version 1.0
Pseudomonas syringae pv. tomato str. DC3000, complete genome - 1..6397126 5475 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3988 53.33 -1 4599541..4599825 - 94 28871230 - PSPTO_4087 - hypothetical protein 3989 61.72 0 4600859..4601647 + 262 28871231 - PSPTO_4089 - alpha/beta fold family hydrolase 3990 56.56 0 4601797..4602360 + 187 28871232 ppiA PSPTO_4090 - peptidyl-prolyl cis-trans isomerase A 3991 58.54 0 4602462..4604294 + 610 28871233 - PSPTO_4091 - ABC transporter, ATP-binding/permease protein 3992 60.11 0 4604386..4605513 - 375 28871234 - PSPTO_4092 - hypothetical protein 3993 56.47 0 4605553..4610457 - 1634 28871235 - PSPTO_4093 - leucine-rich repeat-containing protein 3994 59.27 0 4610578..4611699 - 373 28871236 - PSPTO_4094 - 3-oxoacyl-(acyl carrier protein) synthase III 3995 61.86 0 4611940..4615851 - 1303 28871237 hrpA PSPTO_4095 - ATP-dependent helicase HrpA 3996 56.03 0 4616010..4616150 + 46 28871238 - PSPTO_4096 - hypothetical protein 3997 57.68 0 4616449..4618140 - 563 28871239 fadD-1 PSPTO_4097 - acyl-CoA synthetase 3998 58.79 0 4618496..4620184 - 562 28871240 fadD-2 PSPTO_4098 - acyl-CoA synthetase 3999 57.33 0 4620249..4620398 - 49 28871241 - PSPTO_4099 - hypothetical protein 4000 57.66 0 4620529..4621050 + 173 28871242 - PSPTO_4100 - MaoC-like domain-containing protein 4001 56.65 0 4621223..4622890 + 555 28871243 hopAK1 PSPTO_4101 - type III effector HopAK1 4002 54.04 -1 4623165..4623362 + 65 28871244 - PSPTO_4102 - hypothetical protein 4003 56.41 0 4623412..4623762 - 116 28871245 - PSPTO_4103 - hypothetical protein 4004 61.85 0 4623994..4626840 + 948 28871246 - PSPTO_4104 - ATP-dependent helicase HepA 4005 60.49 0 4626944..4628383 - 479 28871247 - PSPTO_4105 - major facilitator family transporter 4006 60.28 0 4628608..4630878 + 756 28871248 - PSPTO_4106 - GGDEF domain/EAL domain-containing protein 4007 57.78 0 4631003..4631317 - 104 28871249 - PSPTO_4107 - hypothetical protein 4008 58.76 0 4631636..4632760 + 374 28871250 - PSPTO_4108 - high-affinity branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein 4009 59.09 0 4632986..4633909 + 307 28871251 - PSPTO_4109 - high-affinity branched-chain amino acid ABC transporter, permease protein 4010 61.30 0 4633906..4635171 + 421 28871252 - PSPTO_4110 - leucine/isoleucine/valine transporter permease subunit 4011 60.81 0 4635168..4635935 + 255 28871253 - PSPTO_4111 - leucine/isoleucine/valine transporter ATP-binding subunit 4012 59.69 0 4635936..4636637 + 233 28871254 - PSPTO_4112 - high-affinity amino acid ABC transporter, ATP-binding protein 4013 60.65 0 4636922..4637602 + 226 28871255 - PSPTO_4113 - putative lipoprotein 4014 62.14 0 4637699..4639312 + 537 28871256 - PSPTO_4114 - hypothetical protein 4015 61.94 0 4639663..4640127 - 154 28871257 - PSPTO_4115 - lipoprotein SlyB, putative 4016 59.26 0 4640275..4640922 - 215 28871258 pdxH PSPTO_4116 - pyridoxamine 5'-phosphate oxidase 4017 64.22 +1 4641196..4642341 - 381 28871259 - PSPTO_4117 - ompA family protein 4018 44.44 -2 4642344..4642460 + 38 28871260 - PSPTO_4118 - hypothetical protein 4019 63.53 +1 4642495..4643643 - 382 28871261 estC PSPTO_4119 - carboxylesterase 4020 62.75 0 4643754..4645898 - 714 28871262 - PSPTO_4120 - ATP-dependent DNA helicase DinG 4021 58.49 0 4646006..4646470 + 154 28871263 - PSPTO_4121 - hypothetical protein 4022 59.23 0 4646738..4647652 + 304 28871264 tsk PSPTO_4122 - nucleoside-specific channel-forming protein 4023 61.92 0 4647679..4648710 + 343 28871265 - PSPTO_4123 - purine nucleoside permease, putative 4024 65.61 +1 4648789..4649547 - 252 28871266 - PSPTO_4124 - hypothetical protein 4025 58.70 0 4649540..4649815 - 91 28871267 - PSPTO_4125 - hypothetical protein 4026 64.06 +1 4650033..4650530 + 165 28871268 - PSPTO_4126 - hypothetical protein 4027 60.13 0 4650534..4651007 + 157 28871269 - PSPTO_4127 - hypothetical protein 4028 59.03 0 4651186..4653621 - 811 28871270 - PSPTO_4128 - TonB-dependent siderophore receptor 4029 62.68 0 4653734..4654285 - 183 28871271 - PSPTO_4129 - hypothetical protein 4030 52.73 -1 4654399..4654893 + 164 28871272 - PSPTO_4130 - hypothetical protein 4031 59.92 0 4655506..4655757 - 83 28871273 - PSPTO_4131 - hypothetical protein 4032 59.02 0 4655885..4656538 - 217 28871274 - PSPTO_4132 - repressor protein c2, putative 4033 61.70 0 4657254..4659728 + 824 28871275 - PSPTO_4133 - penicillin amidase family protein 4034 62.75 0 4660133..4661179 + 348 28871276 - PSPTO_4134 - hypothetical protein 4035 62.82 +1 4661176..4662891 + 571 28871277 - PSPTO_4135 - ATP-dependent DNA ligase 4036 57.34 0 4663235..4664017 + 260 28871278 - PSPTO_4136 - amino acid ABC transporter, periplasmic amino acid-binding protein 4037 58.68 0 4664114..4664827 + 237 28871279 - PSPTO_4137 - amino acid ABC transporter, permease protein 4038 57.95 0 4664824..4665534 + 236 28871280 - PSPTO_4138 - amino acid ABC transporter, permease protein 4039 63.63 +1 4665547..4666665 + 372 28871281 - PSPTO_4139 - hypothetical protein 4040 60.39 0 4666675..4667439 + 254 28871282 - PSPTO_4140 - amino acid ABC transporter, ATP-binding protein 4041 62.84 +1 4667817..4670327 + 836 28871283 - PSPTO_4141 - helicase domain-containing protein 4042 62.25 0 4670324..4670980 + 218 28871284 - PSPTO_4142 - hypothetical protein 4043 56.62 0 4671062..4671280 - 72 28871285 - PSPTO_4143 - hypothetical protein 4044 57.50 0 4671393..4671959 - 188 28871286 - PSPTO_4144 - deoxycytidine triphosphate deaminase 4045 47.62 -2 4672279..4672488 + 69 28871287 capB PSPTO_4145 - cold shock protein CapB 4046 59.73 0 4672629..4673723 - 364 28871288 - PSPTO_4146 - ParA family protein 4047 59.49 0 4673910..4675958 + 682 28871289 metG PSPTO_4147 - methionyl-tRNA synthetase 4048 61.64 0 4676089..4676964 + 291 28871290 - PSPTO_4148 - iron-sulfur cluster-binding protein 4049 55.56 0 4676961..4677599 + 212 28871291 nth PSPTO_4149 - endonuclease III 4050 56.20 0 4677643..4678005 - 120 28871292 - PSPTO_4150 - hypothetical protein 4051 53.75 -1 4677998..4678624 - 208 28871293 - PSPTO_4151 - LuxR family DNA-binding response regulator 4052 54.19 -1 4679391..4680368 + 325 28871294 - PSPTO_4152 - ISPssy, transposase 4053 57.14 0 4681237..4681635 + 132 28871295 - PSPTO_4153 - hypothetical protein 4054 50.36 -1 4681977..4682252 + 91 28871296 - PSPTO_4154 - hypothetical protein 4055 57.55 0 4682334..4683551 - 405 28871297 argG PSPTO_4155 - argininosuccinate synthase 4056 62.14 0 4683672..4684577 - 301 28871298 - PSPTO_4156 - sodium-type flagellar protein MotY, putative 4057 61.88 0 4684726..4685769 + 347 28871299 - PSPTO_4157 - dihydroorotase 4058 62.68 0 4685766..4686443 + 225 28871300 rnt PSPTO_4158 - ribonuclease T 4059 52.97 -1 4686627..4686845 + 72 28871301 - PSPTO_4159 - bacterioferritin-associated ferredoxin 4060 53.50 -1 4687046..4687516 + 156 28871302 bfr PSPTO_4160 - bacterioferritin 4061 55.96 0 4687604..4687930 - 108 28871303 - PSPTO_4161 - glutaredoxin-related protein 4062 60.94 0 4688019..4690217 - 732 28871304 - PSPTO_4162 - oxidoreductase, molybdopterin-binding 4063 58.16 0 4690272..4690565 - 97 28871305 - PSPTO_4163 - hypothetical protein 4064 58.41 0 4691015..4691935 + 306 28871306 argF PSPTO_4164 - ornithine carbamoyltransferase 4065 61.39 0 4691941..4693002 + 353 28871307 - PSPTO_4165 - ABC transporter, ATP-binding protein 4066 59.02 0 4693011..4693481 - 156 28871308 - PSPTO_4166 - ybaK/ebsC protein 4067 56.99 0 4693833..4694690 + 285 28871309 glpF PSPTO_4167 - glycerol uptake facilitator protein 4068 61.02 0 4694720..4696225 + 501 28871310 glpK PSPTO_4168 - glycerol kinase 4069 58.07 0 4696336..4697091 + 251 28871311 glpR PSPTO_4169 - glycerol-3-phosphate regulon repressor 4070 60.17 0 4697683..4699221 + 512 28871312 glpD PSPTO_4170 - glycerol-3-phosphate dehydrogenase 4071 56.42 0 4699577..4700503 + 308 28871313 - PSPTO_4171 - amino acid ABC transporter, periplasmic amino acid-binding protein 4072 57.43 0 4700634..4701380 + 248 28871314 - PSPTO_4172 - amino acid ABC transporter, permease protein 4073 58.41 0 4701380..4702045 + 221 28871315 - PSPTO_4173 - amino acid ABC transporter, permease protein 4074 57.96 0 4702042..4702776 + 244 28871316 - PSPTO_4174 - amino acid ABC transporter, ATP-binding protein 4075 62.73 0 4702835..4704766 + 643 28871317 - PSPTO_4175 - sensor histidine kinase 4076 60.80 0 4704777..4706105 + 442 28871318 - PSPTO_4176 - sigma-54 dependent transcriptional regulator/response regulator 4077 58.49 0 4706341..4706988 - 215 28871319 - PSPTO_4177 - 2-hydroxychromene-2-carboxylate isomerase family protein 4078 61.33 0 4707042..4708034 - 330 28871320 - PSPTO_4178 - alpha/beta fold family hydrolase 4079 59.45 0 4708220..4710520 - 766 28871321 metE PSPTO_4179 - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 4080 62.42 0 4710627..4711544 + 305 28871322 metR PSPTO_4180 - transcriptional activator MetR 4081 62.53 0 4711599..4712009 - 136 28871323 - PSPTO_4181 - mutT/nudix family protein 4082 59.62 0 4712006..4713097 - 363 28871324 - PSPTO_4182 - D-alanyl-alanine synthetase A 4083 60.28 0 4713249..4713530 - 93 28871325 rpmE-1 PSPTO_4183 - 50S ribosomal protein L31 type B 4084 60.70 0 4713603..4713803 + 66 28871326 - PSPTO_4184 - hypothetical protein 4085 59.86 0 4713825..4714955 + 376 28871327 - PSPTO_4185 - hypothetical protein 4086 43.47 -2 4715051..4715731 + 226 28871328 - PSPTO_4186 - hypothetical protein 4087 47.71 -2 4716078..4716731 - 217 28871329 - PSPTO_4187 - hypothetical protein 58.61 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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