version 1.0
Pseudomonas syringae pv. tomato str. DC3000, complete genome - 1..6397126 5475 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3674 63.64 +1 4258692..4259750 + 352 28870917 - PSPTO_3762 - von Willebrand factor type A domain-containing protein 3675 64.98 +1 4259747..4261465 + 572 28870918 - PSPTO_3763 - TPR domain-containing protein 3676 63.89 +1 4261462..4263117 + 551 28870919 - PSPTO_3764 - hypothetical protein 3677 63.69 +1 4263160..4264404 + 414 28870920 sbcD PSPTO_3765 - exonuclease SbcD 3678 61.95 0 4264401..4268045 + 1214 28870921 sbcC PSPTO_3766 - exonuclease SbcC 3679 52.49 -1 4268271..4268531 + 86 28870922 - PSPTO_3767 - hypothetical protein 3680 57.63 0 4268669..4269841 - 390 28870923 - PSPTO_3768 - hypothetical protein 3681 56.64 0 4269921..4270319 - 132 28870924 - PSPTO_3769 - hypothetical protein 3682 60.83 0 4270412..4271404 - 330 28870925 - PSPTO_3770 - hypothetical protein 3683 59.79 0 4271484..4272791 - 435 28870926 - PSPTO_3771 - major facilitator family transporter 3684 61.27 0 4273005..4274747 + 580 28870927 - PSPTO_3772 - dihydroxy-acid dehydratase 3685 62.75 0 4274862..4275575 + 237 28870928 - PSPTO_3773 - GntR family transcriptional regulator 3686 54.19 -1 4275912..4276496 + 194 28870929 - PSPTO_3774 - hypothetical protein 3687 59.30 0 4276503..4276787 + 94 28870930 - PSPTO_3775 - hypothetical protein 3688 47.43 -2 4277420..4277866 + 148 28870931 - PSPTO_3776 - hypothetical protein 3689 57.97 0 4278166..4280556 - 796 28870932 - PSPTO_3777 - hypothetical protein 3690 61.29 0 4280584..4281606 - 340 28870933 - PSPTO_3778 - BNR/Asp-box repeat-containing protein 3691 60.69 0 4281838..4283193 - 451 28870934 - PSPTO_3779 - hypothetical protein 3692 58.03 0 4283714..4284871 - 385 28870935 - PSPTO_3780 - glutathionylspermidine synthase family protein 3693 61.27 0 4284883..4285605 - 240 28870936 - PSPTO_3781 - hypothetical protein 3694 59.07 0 4285657..4286064 - 135 28870937 - PSPTO_3782 - hypothetical protein 3695 59.36 0 4286096..4286752 - 218 28870938 - PSPTO_3783 - hypothetical protein 3696 59.26 0 4286749..4287774 - 341 28870939 - PSPTO_3784 - potassium channel protein, putative 3697 58.24 0 4287862..4288419 - 185 28870940 - PSPTO_3785 - rhomboid family protein 3698 61.58 0 4288450..4289157 - 235 28870941 - PSPTO_3786 - PspA/IM30 family protein 3699 55.50 0 4289184..4289837 - 217 28870942 - PSPTO_3787 - hypothetical protein 3700 60.25 0 4290096..4292762 - 888 28870943 pepN PSPTO_3788 - aminopeptidase N 3701 59.05 0 4292775..4293575 - 266 28870944 - PSPTO_3789 - hypothetical protein 3702 54.02 -1 4293605..4293865 - 86 28870945 - PSPTO_3790 - hypothetical protein 3703 60.82 0 4293894..4294748 - 284 28870946 - PSPTO_3791 - rhomboid family protein 3704 61.93 0 4294763..4295734 - 323 28870947 - PSPTO_3792 - serine/threonine protein phosphatase 3705 61.84 0 4295734..4296624 - 296 28870948 ppnK PSPTO_3793 - inorganic polyphosphate/ATP-NAD kinase 3706 53.62 -1 4296666..4297079 + 137 28870949 - PSPTO_3794 - hypothetical protein 3707 49.66 -2 4297265..4297558 + 97 28870950 - PSPTO_3795 - hypothetical protein 3708 55.52 0 4297651..4298718 - 355 28870951 - PSPTO_3796 - GGDEF domain-containing protein 3709 65.65 +1 4299116..4300099 + 327 28870952 - PSPTO_3797 - hypothetical protein 3710 60.42 0 4300065..4301345 - 426 28870953 arsB PSPTO_3798 - arsenical pump membrane protein 3711 60.46 0 4301345..4302553 - 402 28870954 fsr PSPTO_3799 - fosmidomycin resistance protein 3712 53.27 -1 4303185..4304207 - 340 28870955 - PSPTO_3800 - ISPsy7, transposase 3713 63.00 +1 4304466..4305803 - 445 28870956 - PSPTO_3801 - major facilitator family transporter 3714 64.13 +1 4305951..4306895 - 314 28870957 - PSPTO_3802 - 1-aminocyclopropane-1-carboxylate deaminase, putative 3715 61.67 0 4306921..4308960 - 679 28870958 fadH PSPTO_3803 - 2,4-dienoyl-CoA reductase 3716 62.79 +1 4309166..4310299 + 377 28870959 - PSPTO_3804 - carbon-nitrogen family hydrolase 3717 62.73 0 4310302..4311342 + 346 28870960 - PSPTO_3805 - AraC family transcriptional regulator 3718 63.58 +1 4311900..4313423 + 507 28870961 ilvA-1 PSPTO_3806 - threonine dehydratase 3719 58.67 0 4313633..4314457 - 274 28870962 - PSPTO_3807 - putative lipoprotein 3720 54.00 -1 4314740..4316200 - 486 28870963 - PSPTO_3808 - ISPsy6, transposase 3721 64.33 +1 4316872..4317597 - 241 28870964 - PSPTO_3809 - oxidoreductase 3722 61.55 0 4317687..4318898 - 403 28870965 metZ PSPTO_3810 - O-succinylhomoserine sulfhydrylase 3723 58.71 0 4318919..4320427 - 502 28870966 purF PSPTO_3811 - amidophosphoribosyltransferase 3724 57.14 0 4320440..4321027 - 195 28870967 - PSPTO_3812 - cvpA family protein 3725 62.21 0 4321146..4321796 - 216 28870968 - PSPTO_3813 - hypothetical protein 3726 61.84 0 4321780..4323084 - 434 28870969 folC PSPTO_3814 - folylpolyglutamate synthase/dihydrofolate synthase 3727 60.04 0 4323081..4324001 - 306 28870970 accD PSPTO_3815 - acetyl-CoA carboxylase subunit beta 3728 62.32 0 4324254..4324874 - 206 28870971 trpF PSPTO_3816 - N-(5'-phosphoribosyl)anthranilate isomerase 3729 60.97 0 4324935..4325759 - 274 162533082 truA PSPTO_3817 - tRNA pseudouridine synthase A 3730 61.64 0 4325920..4328763 - 947 28870972 - PSPTO_3818 - hypothetical protein 3731 60.16 0 4328873..4329886 - 337 28870973 asd-2 PSPTO_3819 - aspartate-semialdehyde dehydrogenase 3732 57.58 0 4329972..4330532 - 186 28870974 - PSPTO_3820 - hypothetical protein 3733 60.20 0 4330552..4331154 - 200 28870975 - PSPTO_3821 - putative lipoprotein 3734 57.42 0 4331281..4331940 - 219 28870976 - PSPTO_3822 - TetR family transcriptional regulator 3735 58.82 0 4332060..4332722 - 220 28870977 - PSPTO_3823 - hypothetical protein 3736 61.58 0 4333052..4333837 - 261 28870978 - PSPTO_3824 - TatD family deoxyribonuclease 3737 59.38 0 4333852..4334208 - 118 28870979 pilZ PSPTO_3825 - type IV pilus biogenesis protein PilZ 3738 60.69 0 4334243..4335229 - 328 28870980 holB PSPTO_3826 - DNA polymerase III subunit delta' 3739 63.67 +1 4335222..4335854 - 210 28870981 tmk PSPTO_3827 - thymidylate kinase 3740 60.53 0 4335874..4337013 - 379 28870982 - PSPTO_3828 - hypothetical protein 3741 62.50 0 4337017..4337832 - 271 28870983 pabC PSPTO_3829 - 4-amino-4-deoxychorismate lyase 3742 61.37 0 4337832..4339076 - 414 28870984 fabF PSPTO_3830 - 3-oxoacyl-(acyl carrier protein) synthase II 3743 51.05 -1 4339190..4339426 - 78 28870985 acpP PSPTO_3831 - acyl carrier protein 3744 56.72 0 4339619..4340362 - 247 28870986 fabG PSPTO_3832 - 3-ketoacyl-(acyl-carrier-protein) reductase 3745 62.09 0 4340378..4341316 - 312 28870987 fabD PSPTO_3833 - malonyl CoA-acyl carrier protein transacylase 3746 60.22 0 4341433..4342425 - 330 28870988 plsX PSPTO_3834 - putative glycerol-3-phosphate acyltransferase PlsX 3747 53.55 -1 4342460..4342642 - 60 28870989 rpmF PSPTO_3835 - 50S ribosomal protein L32 3748 54.92 0 4342656..4343183 - 175 28870990 - PSPTO_3836 - hypothetical protein 3749 63.04 +1 4343290..4343868 + 192 28870991 maf-1 PSPTO_3837 - Maf-like protein 3750 57.06 0 4343921..4344919 - 332 28870992 sppA PSPTO_3838 - signal peptide peptidase SppA, 36K type 3751 59.73 0 4344943..4345605 - 220 28870993 - PSPTO_3839 - HAD-superfamily hydrolase 3752 60.50 0 4345595..4346551 - 318 170660217 rluC PSPTO_3840 - ribosomal large subunit pseudouridine synthase C 3753 61.85 0 4347221..4350607 + 1128 28870994 - PSPTO_3841 - ribonuclease, Rne/Rng family protein 3754 59.02 0 4350890..4351909 - 339 28870995 murB PSPTO_3842 - UDP-N-acetylenolpyruvoylglucosamine reductase 3755 62.22 0 4351944..4352708 - 254 28870996 kdsB PSPTO_3843 - 3-deoxy-manno-octulosonate cytidylyltransferase 3756 58.60 0 4352705..4352890 - 61 28870997 - PSPTO_3844 - hypothetical protein 3757 62.45 0 4352908..4353903 - 331 28870998 lpxK PSPTO_3845 - tetraacyldisaccharide 4'-kinase 3758 59.26 0 4353903..4354334 - 143 28870999 - PSPTO_3846 - biopolymer ExbD/TolR family transporter 3759 60.31 0 4354331..4354975 - 214 28871000 - PSPTO_3847 - MotA/TolQ/ExbB proton channel family protein 3760 64.55 +1 4355091..4357307 - 738 28871001 - PSPTO_3848 - DNA internalization-related competence protein ComEC/Rec2 3761 56.21 0 4357545..4359572 + 675 28871002 - PSPTO_3849 - Rhs element Vgr protein 3762 56.46 0 4359569..4360420 + 283 28871003 - PSPTO_3850 - hypothetical protein 3763 58.91 0 4360417..4363731 + 1104 28871004 - PSPTO_3851 - hypothetical protein 3764 55.16 0 4363695..4364615 + 306 28871005 - PSPTO_3852 - hypothetical protein 3765 54.89 0 4364612..4365511 + 299 28871006 - PSPTO_3853 - hypothetical protein 3766 58.56 0 4365545..4366333 - 262 28871007 - PSPTO_3854 - ABC transporter, permease protein 3767 56.91 0 4366330..4367262 - 310 28871008 - PSPTO_3855 - ABC transporter, ATP-binding protein 3768 61.86 0 4367430..4368053 - 207 28871009 - PSPTO_3856 - glutathione S-transferase family protein 3769 62.21 0 4368229..4370676 + 815 28871010 - PSPTO_3857 - acyl-CoA dehydrogenase 3770 59.37 0 4370753..4371163 + 136 28871011 - PSPTO_3858 - hypothetical protein 3771 60.70 0 4371357..4372211 + 284 28871012 - PSPTO_3859 - hypothetical protein 3772 59.51 0 4372314..4374983 - 889 28871013 aceE-1 PSPTO_3860 - 2-oxoacid dehydrogenase subunit E1 3773 64.24 +1 4375128..4375580 + 150 28871014 - PSPTO_3861 - MarR family transcriptional regulator 58.61 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.