version 1.0
Pseudomonas syringae pv. tomato str. DC3000, complete genome - 1..6397126 5475 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2584 59.09 0 2929175..2930323 - 382 28869825 galM PSPTO_2636 - aldose 1-epimerase 2585 63.23 +1 2930623..2931495 + 290 28869826 - PSPTO_2637 - senescence marker protein-30 family protein 2586 57.00 0 2931657..2932670 + 337 28869827 abP PSPTO_2638 - L-arabinose ABC transporter, periplasmic L-arabinose-binding protein 2587 60.43 0 2932726..2934249 + 507 28869828 - PSPTO_2639 - L-arabinose transporter ATP-binding protein 2588 58.38 0 2934266..2935255 + 329 28869829 araH PSPTO_2640 - L-arabinose transporter permease protein 2589 62.04 0 2935266..2935373 + 35 28869830 - PSPTO_2641 - putative lipoprotein 2590 60.03 0 2935352..2936602 - 416 28869831 - PSPTO_2642 - sensor histidine kinase 2591 60.26 0 2936674..2937375 - 233 28869832 - PSPTO_2643 - DNA-binding response regulator 2592 58.21 0 2937426..2938205 - 259 28869833 - PSPTO_2644 - MltA-interacting protein 2593 61.82 0 2938265..2939854 - 529 28869834 - PSPTO_2645 - hypothetical protein 2594 61.74 0 2940161..2940871 + 236 28869835 - PSPTO_2646 - TetR family transcriptional regulator 2595 56.95 0 2940935..2941675 + 246 28869836 - PSPTO_2647 - hypothetical protein 2596 56.84 0 2941675..2942142 + 155 28869837 - PSPTO_2648 - hypothetical protein 2597 61.27 0 2942151..2943113 + 320 28869838 - PSPTO_2649 - hypothetical protein 2598 56.79 0 2943186..2943347 + 53 28869839 - PSPTO_2650 - hypothetical protein 2599 59.52 0 2943337..2943714 - 125 28869840 - PSPTO_2651 - response regulator 2600 59.39 0 2943711..2946692 - 993 28869841 - PSPTO_2652 - bacteriophytochrome, putative 2601 60.62 0 2949573..2950250 + 225 28869842 - PSPTO_2654 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 2602 63.92 +1 2950250..2951233 + 327 28869843 - PSPTO_2655 - oxidoreductase, molybdopterin-binding subunit, putative 2603 62.60 0 2951420..2953459 + 679 28869844 - PSPTO_2656 - aldehyde oxidase and xanthine dehydrogenase family protein 2604 64.60 +1 2953462..2954430 + 322 28869845 - PSPTO_2657 - xanthine dehydrogenase accessory factor XdhC, putative 2605 63.47 +1 2954411..2955004 - 197 28869846 - PSPTO_2658 - hypothetical protein 2606 57.78 0 2955177..2955761 + 194 28869847 - PSPTO_2659 - NAD(P)H-flavin oxidoreductase 2607 60.63 0 2956044..2957435 - 463 28869848 - PSPTO_2660 - aldehyde dehydrogenase family protein 2608 62.57 0 2957538..2958416 + 292 28869849 - PSPTO_2661 - LysR family transcriptional regulator 2609 61.74 0 2958422..2959516 - 364 28869850 - PSPTO_2662 - tartrate dehydrogenase 2610 61.59 0 2959629..2960534 + 301 28869851 - PSPTO_2663 - LysR family transcriptional regulator 2611 61.04 0 2960581..2961735 - 384 28869852 - PSPTO_2664 - spermidine/putrescine ABC transporter, ATP-binding protein 2612 61.03 0 2961732..2962547 - 271 28869853 - PSPTO_2665 - spermidine/putrescine ABC transporter, permease protein, putative 2613 61.17 0 2962554..2963408 - 284 28869854 - PSPTO_2666 - spermidine/putrescine ABC transporter, permease protein, putative 2614 60.53 0 2963495..2964520 - 341 28869855 - PSPTO_2667 - spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein, putative 2615 62.88 +1 2964810..2965919 - 369 28869856 ribBA-2 PSPTO_2668 - bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein 2616 58.08 0 2966014..2966304 + 96 28869857 - PSPTO_2669 - hypothetical protein 2617 59.93 0 2966404..2966967 - 187 28869858 - PSPTO_2670 - mutT/nudix family protein 2618 61.49 0 2966969..2967721 - 250 28869859 - PSPTO_2671 - GntR family transcriptional regulator 2619 59.47 0 2967912..2968397 - 161 28869860 - PSPTO_2672 - NAD(P)H-flavin oxidoreductase 2620 63.36 +1 2968411..2969892 - 493 28869861 - PSPTO_2673 - aldehyde dehydrogenase family protein 2621 63.37 +1 2969889..2970737 - 282 28869862 - PSPTO_2674 - 3-oxoadipate enol-lactone hydrolase family protein 2622 57.87 0 2970772..2971362 - 196 28869863 - PSPTO_2675 - hypothetical protein 2623 60.44 0 2971649..2972788 + 379 28869864 fdhA-2 PSPTO_2676 - glutathione-independent formaldehyde dehydrogenase 2624 59.81 0 2972883..2973743 + 286 28869865 - PSPTO_2677 - short chain dehydrogenase/reductase family oxidoreductase 2625 59.59 0 2973945..2974919 + 324 28869866 hopP1 PSPTO_2678 - type III helper protein HopP1 2626 60.16 0 2974894..2975016 + 40 28869867 - PSPTO_2679 - hypothetical protein 2627 61.71 0 2975356..2976786 + 476 28869868 gabD-3 PSPTO_2680 - succinate-semialdehyde dehydrogenase 2628 56.73 0 2976862..2977797 - 311 28869869 pbpG PSPTO_2681 - D-alanyl-D-alanine endopeptidase 2629 59.33 0 2978050..2978649 - 199 28869870 - PSPTO_2682 - hypothetical protein 2630 64.48 +1 2978728..2978910 - 60 28869871 - PSPTO_2683 - hypothetical protein 2631 64.43 +1 2979083..2979439 - 118 28869872 - PSPTO_2684 - hypothetical protein 2632 59.97 0 2979641..2980417 + 258 28869873 - PSPTO_2685 - shikimate 5-dehydrogenase 2633 63.21 +1 2980482..2981147 - 221 28869874 - PSPTO_2686 - hypothetical protein 2634 57.80 0 2981249..2981812 + 187 28869875 - PSPTO_2687 - hypothetical protein 2635 62.42 0 2982076..2983230 + 384 28869876 - PSPTO_2688 - major facilitator family transporter 2636 59.58 0 2983227..2984129 - 300 28869877 - PSPTO_2689 - LysR family transcriptional regulator 2637 48.97 -2 2984262..2984504 + 80 28869878 - PSPTO_2690 - putative lipoprotein 2638 55.64 0 2984539..2985300 + 253 28869879 - PSPTO_2691 - TerC family membrane protein 2639 59.44 0 2985402..2985581 - 59 28869880 - PSPTO_2692 - hypothetical protein 2640 60.34 0 2985801..2986496 + 231 28869881 - PSPTO_2693 - hypothetical protein 2641 60.75 0 2986568..2987851 - 427 28869882 - PSPTO_2694 - hypothetical protein 2642 60.83 0 2988478..2989539 - 353 28869883 - PSPTO_2695 - hypothetical protein 2643 55.56 0 2989651..2990037 - 128 28869884 - PSPTO_2696 - mutT/nudix family protein 2644 58.77 0 2990361..2991437 - 358 28869885 - PSPTO_2697 - oxidoreductase, zinc-binding 2645 59.37 0 2991704..2992018 + 104 28869886 - PSPTO_2698 - hypothetical protein 2646 60.08 0 2992163..2994622 + 819 28869887 - PSPTO_2699 - GAF domain/GGDEF domain/EAL domain-containing protein 2647 56.76 0 2994802..2995356 + 184 28869888 - PSPTO_2700 - hypothetical protein 2648 61.87 0 2995844..2996782 - 312 28869889 - PSPTO_2701 - fructokinase 2649 63.29 +1 2996807..2998288 - 493 28869890 xylB PSPTO_2702 - xylulokinase 2650 59.99 0 2998299..2999780 - 493 28869891 uxuB PSPTO_2703 - D-mannonate oxidoreductase 2651 58.15 0 3000944..3001777 - 277 28869892 - PSPTO_2705 - mannitol ABC transporter, permease protein 2652 58.41 0 3001788..3002720 - 310 28869893 - PSPTO_2706 - mannitol ABC transporter, permease protein 2653 58.88 0 3002808..3004130 - 440 28869894 - PSPTO_2707 - mannitol ABC transporter, periplasmic mannitol-binding protein 2654 55.41 0 3004371..3005276 - 301 28869895 mltR PSPTO_2708 - transcriptional activator MltR 2655 61.07 0 3005404..3006189 + 261 28869896 - PSPTO_2709 - precorrin 6A synthase 2656 62.03 0 3006174..3007382 - 402 28869897 - PSPTO_2710 - hypothetical protein 2657 57.78 0 3007489..3007848 - 119 28869898 - PSPTO_2711 - response regulator 2658 59.81 0 3008195..3011707 + 1170 28869899 - PSPTO_2712 - sensor histidine kinase/response regulator 2659 55.48 0 3011736..3012602 + 288 28869900 - PSPTO_2713 - chemotaxis protein methyltransferase CheR, putative 2660 57.07 0 3012599..3013213 + 204 28869901 - PSPTO_2714 - protein-glutamate methylesterase, putative 2661 57.87 0 3013207..3014388 + 393 28869902 - PSPTO_2715 - sensor histidine kinase/response regulator 2662 55.56 0 3014480..3014857 + 125 28869903 - PSPTO_2716 - response regulator 2663 60.61 0 3014885..3016915 - 676 28869904 - PSPTO_2717 - sensory box histidine kinase/response regulator 2664 57.98 0 3016912..3018396 - 494 28869905 - PSPTO_2718 - hypothetical protein 2665 58.43 0 3018617..3019429 + 270 28869906 - PSPTO_2719 - enoyl-CoA hydratase 2666 60.81 0 3019482..3020318 + 278 28869907 - PSPTO_2720 - NADH pyrophosphatase 2667 63.21 +1 3020286..3021065 - 259 28869908 - PSPTO_2721 - hypothetical protein 2668 64.49 +1 3021171..3022319 - 382 28869909 - PSPTO_2722 - Gfo/Idh/MocA family oxidoreductase 2669 57.42 0 3022420..3023187 - 255 28869910 - PSPTO_2723 - short chain dehydrogenase 2670 59.08 0 3023215..3024282 - 355 28869911 - PSPTO_2724 - hypothetical protein 2671 55.97 0 3024485..3024802 - 105 28869912 - PSPTO_2725 - SCP-2 sterol transfer family protein 2672 60.90 0 3024858..3025568 - 236 28869913 - PSPTO_2726 - hypothetical protein 2673 48.96 -2 3025629..3025724 - 31 28869914 - PSPTO_2727 - hypothetical protein 2674 58.55 0 3025774..3026796 + 340 28869915 - PSPTO_2728 - putative periplasmic protease 2675 58.18 0 3027056..3027550 - 164 28869916 - PSPTO_2729 - hypothetical protein 2676 60.76 0 3027534..3029192 - 552 28869917 cysI PSPTO_2730 - sulphite reductase 2677 60.71 0 3029769..3030842 + 357 28869918 - PSPTO_2731 - sugar-binding domain-containing protein 2678 60.22 0 3030852..3034571 - 1239 28869919 metH PSPTO_2732 - B12-dependent methionine synthase 2679 59.88 0 3034729..3037041 + 770 28869920 cti PSPTO_2733 - esterified fatty acid cis/trans isomerase 2680 56.21 0 3037217..3038239 + 340 28869921 - PSPTO_2734 - acetyltransferase family protein 2681 57.74 0 3038310..3038903 + 197 28869922 yhgI PSPTO_2735 - yhgI protein 2682 62.26 0 3039164..3041113 - 649 28869923 - PSPTO_2736 - biotin carboxylase/biotin-containing subunit 2683 61.84 0 3041110..3041958 - 282 28869924 - PSPTO_2737 - gamma-carboxygeranoyl-CoA hydratase 58.61 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0