version 1.0
Pseudomonas syringae pv. tomato str. DC3000, complete genome - 1..6397126 5475 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 4042 62.25 0 4670324..4670980 + 218 28871284 - PSPTO_4142 - hypothetical protein 4043 56.62 0 4671062..4671280 - 72 28871285 - PSPTO_4143 - hypothetical protein 4044 57.50 0 4671393..4671959 - 188 28871286 - PSPTO_4144 - deoxycytidine triphosphate deaminase 4045 47.62 -2 4672279..4672488 + 69 28871287 capB PSPTO_4145 - cold shock protein CapB 4046 59.73 0 4672629..4673723 - 364 28871288 - PSPTO_4146 - ParA family protein 4047 59.49 0 4673910..4675958 + 682 28871289 metG PSPTO_4147 - methionyl-tRNA synthetase 4048 61.64 0 4676089..4676964 + 291 28871290 - PSPTO_4148 - iron-sulfur cluster-binding protein 4049 55.56 0 4676961..4677599 + 212 28871291 nth PSPTO_4149 - endonuclease III 4050 56.20 0 4677643..4678005 - 120 28871292 - PSPTO_4150 - hypothetical protein 4051 53.75 -1 4677998..4678624 - 208 28871293 - PSPTO_4151 - LuxR family DNA-binding response regulator 4052 54.19 -1 4679391..4680368 + 325 28871294 - PSPTO_4152 - ISPssy, transposase 4053 57.14 0 4681237..4681635 + 132 28871295 - PSPTO_4153 - hypothetical protein 4054 50.36 -1 4681977..4682252 + 91 28871296 - PSPTO_4154 - hypothetical protein 4055 57.55 0 4682334..4683551 - 405 28871297 argG PSPTO_4155 - argininosuccinate synthase 4056 62.14 0 4683672..4684577 - 301 28871298 - PSPTO_4156 - sodium-type flagellar protein MotY, putative 4057 61.88 0 4684726..4685769 + 347 28871299 - PSPTO_4157 - dihydroorotase 4058 62.68 0 4685766..4686443 + 225 28871300 rnt PSPTO_4158 - ribonuclease T 4059 52.97 -1 4686627..4686845 + 72 28871301 - PSPTO_4159 - bacterioferritin-associated ferredoxin 4060 53.50 -1 4687046..4687516 + 156 28871302 bfr PSPTO_4160 - bacterioferritin 4061 55.96 0 4687604..4687930 - 108 28871303 - PSPTO_4161 - glutaredoxin-related protein 4062 60.94 0 4688019..4690217 - 732 28871304 - PSPTO_4162 - oxidoreductase, molybdopterin-binding 4063 58.16 0 4690272..4690565 - 97 28871305 - PSPTO_4163 - hypothetical protein 4064 58.41 0 4691015..4691935 + 306 28871306 argF PSPTO_4164 - ornithine carbamoyltransferase 4065 61.39 0 4691941..4693002 + 353 28871307 - PSPTO_4165 - ABC transporter, ATP-binding protein 4066 59.02 0 4693011..4693481 - 156 28871308 - PSPTO_4166 - ybaK/ebsC protein 4067 56.99 0 4693833..4694690 + 285 28871309 glpF PSPTO_4167 - glycerol uptake facilitator protein 4068 61.02 0 4694720..4696225 + 501 28871310 glpK PSPTO_4168 - glycerol kinase 4069 58.07 0 4696336..4697091 + 251 28871311 glpR PSPTO_4169 - glycerol-3-phosphate regulon repressor 4070 60.17 0 4697683..4699221 + 512 28871312 glpD PSPTO_4170 - glycerol-3-phosphate dehydrogenase 4071 56.42 0 4699577..4700503 + 308 28871313 - PSPTO_4171 - amino acid ABC transporter, periplasmic amino acid-binding protein 4072 57.43 0 4700634..4701380 + 248 28871314 - PSPTO_4172 - amino acid ABC transporter, permease protein 4073 58.41 0 4701380..4702045 + 221 28871315 - PSPTO_4173 - amino acid ABC transporter, permease protein 4074 57.96 0 4702042..4702776 + 244 28871316 - PSPTO_4174 - amino acid ABC transporter, ATP-binding protein 4075 62.73 0 4702835..4704766 + 643 28871317 - PSPTO_4175 - sensor histidine kinase 4076 60.80 0 4704777..4706105 + 442 28871318 - PSPTO_4176 - sigma-54 dependent transcriptional regulator/response regulator 4077 58.49 0 4706341..4706988 - 215 28871319 - PSPTO_4177 - 2-hydroxychromene-2-carboxylate isomerase family protein 4078 61.33 0 4707042..4708034 - 330 28871320 - PSPTO_4178 - alpha/beta fold family hydrolase 4079 59.45 0 4708220..4710520 - 766 28871321 metE PSPTO_4179 - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 4080 62.42 0 4710627..4711544 + 305 28871322 metR PSPTO_4180 - transcriptional activator MetR 4081 62.53 0 4711599..4712009 - 136 28871323 - PSPTO_4181 - mutT/nudix family protein 4082 59.62 0 4712006..4713097 - 363 28871324 - PSPTO_4182 - D-alanyl-alanine synthetase A 4083 60.28 0 4713249..4713530 - 93 28871325 rpmE-1 PSPTO_4183 - 50S ribosomal protein L31 type B 4084 60.70 0 4713603..4713803 + 66 28871326 - PSPTO_4184 - hypothetical protein 4085 59.86 0 4713825..4714955 + 376 28871327 - PSPTO_4185 - hypothetical protein 4086 43.47 -2 4715051..4715731 + 226 28871328 - PSPTO_4186 - hypothetical protein 4087 47.71 -2 4716078..4716731 - 217 28871329 - PSPTO_4187 - hypothetical protein 4088 49.02 -2 4716949..4717662 + 237 28871330 - PSPTO_4188 - hypothetical protein 4089 43.33 -2 4717841..4718530 + 229 28871331 - PSPTO_4189 - hypothetical protein 4090 49.43 -2 4718581..4719450 - 289 28871332 - PSPTO_4190 - hypothetical protein 4091 61.60 0 4719830..4722967 + 1045 28871333 - PSPTO_4191 - hypothetical protein 4092 60.33 0 4723046..4723645 + 199 28871334 - PSPTO_4192 - hypothetical protein 4093 59.90 0 4723642..4724409 + 255 28871335 - PSPTO_4193 - iron utilization protein, putative 4094 58.03 0 4724431..4725090 - 219 28871336 - PSPTO_4194 - hypothetical protein 4095 57.18 0 4725161..4725529 - 122 28871337 - PSPTO_4195 - hypothetical protein 4096 62.25 0 4726006..4728249 + 747 28871338 gcd PSPTO_4196 - glucose dehydrogenase 4097 62.49 0 4729025..4730221 - 398 28871339 - PSPTO_4197 - hypothetical protein 4098 63.00 +1 4730218..4731225 - 335 28871340 - PSPTO_4198 - cobalamin synthesis protein/P47K family protein 4099 63.33 +1 4731222..4731521 - 99 28871341 - PSPTO_4199 - hypothetical protein 4100 63.73 +1 4731544..4732293 - 249 28871342 - PSPTO_4200 - short chain dehydrogenase/reductase family oxidoreductase 4101 65.62 +1 4732325..4733086 - 253 28871343 - PSPTO_4201 - short chain dehydrogenase/reductase family oxidoreductase 4102 61.00 0 4733097..4734437 - 446 28871344 - PSPTO_4202 - major facilitator family transporter 4103 58.62 0 4734465..4735346 - 293 28871345 - PSPTO_4203 - polysaccharide deacetylase family protein 4104 65.99 +1 4735471..4736799 - 442 28871346 - PSPTO_4204 - hypothetical protein 4105 59.68 0 4737182..4738183 + 333 28871347 - PSPTO_4205 - GntR family transcriptional regulator 4106 59.10 0 4738525..4738947 - 140 28871348 - PSPTO_4206 - hypothetical protein 4107 61.42 0 4738947..4739822 - 291 28871349 - PSPTO_4207 - hypothetical protein 4108 59.49 0 4739826..4742180 - 784 28871350 - PSPTO_4208 - HAMP domain/GGDEF domain/EAL domain-containing protein 4109 58.78 0 4742177..4742848 - 223 28871351 - PSPTO_4209 - hypothetical protein 4110 60.01 0 4743030..4745447 + 805 28871352 lon-2 PSPTO_4210 - ATP-dependent protease La 4111 63.61 +1 4745655..4746047 + 130 28871353 - PSPTO_4211 - putative lipoprotein 4112 59.41 0 4746148..4746891 + 247 28871354 - PSPTO_4212 - methyltransferase, putative 4113 60.21 0 4746888..4747847 + 319 28871355 - PSPTO_4213 - methyltransferase, putative 4114 62.62 0 4747856..4748596 - 246 28871356 pdxJ PSPTO_4214 - pyridoxal phosphate biosynthetic protein PdxJ 4115 63.89 +1 4748659..4749342 - 227 28871357 recO PSPTO_4215 - DNA repair protein RecO 4116 57.81 0 4749403..4750305 - 300 28871358 era PSPTO_4216 - GTP-binding protein Era 4117 61.88 0 4750298..4750987 - 229 28871359 rnc PSPTO_4217 - ribonuclease III 4118 47.09 -2 4750984..4751361 - 125 28871360 - PSPTO_4218 - hypothetical protein 4119 56.73 0 4751478..4752332 - 284 28871361 lepB PSPTO_4219 - signal peptidase I 4120 58.05 0 4752342..4754129 - 595 28871362 lepA PSPTO_4220 - GTP-binding protein LepA 4121 59.72 0 4754310..4755749 - 479 28871363 - PSPTO_4221 - serine protease, MucD 4122 55.17 0 4756035..4756991 - 318 28871364 mucB PSPTO_4222 - sigma factor algU regulatory protein MucB 4123 58.88 0 4757000..4757590 - 196 28871365 mucA PSPTO_4223 - sigma factor algU negative regulatory protein MucA 4124 53.95 -1 4757624..4758205 - 193 28871366 rpoE PSPTO_4224 - RNA polymerase sigma factor AlgU 4125 60.85 0 4758704..4760320 + 538 28871367 nadB PSPTO_4225 - L-aspartate oxidase 4126 60.86 0 4760289..4760753 - 154 28871368 - PSPTO_4226 - hypothetical protein 4127 57.65 0 4760737..4760991 - 84 28871369 - PSPTO_4227 - hypothetical protein 4128 59.81 0 4761138..4762085 + 315 28871370 - PSPTO_4228 - hypothetical protein 4129 56.69 0 4762199..4763020 + 273 28871371 - PSPTO_4229 - hypothetical protein 4130 63.05 +1 4763026..4764408 - 460 28871372 - PSPTO_4230 - sensor histidine kinase TctE 4131 60.86 0 4764401..4765072 - 223 28871373 tctD PSPTO_4231 - DNA-binding response regulator TctD 4132 61.45 0 4765571..4766548 + 325 28871374 - PSPTO_4232 - TctC protein, putative 4133 60.13 0 4766611..4767069 + 152 28871375 - PSPTO_4233 - membrane protein TctB, putative 4134 60.86 0 4767071..4768585 + 504 28871376 - PSPTO_4234 - membrane protein TctA, putative 4135 63.57 +1 4768578..4769612 + 344 28871377 - PSPTO_4235 - hypothetical protein 4136 59.31 0 4769631..4770323 - 230 28871378 ung PSPTO_4236 - uracil-DNA glycosylase 4137 60.78 0 4770504..4770962 - 152 28871379 - PSPTO_4237 - putative lipoprotein 4138 58.15 0 4771535..4772602 + 355 28871380 - PSPTO_4238 - ABC transporter, periplasmic substrate-binding protein 4139 62.87 +1 4772630..4773445 + 271 28871381 - PSPTO_4239 - ABC transporter, permease protein 4140 63.47 +1 4773442..4774224 + 260 28871382 - PSPTO_4240 - ABC transporter, ATP-binding protein 4141 61.43 0 4774221..4774946 + 241 28871383 - PSPTO_4241 - hypothetical protein 58.61 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0