version 1.0
Pseudomonas syringae pv. tomato str. DC3000, complete genome - 1..6397126 5475 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3913 53.90 -1 4522782..4523486 + 234 28871153 - PSPTO_4010 - repressor protein cI 3914 56.84 0 4524096..4524380 - 94 28871154 - PSPTO_4011 - hypothetical protein 3915 58.53 0 4524602..4525363 - 253 28871155 - PSPTO_4012 - hypothetical protein 3916 59.24 0 4525463..4526485 + 340 28871156 - PSPTO_4013 - ISPsy4, transposase 3917 57.78 0 4526482..4527291 + 269 28871157 - PSPTO_4014 - transposase/IS protein 3918 55.02 0 4527317..4527565 - 82 28871158 - PSPTO_4015 - hypothetical protein 3919 55.56 0 4527558..4527764 - 68 28871159 - PSPTO_4016 - hypothetical protein 3920 53.70 -1 4527761..4528300 - 179 28871160 - PSPTO_4017 - hypothetical protein 3921 54.88 0 4528754..4530373 - 539 28871161 - PSPTO_4018 - hypothetical protein 3922 60.29 0 4530408..4531739 + 443 28871162 - PSPTO_4019 - hypothetical protein 3923 58.28 0 4531842..4532282 + 146 28871163 - PSPTO_4020 - acetyltransferase 3924 58.93 0 4532376..4533086 + 236 28871164 - PSPTO_4021 - S4 domain-containing protein 3925 52.81 -1 4533168..4533629 + 153 28871165 - PSPTO_4022 - hypothetical protein 3926 62.36 0 4533616..4534335 + 239 28871166 - PSPTO_4023 - hypothetical protein 3927 58.85 0 4534415..4535194 - 259 28871167 fnr-1 PSPTO_4024 - ferredoxin--NADP reductase 3928 60.52 0 4535318..4536244 + 308 28871168 - PSPTO_4025 - LysR family transcriptional regulator 3929 58.74 0 4536246..4536611 - 121 28871169 dgkA PSPTO_4026 - diacylglycerol kinase 3930 59.26 0 4536695..4537342 - 215 28871170 - PSPTO_4027 - LuxR family DNA-binding response regulator 3931 58.73 0 4537422..4537547 - 41 28871171 - PSPTO_4028 - hypothetical protein 3932 60.34 0 4537594..4538304 - 236 28871172 - PSPTO_4029 - hypothetical protein 3933 55.40 0 4538509..4538925 + 138 28871173 - PSPTO_4030 - hypothetical protein 3934 56.68 0 4539117..4540238 + 373 28871174 - PSPTO_4031 - decarboxylase family protein 3935 60.13 0 4540243..4540701 - 152 28871175 recX PSPTO_4032 - recombination regulator RecX 3936 58.40 0 4540716..4541780 - 354 28871176 recA PSPTO_4033 - recombinase A 3937 63.27 +1 4541874..4542374 - 166 28871177 - PSPTO_4034 - CinA domain-containing protein 3938 57.58 0 4543232..4543858 + 208 28871178 - PSPTO_4035 - hypothetical protein 3939 65.62 +1 4543840..4544319 - 159 28871179 - PSPTO_4036 - hypothetical protein 3940 63.30 +1 4544346..4544879 - 177 28871180 - PSPTO_4037 - lysozyme, putative 3941 55.25 0 4544959..4546386 - 475 28871181 - PSPTO_4038 - tail fiber domain-containing protein 3942 50.83 -1 4546414..4547076 - 220 28871182 - PSPTO_4039 - hypothetical protein 3943 49.59 -2 4547073..4547441 - 122 28871183 - PSPTO_4040 - hypothetical protein 3944 59.57 0 4547438..4550719 - 1093 28871184 - PSPTO_4041 - host specificity protein J, internal deletion 3945 59.65 0 4550719..4551117 - 132 28871185 - PSPTO_4042 - hypothetical protein 3946 61.19 0 4551120..4551722 - 200 28871186 - PSPTO_4043 - hypothetical protein 3947 61.03 0 4551722..4552306 - 194 28871187 - PSPTO_4044 - hypothetical protein 3948 50.67 -1 4552335..4552634 - 99 28871188 - PSPTO_4045 - hypothetical protein 3949 58.30 0 4552631..4556299 - 1222 28871189 - PSPTO_4046 - tail tape meausure protein 3950 50.69 -1 4556356..4556718 - 120 28871190 - PSPTO_4047 - hypothetical protein 3951 57.54 0 4556782..4557033 - 83 28871191 - PSPTO_4048 - hypothetical protein 3952 59.90 0 4557051..4557449 - 132 28871192 - PSPTO_4049 - hypothetical protein 3953 61.89 0 4557596..4558348 - 250 28871193 - PSPTO_4050 - hypothetical protein 3954 59.72 0 4558522..4559097 + 191 28871194 - PSPTO_4051 - hypothetical protein 3955 56.75 0 4559094..4559960 + 288 28871195 - PSPTO_4052 - hypothetical protein 3956 53.54 -1 4560148..4560246 - 32 28871196 - PSPTO_4053 - hypothetical protein 3957 59.29 0 4560424..4561236 + 270 28871197 - PSPTO_4054 - hypothetical protein 3958 57.44 0 4561445..4561639 + 64 28871198 - PSPTO_4055 - hypothetical protein 3959 52.89 -1 4561688..4562275 + 195 28871199 - PSPTO_4056 - hypothetical protein 3960 55.73 0 4562518..4563495 + 325 28871200 - PSPTO_4057 - phage integrase family site specific recombinase 3961 60.98 0 4563546..4566113 + 855 28871201 mutS PSPTO_4058 - DNA mismatch repair protein 3962 55.86 0 4566360..4566683 + 107 28871202 fdxA PSPTO_4059 - ferredoxin 3963 54.00 -1 4566810..4568270 - 486 28871203 - PSPTO_4060 - ISPsy6, transposase 3964 60.05 0 4568345..4569220 - 291 28871204 - PSPTO_4061 - LysR family transcriptional regulator 3965 57.95 0 4569320..4570489 + 389 28871205 - PSPTO_4062 - mandelate racemase/muconate lactonizing enzyme family protein 3966 54.43 -1 4570592..4571899 + 435 28871206 dctA-2 PSPTO_4063 - C4-dicarboxylate transport protein 3967 54.82 0 4571945..4572535 - 196 28871207 - PSPTO_4064 - TetR family transcriptional regulator 3968 55.73 0 4572655..4573413 + 252 28871208 - PSPTO_4065 - short chain dehydrogenase/reductase family oxidoreductase 3969 52.38 -1 4573483..4573776 - 97 28871209 - PSPTO_4066 - hypothetical protein 3970 49.28 -2 4573831..4574727 - 298 28871210 - PSPTO_4067 - short chain dehydrogenase/reductase family oxidoreductase 3971 58.90 0 4574899..4575966 + 355 28871211 - PSPTO_4068 - AraC family transcriptional regulator 3972 46.67 -2 4576000..4576164 + 54 28871212 - PSPTO_4069 - hypothetical protein 3973 50.23 -2 4576250..4576687 + 145 28871213 - PSPTO_4070 - hypothetical protein 3974 57.29 0 4576746..4577321 - 191 28871214 - PSPTO_4071 - hypothetical protein 3975 63.22 +1 4577419..4577766 - 115 28871215 - PSPTO_4072 - regulatory protein, putative 3976 60.67 0 4577872..4579104 - 410 28871216 fmdA PSPTO_4073 - formamidase 3977 58.26 0 4579229..4579918 - 229 28871217 - PSPTO_4074 - branched-chain amino acid ABC transporter, ATP-binding protein 3978 59.32 0 4579929..4580690 - 253 28871218 - PSPTO_4075 - branched-chain amino acid ABC transporter, ATP-binding protein 3979 58.50 0 4580687..4581862 - 391 28871219 - PSPTO_4076 - branched-chain amino acid ABC transporter, permease protein 3980 61.34 0 4581873..4582754 - 293 28871220 - PSPTO_4077 - branched-chain amino acid ABC transporter, permease protein 3981 58.07 0 4582872..4584116 - 414 28871221 - PSPTO_4078 - branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein 3982 60.73 0 4584274..4587759 + 1161 28871222 - PSPTO_4079 - sensor histidine kinase/response regulator 3983 61.88 0 4587746..4588414 + 222 28871223 - PSPTO_4080 - LuxR family DNA-binding response regulator 3984 59.04 0 4588320..4591742 - 1140 28871224 - PSPTO_4081 - Rhs family protein 3985 59.86 0 4592224..4592958 + 244 28871225 - PSPTO_4082 - short chain dehydrogenase/reductase family oxidoreductase 3986 60.75 0 4592960..4593838 - 292 28871226 - PSPTO_4083 - hypothetical protein 3987 60.85 0 4594116..4598948 + 1610 28871227 - PSPTO_4084 - mannuronan C-5-epimerase, putative 3988 53.33 -1 4599541..4599825 - 94 28871230 - PSPTO_4087 - hypothetical protein 3989 61.72 0 4600859..4601647 + 262 28871231 - PSPTO_4089 - alpha/beta fold family hydrolase 3990 56.56 0 4601797..4602360 + 187 28871232 ppiA PSPTO_4090 - peptidyl-prolyl cis-trans isomerase A 3991 58.54 0 4602462..4604294 + 610 28871233 - PSPTO_4091 - ABC transporter, ATP-binding/permease protein 3992 60.11 0 4604386..4605513 - 375 28871234 - PSPTO_4092 - hypothetical protein 3993 56.47 0 4605553..4610457 - 1634 28871235 - PSPTO_4093 - leucine-rich repeat-containing protein 3994 59.27 0 4610578..4611699 - 373 28871236 - PSPTO_4094 - 3-oxoacyl-(acyl carrier protein) synthase III 3995 61.86 0 4611940..4615851 - 1303 28871237 hrpA PSPTO_4095 - ATP-dependent helicase HrpA 3996 56.03 0 4616010..4616150 + 46 28871238 - PSPTO_4096 - hypothetical protein 3997 57.68 0 4616449..4618140 - 563 28871239 fadD-1 PSPTO_4097 - acyl-CoA synthetase 3998 58.79 0 4618496..4620184 - 562 28871240 fadD-2 PSPTO_4098 - acyl-CoA synthetase 3999 57.33 0 4620249..4620398 - 49 28871241 - PSPTO_4099 - hypothetical protein 4000 57.66 0 4620529..4621050 + 173 28871242 - PSPTO_4100 - MaoC-like domain-containing protein 4001 56.65 0 4621223..4622890 + 555 28871243 hopAK1 PSPTO_4101 - type III effector HopAK1 4002 54.04 -1 4623165..4623362 + 65 28871244 - PSPTO_4102 - hypothetical protein 4003 56.41 0 4623412..4623762 - 116 28871245 - PSPTO_4103 - hypothetical protein 4004 61.85 0 4623994..4626840 + 948 28871246 - PSPTO_4104 - ATP-dependent helicase HepA 4005 60.49 0 4626944..4628383 - 479 28871247 - PSPTO_4105 - major facilitator family transporter 4006 60.28 0 4628608..4630878 + 756 28871248 - PSPTO_4106 - GGDEF domain/EAL domain-containing protein 4007 57.78 0 4631003..4631317 - 104 28871249 - PSPTO_4107 - hypothetical protein 4008 58.76 0 4631636..4632760 + 374 28871250 - PSPTO_4108 - high-affinity branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein 4009 59.09 0 4632986..4633909 + 307 28871251 - PSPTO_4109 - high-affinity branched-chain amino acid ABC transporter, permease protein 4010 61.30 0 4633906..4635171 + 421 28871252 - PSPTO_4110 - leucine/isoleucine/valine transporter permease subunit 4011 60.81 0 4635168..4635935 + 255 28871253 - PSPTO_4111 - leucine/isoleucine/valine transporter ATP-binding subunit 4012 59.69 0 4635936..4636637 + 233 28871254 - PSPTO_4112 - high-affinity amino acid ABC transporter, ATP-binding protein 58.61 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0