version 1.0
Pseudomonas syringae pv. tomato str. DC3000, complete genome - 1..6397126 5475 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3007 60.47 0 3455936..3456694 + 252 28870248 - PSPTO_3073 - short chain dehydrogenase/reductase family oxidoreductase 3008 58.60 0 3456718..3457659 - 313 28870249 - PSPTO_3074 - AraC family transcriptional regulator 3009 59.64 0 3458021..3459073 + 350 28870250 - PSPTO_3075 - aldo/keto reductase family oxidoreductase 3010 54.47 0 3459207..3459788 + 193 28870251 - PSPTO_3076 - TetR family transcriptional regulator 3011 62.05 0 3459847..3460950 + 367 28870252 - PSPTO_3077 - NADH:flavin oxidoreductase / NADH oxidase family protein 3012 52.71 -1 3461005..3461391 + 128 28870253 - PSPTO_3078 - hypothetical protein 3013 60.58 0 3461451..3462107 + 218 28870254 - PSPTO_3079 - hypothetical protein 3014 60.56 0 3462124..3463221 - 365 28870255 - PSPTO_3080 - NADH:flavin oxidoreductase/NADH oxidase family protein 3015 60.39 0 3463360..3464283 + 307 28870256 - PSPTO_3081 - LysR family transcriptional regulator 3016 58.76 0 3464325..3465197 - 290 28870257 - PSPTO_3082 - glutamine/glutamate ABC transporter, periplasmic glutamine/glutamate-binding protein 3017 59.71 0 3465194..3465955 - 253 28870258 - PSPTO_3083 - glutamine/glutamate ABC transporter, ATP-binding protein 3018 60.15 0 3465952..3466611 - 219 28870259 - PSPTO_3084 - glutamine/glutamate ABC transporter, permease protein 3019 58.26 0 3466592..3467257 - 221 28870260 - PSPTO_3085 - glutamine/glutamate ABC transporter, permease protein 3020 57.90 0 3467721..3468359 + 212 28870261 - PSPTO_3086 - transcriptional regulator, putative 3021 59.15 0 3468470..3470131 - 553 28870262 hopAB2 PSPTO_3087 - type III effector HopAB2 3022 61.08 0 3470485..3472113 + 542 28870263 - PSPTO_3088 - nickel ABC transporter, periplasmic nickel-binding protein, putative 3023 62.88 +1 3472110..3473060 + 316 28870264 nikB PSPTO_3089 - nickel ABC transporter, permease protein 3024 65.90 +1 3473065..3473982 + 305 28870265 - PSPTO_3090 - nickel ABC transporter, permease protein, putative 3025 62.90 +1 3473979..3475625 + 548 28870266 - PSPTO_3091 - nickel ABC transporter, ATP-binding protein, putative 3026 59.98 0 3475664..3476500 + 278 28870267 - PSPTO_3092 - hypothetical protein 3027 51.15 -1 3476674..3477150 + 158 28870268 - PSPTO_3093 - hypothetical protein 3028 62.99 +1 3477551..3478012 + 153 28870269 - PSPTO_3094 - putative lipoprotein 3029 59.07 0 3480059..3480703 + 214 28870270 - PSPTO_3096 - hypothetical protein 3030 58.32 0 3480906..3482834 - 642 28870271 - PSPTO_3098 - methyl-accepting chemotaxis protein 3031 62.25 0 3483136..3484380 + 414 28870272 mexE PSPTO_3099 - multidrug efflux RND membrane fusion protein MexE 3032 60.28 0 3484393..3487584 + 1063 28870273 mexF PSPTO_3100 - multidrug efflux RND transporter MexF 3033 63.66 +1 3487584..3488981 + 465 28870274 - PSPTO_3101 - outer membrane efflux protein 3034 61.71 0 3489064..3490233 + 389 28870275 - PSPTO_3102 - TPR domain-containing protein 3035 56.20 0 3490721..3491083 + 120 28870276 - PSPTO_3103 - transcriptional regulator, putative 3036 58.50 0 3491068..3491214 + 48 28870277 - PSPTO_3104 - hypothetical protein 3037 57.88 0 3491560..3492276 - 238 28870278 - PSPTO_3105 - hypothetical protein 3038 58.24 0 3492265..3492786 + 173 28870279 gloA PSPTO_3106 - lactoylglutathione lyase 3039 60.08 0 3492875..3494437 - 520 28870280 ahpF PSPTO_3107 - alkyl hydroperoxide reductase, subunit F 3040 56.56 0 3494562..3495125 - 187 28870281 ahpC PSPTO_3108 - alkyl hydroperoxide reductase, subunit C 3041 60.62 0 3495236..3496195 - 319 28870282 - PSPTO_3109 - cointegrate resolution protein S 3042 58.46 0 3496381..3497391 + 336 28870283 - PSPTO_3110 - cointegrate resolution protein T 3043 60.06 0 3497402..3498673 - 423 28870284 - PSPTO_3111 - sensory box histidine kinase 3044 58.28 0 3498764..3500122 - 452 28870285 gor-1 PSPTO_3112 - glutathione reductase 3045 55.24 0 3500226..3501065 - 279 28870286 galU PSPTO_3113 - UTP-glucose-1-phosphate uridylyltransferase 3046 59.93 0 3501396..3501677 + 93 28870287 - PSPTO_3114 - putative lipoprotein 3047 55.34 0 3501750..3502208 - 152 28870288 - PSPTO_3115 - hypothetical protein 3048 55.88 0 3502271..3502576 + 101 28870289 - PSPTO_3116 - hypothetical protein 3049 56.83 0 3502591..3502773 + 60 28870290 - PSPTO_3117 - hypothetical protein 3050 62.30 0 3502831..3503517 + 228 28870291 alkB PSPTO_3118 - DNA alkylation damage repair protein AlkB 3051 60.34 0 3503526..3505343 - 605 28870292 - PSPTO_3119 - glycosy hydrolase family protein 3052 60.32 0 3505396..3506214 - 272 28870293 - PSPTO_3120 - Cof-like hydrolase family protein 3053 59.03 0 3506207..3507739 - 510 28870294 zwf-2 PSPTO_3121 - glucose-6-phosphate 1-dehydrogenase 3054 60.82 0 3507739..3508713 - 324 28870295 gnd PSPTO_3122 - 6-phosphogluconate dehydrogenase-like protein 3055 53.45 -1 3509027..3509200 + 57 28870296 - PSPTO_3123 - hypothetical protein 3056 54.07 -1 3509337..3509828 - 163 28870297 - PSPTO_3124 - acetyltransferase 3057 60.07 0 3510581..3512035 + 484 28870298 glgA PSPTO_3125 - glycogen synthase 3058 60.50 0 3512055..3513869 + 604 28870299 - PSPTO_3126 - alpha-amylase family protein 3059 61.95 0 3513859..3515937 + 692 28870300 malQ PSPTO_3127 - 4-alpha-glucanotransferase 3060 60.31 0 3515934..3518717 + 927 28870301 - PSPTO_3128 - glycosy hydrolase family protein 3061 60.14 0 3518735..3519148 + 137 28870302 - PSPTO_3129 - hypothetical protein 3062 58.93 0 3519308..3521491 + 727 28870303 glgX PSPTO_3130 - glycogen operon protein GlgX 3063 64.10 +1 3521488..3522501 + 337 28870304 - PSPTO_3131 - hypothetical protein 3064 63.82 +1 3522528..3523301 + 257 28870305 - PSPTO_3132 - hypothetical protein 3065 61.72 0 3523298..3523924 + 208 28870306 - PSPTO_3133 - methyltransferase, putative 3066 61.01 0 3523893..3524546 + 217 28870307 - PSPTO_3134 - glycosyl transferase, group 2 family protein 3067 62.75 0 3524581..3525600 - 339 28870308 - PSPTO_3135 - hypothetical protein 3068 59.44 0 3525969..3526577 - 202 28870309 - PSPTO_3136 - azoreductase 3069 59.06 0 3526652..3527611 - 319 28870310 - PSPTO_3137 - LysR family transcriptional regulator 3070 62.63 0 3527691..3528482 - 263 28870311 - PSPTO_3138 - 3-oxoadipate enol-lactone hydrolase 3071 59.13 0 3528610..3528954 + 114 28870312 - PSPTO_3139 - hypothetical protein 3072 62.00 0 3528949..3529419 - 156 28870313 - PSPTO_3140 - hypothetical protein 3073 58.97 0 3529416..3530246 - 276 28870314 - PSPTO_3141 - undecaprenyl pyrophosphate phosphatase 3074 59.22 0 3530526..3531089 + 187 28870315 - PSPTO_3142 - nicotinamide mononucleotide transporter PnuC, putative 3075 61.64 0 3531086..3531622 + 178 28870316 - PSPTO_3143 - nicotinamide-nucleotide adenylyltransferase, putative 3076 60.23 0 3531672..3532976 - 434 28870317 - PSPTO_3144 - sigma-54 dependent transcriptional regulator 3077 56.44 0 3533269..3533571 + 100 28870318 - PSPTO_3145 - hypothetical protein 3078 53.27 -1 3534233..3535255 - 340 28870319 - PSPTO_3146 - ISPsy7, transposase 3079 62.58 0 3535672..3536283 - 203 28870320 - PSPTO_3147 - hypothetical protein 3080 63.46 +1 3536337..3537365 - 342 28870321 - PSPTO_3148 - magnesium chelatase, subunit ChII, putative 3081 63.80 +1 3537365..3541129 - 1254 28870322 - PSPTO_3149 - cobaltochelatase 3082 61.69 0 3541133..3542197 - 354 28870323 - PSPTO_3150 - cobalamin synthesis protein/P47K family protein 3083 63.98 +1 3542904..3543089 + 61 28870324 - PSPTO_3151 - hypothetical protein 3084 63.76 +1 3543110..3543832 + 240 28870325 - PSPTO_3152 - hypothetical protein 3085 59.73 0 3544307..3545056 + 249 28870326 cobM PSPTO_3154 - precorrin-4 C11-methyltransferase 3086 60.15 0 3545226..3548708 - 1160 28870327 - PSPTO_3155 - indolepyruvate ferredoxin oxidoreductase 3087 60.26 0 3548894..3549361 + 155 28870328 - PSPTO_3156 - AsnC family transcriptional regulator 3088 60.19 0 3549774..3550406 + 210 28870329 - PSPTO_3157 - hypothetical protein 3089 62.17 0 3551698..3552942 - 414 28870330 - PSPTO_3159 - mutlidrug resistance protein, putative 3090 62.45 0 3553049..3553594 + 181 28870331 - PSPTO_3160 - transcriptional regulator, putative 3091 63.01 +1 3553635..3554975 + 446 28870332 - PSPTO_3161 - protein kinase, putative 3092 60.57 0 3554994..3555698 - 234 28870333 - PSPTO_3162 - hypothetical protein 3093 60.47 0 3555900..3556673 - 257 28870334 - PSPTO_3163 - enoyl-CoA hydratase/isomerase family protein 3094 63.28 +1 3556756..3557964 - 402 28870335 phbA-2 PSPTO_3164 - acetyl-CoA acetyltransferase 3095 62.71 0 3558140..3558619 + 159 28870336 - PSPTO_3165 - putative lipoprotein 3096 58.46 0 3558705..3559667 + 320 28870337 - PSPTO_3166 - hypothetical protein 3097 60.46 0 3559693..3559998 - 101 28870338 - PSPTO_3167 - hypothetical protein 3098 38.30 -2 3560098..3560238 + 46 28870339 - PSPTO_3168 - hypothetical protein 3099 61.74 0 3560546..3560809 + 87 28870340 - PSPTO_3169 - hypothetical protein 3100 60.17 0 3560854..3563547 + 897 28870341 - PSPTO_3170 - glycosy hydrolase family protein 3101 58.22 0 3563563..3564213 - 216 28870342 - PSPTO_3171 - TetR family transcriptional regulator 3102 61.38 0 3564236..3565597 - 453 28870343 - PSPTO_3172 - hypothetical protein 3103 59.61 0 3565701..3565955 - 84 28870344 - PSPTO_3173 - hypothetical protein 3104 56.29 0 3566109..3566426 + 105 28870345 - PSPTO_3174 - hypothetical protein 3105 61.82 0 3566539..3566868 - 109 28870346 - PSPTO_3175 - hypothetical protein 3106 58.73 0 3567159..3568229 + 356 28870347 - PSPTO_3176 - thermolysin metallopeptidase, putative 58.61 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0