hypothetical protein 4098 63.00 +1 4730218..4731225 - 335 28871340 - PSPTO_4198 - cobalamin synthesis protein/P47K family protein 4099 63.33 +1 4731222..4731521 - 99 28871341 - PSPTO_4199 - hypothetical protein 4100 63.73 +1 4731544..4732293 - 249 28871342 - PSPTO_4200 - short chain dehydrogenase/reductase family oxidoreductase 4101 65.62 +1 4732325..4733086 - 253 28871343 - PSPTO_4201 - short chain dehydrogenase/reductase family oxidoreductase 4102 61.00 0 4733097..4734437 - 446 28871344 - PSPTO_4202 - major facilitator family transporter 4103 58.62 0 4734465..4735346 - 293 28871345 - PSPTO_4203 - polysaccharide deacetylase family protein 4104 65.99 +1 4735471..4736799 - 442 28871346 - PSPTO_4204 - hypothetical protein 4105 59.68 0 4737182..4738183 + 333 28871347 - PSPTO_4205 - GntR family transcriptional regulator 4106 59.10 0 4738525..4738947 - 140 28871348 - PSPTO_4206 - hypothetical protein 4107 61.42 0 4738947..4739822 - 291 28871349 - PSPTO_4207 - hypothetical protein 4108 59.49 0 4739826..4742180 - 784 28871350 - PSPTO_4208 - HAMP domain/GGDEF domain/EAL domain-containing protein 4109 58.78 0 4742177..4742848 - 223 28871351 - PSPTO_4209 - hypothetical protein 4110 60.01 0 4743030..4745447 + 805 28871352 lon-2 PSPTO_4210 - ATP-dependent protease La 4111 63.61 +1 4745655..4746047 + 130 28871353 - PSPTO_4211 - putative lipoprotein 4112 59.41 0 4746148..4746891 + 247 28871354 - PSPTO_4212 - methyltransferase, putative 4113 60.21 0 4746888..4747847 + 319 28871355 - PSPTO_4213 - methyltransferase, putative 4114 62.62 0 4747856..4748596 - 246 28871356 pdxJ PSPTO_4214 - pyridoxal phosphate biosynthetic protein PdxJ 4115 63.89 +1 4748659..4749342 - 227 28871357 recO PSPTO_4215 - DNA repair protein RecO 4116 57.81 0 4749403..4750305 - 300 28871358 era PSPTO_4216 - GTP-binding protein Era 4117 61.88 0 4750298..4750987 - 229 28871359 rnc PSPTO_4217 - ribonuclease III 4118 47.09 -2 4750984..4751361 - 125 28871360 - PSPTO_4218 - hypothetical protein 4119 56.73 0 4751478..4752332 - 284 28871361 lepB PSPTO_4219 - signal peptidase I 4120 58.05 0 4752342..4754129 - 595 28871362 lepA PSPTO_4220 - GTP-binding protein LepA 4121 59.72 0 4754310..4755749 - 479 28871363 - PSPTO_4221 - serine protease, MucD 4122 55.17 0 4756035..4756991 - 318 28871364 mucB PSPTO_4222 - sigma factor algU regulatory protein MucB 4123 58.88 0 4757000..4757590 - 196 28871365 mucA PSPTO_4223 - sigma factor algU negative regulatory protein MucA 4124 53.95 -1 4757624..4758205 - 193 28871366 rpoE PSPTO_4224 - RNA polymerase sigma factor AlgU 4125 60.85 0 4758704..4760320 + 538 28871367 nadB PSPTO_4225 - L-aspartate oxidase 4126 60.86 0 4760289..4760753 - 154 28871368 - PSPTO_4226 - hypothetical protein 4127 57.65 0 4760737..4760991 - 84 28871369 - PSPTO_4227 - hypothetical protein 4128 59.81 0 4761138..4762085 + 315 28871370 - PSPTO_4228 - hypothetical protein 4129 56.69 0 4762199..4763020 + 273 28871371 - PSPTO_4229 - hypothetical protein 4130 63.05 +1 4763026..4764408 - 460 28871372 - PSPTO_4230 - sensor histidine kinase TctE 4131 60.86 0 4764401..4765072 - 223 28871373 tctD PSPTO_4231 - DNA-binding response regulator TctD 4132 61.45 0 4765571..4766548 + 325 28871374 - PSPTO_4232 - TctC protein, putative 4133 60.13 0 4766611..4767069 + 152 28871375 - PSPTO_4233 - membrane protein TctB, putative 4134 60.86 0 4767071..4768585 + 504 28871376 - PSPTO_4234 - membrane protein TctA, putative 4135 63.57 +1 4768578..4769612 + 344 28871377 - PSPTO_4235 - hypothetical protein 4136 59.31 0 4769631..4770323 - 230 28871378 ung PSPTO_4236 - uracil-DNA glycosylase 4137 60.78 0 4770504..4770962 - 152 28871379 - PSPTO_4237 - putative lipoprotein 4138 58.15 0 4771535..4772602 + 355 28871380 - PSPTO_4238 - ABC transporter, periplasmic substrate-binding protein 4139 62.87 +1 4772630..4773445 + 271 28871381 - PSPTO_4239 - ABC transporter, permease protein 4140 63.47 +1 4773442..4774224 + 260 28871382 - PSPTO_4240 - ABC transporter, ATP-binding protein 4141 61.43 0 4774221..4774946 + 241 28871383 - PSPTO_4241 - hypothetical protein 4142 59.22 0 4774958..4775575 + 205 28871384 - PSPTO_4242 - hypothetical protein 4143 63.08 +1 4775685..4779365 + 1226 28871385 - PSPTO_4243 - urea amidolyase-related protein 4144 64.08 +1 4779401..4781215 + 604 28871386 - PSPTO_4244 - amidase 4145 60.22 0 4781326..4784661 + 1111 28871387 - PSPTO_4245 - hypothetical protein 4146 61.04 0 4784654..4784902 + 82 28871388 - PSPTO_4246 - hypothetical protein 4147 58.44 0 4784962..4785654 + 230 162533084 rsuA PSPTO_4247 - ribosomal small subunit pseudouridine synthase A 4148 58.08 0 4785951..4786835 + 294 28871389 phaG-2 PSPTO_4248 - 3-hydroxyacyl-CoA-acyl carrier protein transferase 4149 53.12 -1 4788681..4789817 + 378 28871390 - PSPTO_4250 - DNA-binding protein 4150 56.31 0 4790778..4792331 - 517 28871391 - PSPTO_4251 - ISPsy5, transposase 4151 48.33 -2 4792349..4792708 - 119 28871392 - PSPTO_4252 - ISPsy5, Orf1 4152 54.19 -1 4793542..4794519 - 325 28871393 - PSPTO_4253 - ISPssy, transposase 4153 54.60 0 4794539..4795939 + 466 28871394 gor-2 PSPTO_4254 - glutathione reductase 4154 55.86 0 4796392..4796724 + 110 28871395 - PSPTO_4255 - carboxymuconolactone decarboxylase family protein 4155 55.28 0 4796769..4797875 + 368 28871396 - PSPTO_4256 - NADH:flavin oxidoreductase/NADH oxidase family protein 4156 49.77 -2 4797904..4798122 + 72 28871397 - PSPTO_4257 - 4-oxalocrotonate tautomerase family protein 4157 48.28 -2 4798233..4798754 + 173 28871398 - PSPTO_4258 - glutathione-regulated potassium-efflux system ancillary protein KefF 4158 54.06 -1 4798755..4800578 + 607 28871399 kefC PSPTO_4259 - glutathione-regulated potassium-efflux system protein KefC 4159 48.79 -2 4800613..4800942 - 109 28871400 trxA PSPTO_4260 - thioredoxin 4160 50.36 -1 4801007..4801705 - 232 28871401 - PSPTO_4261 - isomerase, putative 4161 52.45 -1 4801709..4802299 - 196 28871402 - PSPTO_4262 - TetR family transcriptional regulator 4162 54.26 -1 4802393..4803166 - 257 28871403 - PSPTO_4263 - short chain dehydrogenase/reductase family oxidoreductase 4163 55.32 0 4803256..4803810 - 184 28871404 - PSPTO_4264 - hypothetical protein 4164 51.71 -1 4804230..4805399 + 389 28871405 metC-2 PSPTO_4265 - cystathionine beta-lyase 4165 50.11 -2 4805477..4806364 + 295 28871406 - PSPTO_4266 - hypothetical protein 4166 49.65 -2 4806458..4807027 - 189 28871407 - PSPTO_4267 - TetR family transcriptional regulator 4167 59.24 0 4807947..4808969 + 340 28871408 - PSPTO_4269 - ISPsy4, transposase 4168 57.78 0 4808966..4809775 + 269 28871409 - PSPTO_4270 - transposase/IS protein 4169 47.81 -2 4811663..4813147 - 494 28871410 - PSPTO_4272 - hypothetical protein 4170 59.13 0 4814851..4815513 - 220 28871411 - PSPTO_4274 - TetR family transcriptional regulator 4171 59.41 0 4815638..4816423 + 261 28871412 - PSPTO_4275 - short chain dehydrogenase/reductase family oxidoreductase 4172 55.95 0 4817118..4818041 - 307 28871413 - PSPTO_4276 - LysR family transcriptional regulator 4173 57.19 0 4818257..4819090 + 277 28871414 - PSPTO_4277 - esterase/lipase/thioesterase family protein 4174 54.22 -1 4819268..4820440 + 390 28871415 - PSPTO_4278 - major facilitator family transporter 4175 56.80 0 4820633..4820926 + 97 28871416 - PSPTO_4279 - hypothetical protein 4176 59.84 0 4820934..4821812 + 292 28871417 - PSPTO_4280 - nickel/cobalt efflux protein RcnA 4177 58.05 0 4821822..4822262 + 146 28871418 - PSPTO_4281 - hypothetical protein 4178 53.90 -1 4822314..4822454 + 46 28871419 - PSPTO_4282 - hypothetical protein 4179 59.44 0 4822443..4823687 - 414 28871420 pnlA PSPTO_4283 - pectin lyase 4180 59.73 0 4823844..4824290 - 148 28871421 - PSPTO_4284 - acetyltransferase 4181 59.79 0 4824315..4825463 - 382 28871422 adhB PSPTO_4285 - alcohol dehydrogenase II 4182 57.00 0 4825598..4826818 - 406 28871423 - PSPTO_4286 - hypothetical protein 58.61 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0