version 1.0
Pseudomonas syringae pv. tomato str. DC3000, complete genome - 1..6397126 5475 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1 57.94 0 339..1874 + 511 28867244 dnaA PSPTO_0001 - chromosomal replication initiation protein 2 56.61 0 1913..3016 + 367 28867245 dnaN PSPTO_0002 - DNA polymerase III subunit beta 3 56.34 0 3039..4142 + 367 28867246 recF PSPTO_0003 - recombination protein F 4 56.16 0 4147..6564 + 805 28867247 gyrB PSPTO_0004 - DNA gyrase subunit B 5 53.72 -1 7092..8798 + 568 28867248 - PSPTO_0005 - type I restriction-modification system, M subunit, putative 6 51.15 -1 8861..10168 + 435 28867249 - PSPTO_0006 - type I restriction-modification system S subunit 7 55.03 0 10179..11063 + 294 28867250 - PSPTO_0007 - hypothetical protein 8 55.97 0 11067..14366 + 1099 28867251 - PSPTO_0008 - HsdR family type I site-specific deoxyribonuclease 9 58.05 0 14512..15741 - 409 28867252 - PSPTO_0009 - ISPsy3, transposase 10 55.70 0 16743..17453 + 236 28867253 - PSPTO_0011 - hypothetical protein 11 54.76 0 17514..18017 + 167 28867254 - PSPTO_0012 - hypothetical protein 12 57.72 0 17992..18561 + 189 28867255 - PSPTO_0013 - hypothetical protein 13 65.98 +1 18573..18863 - 96 28867256 - PSPTO_0014 - hypothetical protein 14 55.56 0 19321..19932 + 203 28867257 - PSPTO_0015 - hypothetical protein 15 53.42 -1 19968..20435 + 155 28867258 - PSPTO_0016 - hypothetical protein 16 53.74 -1 20738..23143 - 801 28867259 - PSPTO_0017 - helicase/SNF2 domain-containing protein 17 57.78 0 23290..24099 - 269 28867260 - PSPTO_0018 - transposase/IS protein 18 59.24 0 24096..25118 - 340 28867261 - PSPTO_0019 - ISPsy4, transposase 19 54.42 -1 25187..25537 - 116 28867262 - PSPTO_0020 - hypothetical protein 20 51.09 -1 25556..27796 - 746 28867263 - PSPTO_0021 - hypothetical protein 21 56.15 0 28478..29323 + 281 28867264 - PSPTO_0022 - DNA-binding protein 22 53.67 -1 29320..29919 + 199 28867265 - PSPTO_0023 - hypothetical protein 23 59.42 0 30850..30987 + 45 28867266 - PSPTO_0024 - hypothetical protein 24 56.51 0 31338..31967 + 209 28867267 - PSPTO_0025 - HAD superfamily hydrolase 25 52.91 -1 32022..33068 - 348 28867268 - PSPTO_0026 - hypothetical protein 26 51.59 -1 33254..33976 + 240 28867269 - PSPTO_0027 - hypothetical protein 27 46.57 -2 33978..35933 + 651 28867270 - PSPTO_0028 - transposase 28 51.07 -1 35933..36868 + 311 28867271 - PSPTO_0029 - transposition helper protein 29 53.42 -1 36881..38767 + 628 28867272 - PSPTO_0030 - hypothetical protein 30 51.90 -1 39345..40082 + 245 28867273 - PSPTO_0031 - Ser/Thr protein phosphatase family protein 31 48.81 -2 40884..41852 - 322 28867274 - PSPTO_0032 - hypothetical protein 32 47.35 -2 41852..42757 - 301 28867275 - PSPTO_0033 - ParB family protein 33 50.29 -2 42754..44310 - 518 28867276 - PSPTO_0034 - recombinase, putative 34 56.31 0 45183..46736 - 517 28867277 - PSPTO_0035 - ISPsy5, transposase 35 48.33 -2 46754..47113 - 119 28867278 - PSPTO_0036 - ISPsy5, Orf1 36 53.37 -1 47448..52358 + 1636 28867279 - PSPTO_0037 - helicase domain-containing protein 37 53.32 -1 52403..54493 + 696 28867280 - PSPTO_0038 - hypothetical protein 38 56.31 0 54971..56524 - 517 28867281 - PSPTO_0039 - ISPsy5, transposase 39 48.33 -2 56542..56901 - 119 28867282 - PSPTO_0040 - ISPsy5, Orf1 40 54.01 -1 56961..57347 + 128 28867283 - PSPTO_0041 - hypothetical protein 41 51.38 -1 58344..59906 + 520 28867284 - PSPTO_0043 - cytidine/deoxycytidylate deaminase family protein 42 54.57 0 60407..61423 - 338 28867285 hopK1 PSPTO_0044 - type III effector HopK1 43 52.83 -1 61526..61684 + 52 28867286 - PSPTO_0045 - hypothetical protein 44 54.78 0 62078..64063 + 661 28867287 - PSPTO_0046 - hypothetical protein 45 53.49 -1 64066..65970 + 634 28867288 - PSPTO_0047 - UvrD/REP helicase family protein 46 49.96 -2 67445..68611 + 388 28867289 - PSPTO_0048 - hypothetical protein 47 49.73 -2 68863..69606 + 247 28867290 - PSPTO_0049 - hypothetical protein 48 47.75 -2 69623..70954 + 443 28867291 - PSPTO_0050 - hypothetical protein 49 53.38 -1 71041..71484 + 147 28867292 - PSPTO_0051 - hypothetical protein 50 52.99 -1 71711..73480 + 589 28867293 - PSPTO_0052 - hypothetical protein 51 55.60 0 73641..75086 - 481 28867294 - PSPTO_0053 - hypothetical protein 52 56.86 0 75073..75684 - 203 28867295 - PSPTO_0054 - hypothetical protein 53 59.24 0 75949..76971 + 340 28867296 - PSPTO_0055 - ISPsy4, transposase 54 57.78 0 76968..77777 + 269 28867297 - PSPTO_0056 - transposase/IS protein 55 51.74 -1 78120..79010 - 296 28867298 - PSPTO_0057 - transposition helper protein 56 55.48 0 79007..80794 - 595 28867299 - PSPTO_0058 - transposase 57 54.11 -1 80922..81542 - 206 28867300 - PSPTO_0059 - hypothetical protein 58 58.45 0 82500..83363 + 287 28867301 hopY1 PSPTO_0061 - type III effector HopY1 59 60.40 0 83552..84859 - 435 28867302 - PSPTO_0062 - citrate transporter 60 59.65 0 85159..85557 + 132 28867303 - PSPTO_0063 - hypothetical protein 61 60.80 0 85784..87181 - 465 28867304 - PSPTO_0064 - hypothetical protein 62 61.71 0 87268..89343 - 691 28867305 recG PSPTO_0065 - ATP-dependent DNA helicase RecG 63 59.42 0 89355..90278 - 307 28867306 - PSPTO_0066 - oxidative stress regulatory protein OxyR, putative 64 61.31 0 90371..91117 - 248 28867307 tonB-1 PSPTO_0067 - tonB protein 65 59.62 0 91114..91539 - 141 28867308 exbD-1 PSPTO_0068 - biopolymer transport protein ExbD 66 62.70 0 91543..92499 - 318 28867309 exbB-1 PSPTO_0069 - TonB system transport protein ExbB 67 64.19 +1 92710..93558 + 282 28867310 - PSPTO_0070 - hypothetical protein 68 58.40 0 93607..94344 - 245 28867311 - PSPTO_0071 - putative lipoprotein 69 57.22 0 94399..94779 - 126 28867312 - PSPTO_0072 - endoribonuclease L-PSP, putative 70 59.97 0 94805..96910 - 701 28867313 spoT PSPTO_0073 - guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase 71 54.55 0 96971..97234 - 87 28867314 rpoZ PSPTO_0074 - DNA-directed RNA polymerase subunit omega 72 58.76 0 97382..98026 - 214 28867315 gmk PSPTO_0075 - guanylate kinase 73 61.69 0 98040..98903 - 287 28867316 - PSPTO_0076 - hypothetical protein 74 61.13 0 99223..99945 + 240 28867317 rph PSPTO_0077 - ribonuclease PH 75 51.34 -1 99962..100333 + 123 28867318 - PSPTO_0078 - hypothetical protein 76 56.54 0 100403..101182 - 259 28867319 - PSPTO_0079 - exodeoxyribonuclease III, putative 77 60.75 0 101265..101906 + 213 28867320 pyrE PSPTO_0080 - orotate phosphoribosyltransferase 78 63.98 +1 101917..102549 + 210 28867321 - PSPTO_0081 - hypothetical protein 79 58.72 0 102801..103706 - 301 28867322 argB PSPTO_0082 - acetylglutamate kinase 80 58.66 0 103735..105132 - 465 28867323 algC PSPTO_0083 - phosphomannomutase AlgC 81 61.40 0 106375..106830 - 151 28867324 dut PSPTO_0084 - deoxyuridine 5'-triphosphate nucleotidohydrolase 82 61.86 0 106837..108084 - 415 28867325 coaBC PSPTO_0085 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 83 59.56 0 108181..108855 + 224 28867326 radC PSPTO_0086 - DNA repair protein RadC 84 59.17 0 108910..110496 - 528 28867327 - PSPTO_0087 - solute-binding family 5 protein 85 57.78 0 110557..110691 - 44 28867328 - PSPTO_0088 - hypothetical protein 86 51.71 -1 110860..111093 + 77 28867329 rpmB PSPTO_0089 - 50S ribosomal protein L28 87 43.59 -2 111105..111260 + 51 28867330 rpmG PSPTO_0090 - 50S ribosomal protein L33 88 58.74 0 111368..111733 - 121 28867331 - PSPTO_0091 - hypothetical protein 89 62.12 0 111972..113465 + 497 28867332 - PSPTO_0092 - aldehyde dehydrogenase family protein 90 51.59 -1 113528..113779 - 83 28867333 - PSPTO_0093 - hypothetical protein 91 63.71 +1 113892..115040 + 382 28867334 - PSPTO_0094 - hypothetical protein 92 61.33 0 115037..116665 - 542 28867335 - PSPTO_0095 - phospholipase D family protein 93 61.46 0 116690..118111 - 473 28867336 - PSPTO_0096 - GntR family transcriptional regulator 94 59.15 0 118233..118538 + 101 28867337 - PSPTO_0097 - hypothetical protein 95 61.42 0 118544..119857 - 437 28867338 - PSPTO_0098 - hypothetical protein 96 61.76 0 119909..120316 + 135 28867339 - PSPTO_0099 - hypothetical protein 97 58.90 0 120331..120819 - 162 28867340 lrp PSPTO_0100 - leucine-responsive regulatory protein 98 60.75 0 120976..122277 + 433 28867341 dadA PSPTO_0101 - D-amino acid dehydrogenase small subunit 99 59.04 0 122249..122602 + 117 28867342 - PSPTO_0102 - endoribonuclease L-PSP family protein 100 63.04 +1 122682..123755 + 357 28867343 dadX PSPTO_0103 - alanine racemase 58.61 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.