version 1.0
Pseudomonas syringae pv. tomato str. DC3000, complete genome - 1..6397126 5475 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2971 61.99 0 3413324..3415609 - 761 28870212 - PSPTO_3036 - hypothetical protein 2972 58.21 0 3415757..3417163 - 468 28870213 - PSPTO_3037 - transcriptional regulator, putative 2973 59.75 0 3417166..3418668 - 500 28870214 - PSPTO_3038 - hypothetical protein 2974 61.78 0 3419246..3420268 - 340 28870215 - PSPTO_3039 - alcohol dehydrogenase, zinc-containing 2975 62.84 +1 3420579..3421493 + 304 28870216 - PSPTO_3040 - LysR family transcriptional regulator 2976 46.86 -2 3421941..3422894 - 317 28870217 - PSPTO_3041 - hypothetical protein 2977 50.68 -1 3423692..3424648 - 318 28870218 - PSPTO_3043 - 5'-nucleotidase, putative 2978 56.62 0 3424661..3425506 - 281 28870219 - PSPTO_3044 - ISPsy12, transposase OrfB 2979 58.20 0 3425515..3425703 - 62 28870220 - PSPTO_3045 - ISPsy12, transposase OrfA 2980 59.48 0 3425886..3427889 - 667 28870221 - PSPTO_3046 - sigma-54 dependent transcriptional regulator 2981 62.95 +1 3428075..3429097 + 340 28870222 - PSPTO_3047 - myo-inositol 2-dehydrogenase, putative 2982 59.57 0 3429094..3429882 + 262 28870223 - PSPTO_3048 - hypothetical protein 2983 57.39 0 3429981..3430907 + 308 28870224 - PSPTO_3049 - sugar ABC transporter, periplasmic sugar-binding, putative 2984 56.79 0 3431400..3432371 - 323 28870225 - PSPTO_3050 - AraC family transcriptional regulator 2985 60.11 0 3432613..3433146 + 177 28870226 - PSPTO_3051 - 2,4'-dihydroxyacetophenone dioxygenase 2986 60.87 0 3433170..3434411 + 413 28870227 - PSPTO_3052 - major facilitator family transporter 2987 58.01 0 3434473..3435234 + 253 28870228 - PSPTO_3053 - hypothetical protein 2988 60.79 0 3435263..3435994 + 243 28870229 - PSPTO_3054 - short chain dehydrogenase/reductase family oxidoreductase 2989 53.33 -1 3436113..3436262 - 49 28870230 - PSPTO_3055 - hypothetical protein 2990 59.52 0 3436246..3437280 - 344 28870231 - PSPTO_3056 - AraC family transcriptional regulator 2991 58.39 0 3437310..3438662 - 450 28870232 - PSPTO_3057 - MmgE/PrpD family protein 2992 55.73 0 3438739..3439716 - 325 28870233 - PSPTO_3058 - glycine betaine transporter periplasmic subunit 2993 56.52 0 3439826..3440791 - 321 28870234 - PSPTO_3059 - glycine betaine/L-proline ABC transporter, permease protein 2994 54.43 -1 3440841..3441878 - 345 28870235 - PSPTO_3060 - glycine betaine/L-proline ABC transporter, ATP-binding protein 2995 57.03 0 3442333..3443256 + 307 28870236 - PSPTO_3061 - LysR family transcriptional regulator 2996 56.35 0 3443659..3444909 + 416 28870237 - PSPTO_3062 - Rieske family iron-sulfur cluster-binding protein 2997 56.03 0 3445128..3446039 + 303 28870238 - PSPTO_3063 - dihydrodipicolinate synthase, putative 2998 58.23 0 3446032..3447549 + 505 28870239 - PSPTO_3064 - aldehyde dehydrogenase family protein 2999 58.87 0 3447546..3448892 + 448 28870240 - PSPTO_3065 - hypothetical protein 3000 54.70 0 3448873..3449457 + 194 28870241 - PSPTO_3066 - membrane protein 3001 59.02 0 3449676..3450368 + 230 28870242 - PSPTO_3067 - hypothetical protein 3002 61.08 0 3450465..3451592 - 375 28870243 - PSPTO_3068 - major facilitator family transporter 3003 59.33 0 3451778..3452404 + 208 28870244 - PSPTO_3069 - TetR family transcriptional regulator 3004 55.04 0 3452473..3452928 + 151 28870245 - PSPTO_3070 - acetyltransferase 3005 61.08 0 3453003..3454862 + 619 28870246 - PSPTO_3071 - ABC transporter, ATP-binding/permease protein 3006 59.89 0 3454877..3455776 - 299 28870247 - PSPTO_3072 - AraC family transcriptional regulator 3007 60.47 0 3455936..3456694 + 252 28870248 - PSPTO_3073 - short chain dehydrogenase/reductase family oxidoreductase 3008 58.60 0 3456718..3457659 - 313 28870249 - PSPTO_3074 - AraC family transcriptional regulator 3009 59.64 0 3458021..3459073 + 350 28870250 - PSPTO_3075 - aldo/keto reductase family oxidoreductase 3010 54.47 0 3459207..3459788 + 193 28870251 - PSPTO_3076 - TetR family transcriptional regulator 3011 62.05 0 3459847..3460950 + 367 28870252 - PSPTO_3077 - NADH:flavin oxidoreductase / NADH oxidase family protein 3012 52.71 -1 3461005..3461391 + 128 28870253 - PSPTO_3078 - hypothetical protein 3013 60.58 0 3461451..3462107 + 218 28870254 - PSPTO_3079 - hypothetical protein 3014 60.56 0 3462124..3463221 - 365 28870255 - PSPTO_3080 - NADH:flavin oxidoreductase/NADH oxidase family protein 3015 60.39 0 3463360..3464283 + 307 28870256 - PSPTO_3081 - LysR family transcriptional regulator 3016 58.76 0 3464325..3465197 - 290 28870257 - PSPTO_3082 - glutamine/glutamate ABC transporter, periplasmic glutamine/glutamate-binding protein 3017 59.71 0 3465194..3465955 - 253 28870258 - PSPTO_3083 - glutamine/glutamate ABC transporter, ATP-binding protein 3018 60.15 0 3465952..3466611 - 219 28870259 - PSPTO_3084 - glutamine/glutamate ABC transporter, permease protein 3019 58.26 0 3466592..3467257 - 221 28870260 - PSPTO_3085 - glutamine/glutamate ABC transporter, permease protein 3020 57.90 0 3467721..3468359 + 212 28870261 - PSPTO_3086 - transcriptional regulator, putative 3021 59.15 0 3468470..3470131 - 553 28870262 hopAB2 PSPTO_3087 - type III effector HopAB2 3022 61.08 0 3470485..3472113 + 542 28870263 - PSPTO_3088 - nickel ABC transporter, periplasmic nickel-binding protein, putative 3023 62.88 +1 3472110..3473060 + 316 28870264 nikB PSPTO_3089 - nickel ABC transporter, permease protein 3024 65.90 +1 3473065..3473982 + 305 28870265 - PSPTO_3090 - nickel ABC transporter, permease protein, putative 3025 62.90 +1 3473979..3475625 + 548 28870266 - PSPTO_3091 - nickel ABC transporter, ATP-binding protein, putative 3026 59.98 0 3475664..3476500 + 278 28870267 - PSPTO_3092 - hypothetical protein 3027 51.15 -1 3476674..3477150 + 158 28870268 - PSPTO_3093 - hypothetical protein 3028 62.99 +1 3477551..3478012 + 153 28870269 - PSPTO_3094 - putative lipoprotein 3029 59.07 0 3480059..3480703 + 214 28870270 - PSPTO_3096 - hypothetical protein 3030 58.32 0 3480906..3482834 - 642 28870271 - PSPTO_3098 - methyl-accepting chemotaxis protein 3031 62.25 0 3483136..3484380 + 414 28870272 mexE PSPTO_3099 - multidrug efflux RND membrane fusion protein MexE 3032 60.28 0 3484393..3487584 + 1063 28870273 mexF PSPTO_3100 - multidrug efflux RND transporter MexF 3033 63.66 +1 3487584..3488981 + 465 28870274 - PSPTO_3101 - outer membrane efflux protein 3034 61.71 0 3489064..3490233 + 389 28870275 - PSPTO_3102 - TPR domain-containing protein 3035 56.20 0 3490721..3491083 + 120 28870276 - PSPTO_3103 - transcriptional regulator, putative 3036 58.50 0 3491068..3491214 + 48 28870277 - PSPTO_3104 - hypothetical protein 3037 57.88 0 3491560..3492276 - 238 28870278 - PSPTO_3105 - hypothetical protein 3038 58.24 0 3492265..3492786 + 173 28870279 gloA PSPTO_3106 - lactoylglutathione lyase 3039 60.08 0 3492875..3494437 - 520 28870280 ahpF PSPTO_3107 - alkyl hydroperoxide reductase, subunit F 3040 56.56 0 3494562..3495125 - 187 28870281 ahpC PSPTO_3108 - alkyl hydroperoxide reductase, subunit C 3041 60.62 0 3495236..3496195 - 319 28870282 - PSPTO_3109 - cointegrate resolution protein S 3042 58.46 0 3496381..3497391 + 336 28870283 - PSPTO_3110 - cointegrate resolution protein T 3043 60.06 0 3497402..3498673 - 423 28870284 - PSPTO_3111 - sensory box histidine kinase 3044 58.28 0 3498764..3500122 - 452 28870285 gor-1 PSPTO_3112 - glutathione reductase 3045 55.24 0 3500226..3501065 - 279 28870286 galU PSPTO_3113 - UTP-glucose-1-phosphate uridylyltransferase 3046 59.93 0 3501396..3501677 + 93 28870287 - PSPTO_3114 - putative lipoprotein 3047 55.34 0 3501750..3502208 - 152 28870288 - PSPTO_3115 - hypothetical protein 3048 55.88 0 3502271..3502576 + 101 28870289 - PSPTO_3116 - hypothetical protein 3049 56.83 0 3502591..3502773 + 60 28870290 - PSPTO_3117 - hypothetical protein 3050 62.30 0 3502831..3503517 + 228 28870291 alkB PSPTO_3118 - DNA alkylation damage repair protein AlkB 3051 60.34 0 3503526..3505343 - 605 28870292 - PSPTO_3119 - glycosy hydrolase family protein 3052 60.32 0 3505396..3506214 - 272 28870293 - PSPTO_3120 - Cof-like hydrolase family protein 3053 59.03 0 3506207..3507739 - 510 28870294 zwf-2 PSPTO_3121 - glucose-6-phosphate 1-dehydrogenase 3054 60.82 0 3507739..3508713 - 324 28870295 gnd PSPTO_3122 - 6-phosphogluconate dehydrogenase-like protein 3055 53.45 -1 3509027..3509200 + 57 28870296 - PSPTO_3123 - hypothetical protein 3056 54.07 -1 3509337..3509828 - 163 28870297 - PSPTO_3124 - acetyltransferase 3057 60.07 0 3510581..3512035 + 484 28870298 glgA PSPTO_3125 - glycogen synthase 3058 60.50 0 3512055..3513869 + 604 28870299 - PSPTO_3126 - alpha-amylase family protein 3059 61.95 0 3513859..3515937 + 692 28870300 malQ PSPTO_3127 - 4-alpha-glucanotransferase 3060 60.31 0 3515934..3518717 + 927 28870301 - PSPTO_3128 - glycosy hydrolase family protein 3061 60.14 0 3518735..3519148 + 137 28870302 - PSPTO_3129 - hypothetical protein 3062 58.93 0 3519308..3521491 + 727 28870303 glgX PSPTO_3130 - glycogen operon protein GlgX 3063 64.10 +1 3521488..3522501 + 337 28870304 - PSPTO_3131 - hypothetical protein 3064 63.82 +1 3522528..3523301 + 257 28870305 - PSPTO_3132 - hypothetical protein 3065 61.72 0 3523298..3523924 + 208 28870306 - PSPTO_3133 - methyltransferase, putative 3066 61.01 0 3523893..3524546 + 217 28870307 - PSPTO_3134 - glycosyl transferase, group 2 family protein 3067 62.75 0 3524581..3525600 - 339 28870308 - PSPTO_3135 - hypothetical protein 3068 59.44 0 3525969..3526577 - 202 28870309 - PSPTO_3136 - azoreductase 3069 59.06 0 3526652..3527611 - 319 28870310 - PSPTO_3137 - LysR family transcriptional regulator 3070 62.63 0 3527691..3528482 - 263 28870311 - PSPTO_3138 - 3-oxoadipate enol-lactone hydrolase 58.61 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
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