version 1.0
Pseudomonas syringae pv. tomato str. DC3000, complete genome - 1..6397126 5475 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3813 56.98 0 4416569..4417507 - 312 28871053 - PSPTO_3901 - hypothetical protein 3814 59.28 0 4417685..4418659 - 324 28871054 cysK PSPTO_3902 - cysteine synthase A 3815 57.61 0 4418787..4419857 + 356 28871055 - PSPTO_3903 - hypothetical protein 3816 50.98 -1 4419919..4420071 - 50 28871056 - PSPTO_3904 - hypothetical protein 3817 58.27 0 4420195..4421040 + 281 28871057 - PSPTO_3905 - AAA family ATPase 3818 57.59 0 4421080..4422258 + 392 28871058 - PSPTO_3906 - hypothetical protein 3819 53.78 -1 4422424..4423176 + 250 28871059 - PSPTO_3907 - hypothetical protein 3820 56.57 0 4423209..4423733 - 174 28871060 - PSPTO_3908 - hypothetical protein 3821 59.44 0 4423780..4424568 - 262 28871061 - PSPTO_3909 - hypothetical protein 3822 61.22 0 4424645..4425121 - 158 28871062 - PSPTO_3910 - hypothetical protein 3823 61.52 0 4425254..4427311 + 685 28871063 - PSPTO_3911 - protease II 3824 60.00 0 4427438..4427872 + 144 28871064 - PSPTO_3912 - cyclic nucleotide-binding protein 3825 60.80 0 4427938..4428312 + 124 28871065 - PSPTO_3913 - hypothetical protein 3826 60.68 0 4428608..4430377 + 589 28871066 copA PSPTO_3914 - copper resistance protein A 3827 62.55 0 4430482..4431258 + 258 28871067 - PSPTO_3915 - copper resistance protein B 3828 60.44 0 4431331..4431828 + 165 28871068 - PSPTO_3916 - hypothetical protein 3829 60.37 0 4431937..4432317 + 126 28871069 - PSPTO_3917 - hypothetical protein 3830 57.11 0 4432322..4432771 - 149 28871070 - PSPTO_3918 - hypothetical protein 3831 62.12 0 4432983..4433576 + 197 28871071 - PSPTO_3919 - nitroreductase family protein 3832 60.45 0 4433652..4434584 - 310 28871072 - PSPTO_3920 - D-isomer specific 2-hydroxyacid dehydrogenase family protein 3833 56.12 0 4434655..4434948 - 97 28871073 - PSPTO_3921 - hypothetical protein 3834 61.55 0 4434945..4436078 - 377 28871074 rnd PSPTO_3922 - ribonuclease D 3835 52.98 -1 4436285..4437928 - 547 28871075 - PSPTO_3923 - hypothetical protein 3836 59.47 0 4438161..4439882 - 573 28871076 sfcA PSPTO_3924 - malate dehydrogenase 3837 56.52 0 4440165..4440647 - 160 28871077 - PSPTO_3925 - gas vesicle protein, putative 3838 54.05 -1 4441402..4442067 - 221 28871078 - PSPTO_3927 - hypothetical protein 3839 43.84 -2 4442900..4443118 - 72 28871079 - PSPTO_3929 - cold shock domain-contain protein 3840 42.81 -2 4443121..4444302 - 393 28871080 - PSPTO_3930 - retron reverse transcriptase 3841 59.72 0 4445395..4445538 + 47 28871081 - PSPTO_3931 - hypothetical protein 3842 60.12 0 4445527..4446045 - 172 28871082 - PSPTO_3932 - hypothetical protein 3843 62.36 0 4446042..4446575 - 177 28871083 - PSPTO_3933 - lysozyme, putative 3844 54.48 0 4446636..4446914 - 92 28871084 - PSPTO_3934 - tail fiber assembly domain-containing protein 3845 49.30 -2 4446907..4447263 - 118 28871085 - PSPTO_3935 - hypothetical protein 3846 55.46 0 4447263..4448261 - 332 28871086 - PSPTO_3936 - tail fiber domain-containing protein 3847 50.83 -1 4448289..4448951 - 220 28871087 - PSPTO_3937 - hypothetical protein 3848 49.32 -2 4448948..4449316 - 122 28871088 - PSPTO_3938 - hypothetical protein 3849 59.37 0 4453493..4454095 + 200 28871089 - PSPTO_3942 - hypothetical protein 3850 59.49 0 4454139..4454333 + 64 28871090 - PSPTO_3943 - carbon storage regulator, putative 3851 58.70 0 4454323..4455000 + 225 28871091 - PSPTO_3944 - hypothetical protein 3852 60.70 0 4454997..4455197 + 66 28871092 - PSPTO_3945 - hypothetical protein 3853 56.41 0 4455286..4455753 + 155 28871093 - PSPTO_3946 - hypothetical protein 3854 55.43 0 4455743..4456000 + 85 28871094 - PSPTO_3947 - hypothetical protein 3855 61.72 0 4455993..4456376 + 127 28871095 - PSPTO_3948 - hypothetical protein 3856 55.75 0 4457531..4458574 - 347 28871096 - PSPTO_3949 - phage integrase family site specific recombinase 3857 55.98 0 4458800..4459510 - 236 28871097 purC PSPTO_3950 - phosphoribosylaminoimidazole-succinocarboxamide synthase 3858 60.74 0 4459539..4460297 - 252 28871098 - PSPTO_3951 - metallo-beta-lactamase superfamily protein 3859 60.77 0 4460298..4461416 - 372 28871099 - PSPTO_3952 - putative lipoprotein 3860 59.50 0 4461435..4462313 - 292 28871100 dapA PSPTO_3953 - dihydrodipicolinate synthase 3861 60.11 0 4462639..4463202 + 187 28871101 - PSPTO_3954 - hypothetical protein 3862 55.70 0 4463212..4463685 + 157 28871102 - PSPTO_3955 - AhpC/Tsa family protein 3863 60.88 0 4463752..4464822 - 356 28871103 - PSPTO_3956 - PerM family membrane protein 3864 61.51 0 4464855..4465106 - 83 28871104 - PSPTO_3957 - hypothetical protein 3865 60.04 0 4465247..4466680 + 477 28871105 - PSPTO_3958 - hypothetical protein 3866 60.06 0 4466782..4467840 - 352 28871106 nadA PSPTO_3959 - quinolinate synthetase 3867 59.29 0 4468247..4469845 + 532 28871107 pglA PSPTO_3960 - polygalacturonase 3868 40.80 -2 4470140..4470340 + 66 28871108 - PSPTO_3961 - hypothetical protein 3869 42.86 -2 4470547..4470651 + 34 28871109 - PSPTO_3962 - hypothetical protein 3870 54.19 -1 4470781..4471758 - 325 28871110 - PSPTO_3963 - ISPssy, transposase 3871 51.16 -1 4472738..4474291 + 517 28871111 - PSPTO_3965 - hypothetical protein 3872 52.22 -1 4474543..4474902 + 119 28871112 - PSPTO_3966 - ISPsy5, Orf1 3873 61.23 0 4476573..4477253 - 226 28871113 exsB PSPTO_3968 - exsB protein 3874 58.80 0 4477264..4477911 - 215 28871114 - PSPTO_3969 - radical SAM domain-containing protein 3875 58.73 0 4478083..4478901 - 272 28871115 - PSPTO_3970 - hypothetical protein 3876 57.29 0 4478908..4479408 - 166 28871116 pal PSPTO_3971 - peptidoglycan-associated lipoprotein 3877 55.76 0 4479461..4480762 - 433 28871117 tolB PSPTO_3972 - translocation protein TolB 3878 53.59 -1 4480759..4481829 - 356 28871118 tolA PSPTO_3973 - tolA protein 3879 55.48 0 4481829..4482293 - 154 28871119 tolR-2 PSPTO_3974 - tolR protein 3880 58.05 0 4482308..4483003 - 231 28871120 tolQ-2 PSPTO_3975 - tolQ protein 3881 56.62 0 4482993..4483460 - 155 28871121 - PSPTO_3976 - hypothetical protein 3882 60.38 0 4483595..4484533 - 312 28871122 ruvB PSPTO_3977 - Holliday junction DNA helicase B 3883 58.95 0 4484657..4485265 - 202 28871123 ruvA PSPTO_3978 - Holliday junction DNA helicase motor protein 3884 61.96 0 4485374..4485904 - 176 28871124 ruvC PSPTO_3979 - Holliday junction resolvase 3885 58.10 0 4486035..4486781 - 248 28871125 - PSPTO_3980 - hypothetical protein 3886 59.40 0 4486896..4488671 - 591 28871126 aspS PSPTO_3981 - aspartyl-tRNA synthetase 3887 52.71 -1 4488956..4489213 - 85 28871127 - PSPTO_3982 - hypothetical protein 3888 51.27 -1 4489660..4490133 - 157 28871128 - PSPTO_3983 - Dps family protein 3889 57.21 0 4490988..4491209 + 73 28871129 - PSPTO_3984 - cold shock domain-contain protein 3890 54.11 -1 4491291..4491497 - 68 28871130 - PSPTO_3985 - hypothetical protein 3891 56.71 0 4491494..4491925 - 143 28871131 - PSPTO_3986 - hypothetical protein 3892 54.94 0 4492830..4494176 + 448 28871132 oprD PSPTO_3987 - porin D 3893 59.21 0 4494353..4496068 + 571 28871133 proS PSPTO_3988 - prolyl-tRNA synthetase 3894 57.68 0 4496135..4497091 + 318 28871134 - PSPTO_3989 - putative lipoprotein 3895 58.76 0 4497127..4498188 - 353 28871135 dinP PSPTO_3990 - DNA polymerase IV 3896 61.52 0 4499143..4501785 + 880 28871136 - PSPTO_3991 - hypothetical protein 3897 60.45 0 4501785..4503119 + 444 28871137 - PSPTO_3992 - hypothetical protein 3898 60.44 0 4503214..4505109 - 631 28871138 kup PSPTO_3993 - potassium uptake protein 3899 59.23 0 4505431..4506519 + 362 28871139 - PSPTO_3994 - hypothetical protein 3900 43.19 -2 4507088..4508254 + 388 28871140 - PSPTO_3995 - abortive infection protein, internal deletion 3901 56.24 0 4509044..4510597 - 517 28871141 - PSPTO_3996 - ISPsy5, transposase 3902 48.33 -2 4510615..4510974 - 119 28871142 - PSPTO_3997 - ISPsy5, Orf1 3903 48.33 -2 4511447..4511806 + 119 28871143 - PSPTO_3998 - ISPsy5, Orf1 3904 56.31 0 4511824..4513377 + 517 28871144 - PSPTO_3999 - ISPsy5, transposase 3905 49.49 -2 4514766..4515260 - 164 28871145 avrPto1 PSPTO_4001 - type III effector protein AvrPto1 3906 62.76 +1 4517028..4517564 - 178 28871146 - PSPTO_4003 - hypothetical protein 3907 63.02 +1 4517561..4518493 - 310 28871147 - PSPTO_4004 - hypothetical protein 3908 58.04 0 4518582..4519010 + 142 28871148 - PSPTO_4005 - hypothetical protein 3909 59.74 0 4518980..4521406 - 808 28871149 - PSPTO_4006 - tail fiber protein H, putative 3910 61.71 0 4521415..4521939 - 174 28871150 - PSPTO_4007 - hypothetical protein 3911 59.56 0 4521997..4522404 - 135 28871151 - PSPTO_4008 - hypothetical protein 3912 51.95 -1 4522401..4522631 - 76 28871152 cro PSPTO_4009 - regulatory protein Cro 58.61 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0