version 1.0
Pseudomonas syringae pv. tomato str. DC3000, complete genome - 1..6397126 5475 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3851 58.70 0 4454323..4455000 + 225 28871091 - PSPTO_3944 - hypothetical protein 3852 60.70 0 4454997..4455197 + 66 28871092 - PSPTO_3945 - hypothetical protein 3853 56.41 0 4455286..4455753 + 155 28871093 - PSPTO_3946 - hypothetical protein 3854 55.43 0 4455743..4456000 + 85 28871094 - PSPTO_3947 - hypothetical protein 3855 61.72 0 4455993..4456376 + 127 28871095 - PSPTO_3948 - hypothetical protein 3856 55.75 0 4457531..4458574 - 347 28871096 - PSPTO_3949 - phage integrase family site specific recombinase 3857 55.98 0 4458800..4459510 - 236 28871097 purC PSPTO_3950 - phosphoribosylaminoimidazole-succinocarboxamide synthase 3858 60.74 0 4459539..4460297 - 252 28871098 - PSPTO_3951 - metallo-beta-lactamase superfamily protein 3859 60.77 0 4460298..4461416 - 372 28871099 - PSPTO_3952 - putative lipoprotein 3860 59.50 0 4461435..4462313 - 292 28871100 dapA PSPTO_3953 - dihydrodipicolinate synthase 3861 60.11 0 4462639..4463202 + 187 28871101 - PSPTO_3954 - hypothetical protein 3862 55.70 0 4463212..4463685 + 157 28871102 - PSPTO_3955 - AhpC/Tsa family protein 3863 60.88 0 4463752..4464822 - 356 28871103 - PSPTO_3956 - PerM family membrane protein 3864 61.51 0 4464855..4465106 - 83 28871104 - PSPTO_3957 - hypothetical protein 3865 60.04 0 4465247..4466680 + 477 28871105 - PSPTO_3958 - hypothetical protein 3866 60.06 0 4466782..4467840 - 352 28871106 nadA PSPTO_3959 - quinolinate synthetase 3867 59.29 0 4468247..4469845 + 532 28871107 pglA PSPTO_3960 - polygalacturonase 3868 40.80 -2 4470140..4470340 + 66 28871108 - PSPTO_3961 - hypothetical protein 3869 42.86 -2 4470547..4470651 + 34 28871109 - PSPTO_3962 - hypothetical protein 3870 54.19 -1 4470781..4471758 - 325 28871110 - PSPTO_3963 - ISPssy, transposase 3871 51.16 -1 4472738..4474291 + 517 28871111 - PSPTO_3965 - hypothetical protein 3872 52.22 -1 4474543..4474902 + 119 28871112 - PSPTO_3966 - ISPsy5, Orf1 3873 61.23 0 4476573..4477253 - 226 28871113 exsB PSPTO_3968 - exsB protein 3874 58.80 0 4477264..4477911 - 215 28871114 - PSPTO_3969 - radical SAM domain-containing protein 3875 58.73 0 4478083..4478901 - 272 28871115 - PSPTO_3970 - hypothetical protein 3876 57.29 0 4478908..4479408 - 166 28871116 pal PSPTO_3971 - peptidoglycan-associated lipoprotein 3877 55.76 0 4479461..4480762 - 433 28871117 tolB PSPTO_3972 - translocation protein TolB 3878 53.59 -1 4480759..4481829 - 356 28871118 tolA PSPTO_3973 - tolA protein 3879 55.48 0 4481829..4482293 - 154 28871119 tolR-2 PSPTO_3974 - tolR protein 3880 58.05 0 4482308..4483003 - 231 28871120 tolQ-2 PSPTO_3975 - tolQ protein 3881 56.62 0 4482993..4483460 - 155 28871121 - PSPTO_3976 - hypothetical protein 3882 60.38 0 4483595..4484533 - 312 28871122 ruvB PSPTO_3977 - Holliday junction DNA helicase B 3883 58.95 0 4484657..4485265 - 202 28871123 ruvA PSPTO_3978 - Holliday junction DNA helicase motor protein 3884 61.96 0 4485374..4485904 - 176 28871124 ruvC PSPTO_3979 - Holliday junction resolvase 3885 58.10 0 4486035..4486781 - 248 28871125 - PSPTO_3980 - hypothetical protein 3886 59.40 0 4486896..4488671 - 591 28871126 aspS PSPTO_3981 - aspartyl-tRNA synthetase 3887 52.71 -1 4488956..4489213 - 85 28871127 - PSPTO_3982 - hypothetical protein 3888 51.27 -1 4489660..4490133 - 157 28871128 - PSPTO_3983 - Dps family protein 3889 57.21 0 4490988..4491209 + 73 28871129 - PSPTO_3984 - cold shock domain-contain protein 3890 54.11 -1 4491291..4491497 - 68 28871130 - PSPTO_3985 - hypothetical protein 3891 56.71 0 4491494..4491925 - 143 28871131 - PSPTO_3986 - hypothetical protein 3892 54.94 0 4492830..4494176 + 448 28871132 oprD PSPTO_3987 - porin D 3893 59.21 0 4494353..4496068 + 571 28871133 proS PSPTO_3988 - prolyl-tRNA synthetase 3894 57.68 0 4496135..4497091 + 318 28871134 - PSPTO_3989 - putative lipoprotein 3895 58.76 0 4497127..4498188 - 353 28871135 dinP PSPTO_3990 - DNA polymerase IV 3896 61.52 0 4499143..4501785 + 880 28871136 - PSPTO_3991 - hypothetical protein 3897 60.45 0 4501785..4503119 + 444 28871137 - PSPTO_3992 - hypothetical protein 3898 60.44 0 4503214..4505109 - 631 28871138 kup PSPTO_3993 - potassium uptake protein 3899 59.23 0 4505431..4506519 + 362 28871139 - PSPTO_3994 - hypothetical protein 3900 43.19 -2 4507088..4508254 + 388 28871140 - PSPTO_3995 - abortive infection protein, internal deletion 3901 56.24 0 4509044..4510597 - 517 28871141 - PSPTO_3996 - ISPsy5, transposase 3902 48.33 -2 4510615..4510974 - 119 28871142 - PSPTO_3997 - ISPsy5, Orf1 3903 48.33 -2 4511447..4511806 + 119 28871143 - PSPTO_3998 - ISPsy5, Orf1 3904 56.31 0 4511824..4513377 + 517 28871144 - PSPTO_3999 - ISPsy5, transposase 3905 49.49 -2 4514766..4515260 - 164 28871145 avrPto1 PSPTO_4001 - type III effector protein AvrPto1 3906 62.76 +1 4517028..4517564 - 178 28871146 - PSPTO_4003 - hypothetical protein 3907 63.02 +1 4517561..4518493 - 310 28871147 - PSPTO_4004 - hypothetical protein 3908 58.04 0 4518582..4519010 + 142 28871148 - PSPTO_4005 - hypothetical protein 3909 59.74 0 4518980..4521406 - 808 28871149 - PSPTO_4006 - tail fiber protein H, putative 3910 61.71 0 4521415..4521939 - 174 28871150 - PSPTO_4007 - hypothetical protein 3911 59.56 0 4521997..4522404 - 135 28871151 - PSPTO_4008 - hypothetical protein 3912 51.95 -1 4522401..4522631 - 76 28871152 cro PSPTO_4009 - regulatory protein Cro 3913 53.90 -1 4522782..4523486 + 234 28871153 - PSPTO_4010 - repressor protein cI 3914 56.84 0 4524096..4524380 - 94 28871154 - PSPTO_4011 - hypothetical protein 3915 58.53 0 4524602..4525363 - 253 28871155 - PSPTO_4012 - hypothetical protein 3916 59.24 0 4525463..4526485 + 340 28871156 - PSPTO_4013 - ISPsy4, transposase 3917 57.78 0 4526482..4527291 + 269 28871157 - PSPTO_4014 - transposase/IS protein 3918 55.02 0 4527317..4527565 - 82 28871158 - PSPTO_4015 - hypothetical protein 3919 55.56 0 4527558..4527764 - 68 28871159 - PSPTO_4016 - hypothetical protein 3920 53.70 -1 4527761..4528300 - 179 28871160 - PSPTO_4017 - hypothetical protein 3921 54.88 0 4528754..4530373 - 539 28871161 - PSPTO_4018 - hypothetical protein 3922 60.29 0 4530408..4531739 + 443 28871162 - PSPTO_4019 - hypothetical protein 3923 58.28 0 4531842..4532282 + 146 28871163 - PSPTO_4020 - acetyltransferase 3924 58.93 0 4532376..4533086 + 236 28871164 - PSPTO_4021 - S4 domain-containing protein 3925 52.81 -1 4533168..4533629 + 153 28871165 - PSPTO_4022 - hypothetical protein 3926 62.36 0 4533616..4534335 + 239 28871166 - PSPTO_4023 - hypothetical protein 3927 58.85 0 4534415..4535194 - 259 28871167 fnr-1 PSPTO_4024 - ferredoxin--NADP reductase 3928 60.52 0 4535318..4536244 + 308 28871168 - PSPTO_4025 - LysR family transcriptional regulator 3929 58.74 0 4536246..4536611 - 121 28871169 dgkA PSPTO_4026 - diacylglycerol kinase 3930 59.26 0 4536695..4537342 - 215 28871170 - PSPTO_4027 - LuxR family DNA-binding response regulator 3931 58.73 0 4537422..4537547 - 41 28871171 - PSPTO_4028 - hypothetical protein 3932 60.34 0 4537594..4538304 - 236 28871172 - PSPTO_4029 - hypothetical protein 3933 55.40 0 4538509..4538925 + 138 28871173 - PSPTO_4030 - hypothetical protein 3934 56.68 0 4539117..4540238 + 373 28871174 - PSPTO_4031 - decarboxylase family protein 3935 60.13 0 4540243..4540701 - 152 28871175 recX PSPTO_4032 - recombination regulator RecX 3936 58.40 0 4540716..4541780 - 354 28871176 recA PSPTO_4033 - recombinase A 3937 63.27 +1 4541874..4542374 - 166 28871177 - PSPTO_4034 - CinA domain-containing protein 3938 57.58 0 4543232..4543858 + 208 28871178 - PSPTO_4035 - hypothetical protein 3939 65.62 +1 4543840..4544319 - 159 28871179 - PSPTO_4036 - hypothetical protein 3940 63.30 +1 4544346..4544879 - 177 28871180 - PSPTO_4037 - lysozyme, putative 3941 55.25 0 4544959..4546386 - 475 28871181 - PSPTO_4038 - tail fiber domain-containing protein 3942 50.83 -1 4546414..4547076 - 220 28871182 - PSPTO_4039 - hypothetical protein 3943 49.59 -2 4547073..4547441 - 122 28871183 - PSPTO_4040 - hypothetical protein 3944 59.57 0 4547438..4550719 - 1093 28871184 - PSPTO_4041 - host specificity protein J, internal deletion 3945 59.65 0 4550719..4551117 - 132 28871185 - PSPTO_4042 - hypothetical protein 3946 61.19 0 4551120..4551722 - 200 28871186 - PSPTO_4043 - hypothetical protein 3947 61.03 0 4551722..4552306 - 194 28871187 - PSPTO_4044 - hypothetical protein 3948 50.67 -1 4552335..4552634 - 99 28871188 - PSPTO_4045 - hypothetical protein 3949 58.30 0 4552631..4556299 - 1222 28871189 - PSPTO_4046 - tail tape meausure protein 3950 50.69 -1 4556356..4556718 - 120 28871190 - PSPTO_4047 - hypothetical protein 58.61 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0