IslandPathversion 1.0

IslandPath Analysis: Pseudomonas syringae pv. tomato str. DC3000



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 58.61 STD DEV: 4.14
Pseudomonas syringae pv. tomato str. DC3000, complete genome - 1..6397126
5475 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2499	 56.80	0	2815564..2817093	+	509	28869740	-	PSPTO_2549	-	sigma-54 dependent transcriptional regulator
2500	 52.48	-1	2817143..2817283	+	46	28869741	-	PSPTO_2550	-	hypothetical protein
2501	 53.86	-1	2817337..2817828	+	163	28869742	-	PSPTO_2551	-	hypothetical protein
2502	 56.58	0	2817858..2819156	+	432	28869743	-	PSPTO_2552	-	hypothetical protein
2503	 55.67	0	2819156..2820028	+	290	28869744	-	PSPTO_2553	-	hypothetical protein
2504	 57.66	0	2820042..2823548	+	1168	28869745	-	PSPTO_2554	-	hypothetical protein
2505	 60.91	0	2823826..2824659	+	277	28869746	phnC	PSPTO_2555	-	phosphonates ABC transporter, ATP-binding protein
2506	 56.78	0	2824697..2825707	+	336	28869747	phnD	PSPTO_2556	-	phosphonates ABC transporter, periplasmic phosphonates-binding protein
2507	 60.71	0	2825735..2826523	+	262	28869748	phnE	PSPTO_2557	-	phosphonates ABC transporter, permease protein
2508	 63.61	+1	2826562..2827281	+	239	28869749	phnF	PSPTO_2558	-	transcriptional regulator PhnF
2509	 64.73	+1	2827296..2827760	+	154	28869750	phnG	PSPTO_2559	-	phosphonate metabolism protein PhnG
2510	 62.81	+1	2827760..2828356	+	198	28869751	phnH	PSPTO_2560	-	carbon-phosphorus lyase complex subunit
2511	 63.33	+1	2828356..2829435	+	359	28869752	phnI	PSPTO_2561	-	phosphonate metabolism protein PhnI
2512	 60.02	0	2829432..2830319	+	295	28869753	phnJ	PSPTO_2562	-	phosphonate metabolism protein PhnJ
2513	 62.90	+1	2830316..2831137	+	273	28869754	-	PSPTO_2563	-	phosphonates transport ATP-binding protein
2514	 64.30	+1	2831170..2831886	+	238	28869755	-	PSPTO_2564	-	phosphonate ABC transporter, ATP-binding protein
2515	 61.08	0	2831880..2833025	+	381	28869756	-	PSPTO_2565	-	phosphonate metabolism protein PhnM
2516	 59.96	0	2833025..2833591	+	188	28869757	phnN	PSPTO_2566	-	ATP-binding protein PhnN
2517	 65.20	+1	2833582..2834331	+	249	28869758	-	PSPTO_2567	-	carbon-phosphorus lyase complex accessory protein
2518	 63.08	+1	2834486..2836852	+	788	28869759	gcd-1	PSPTO_2568	-	glucose dehydrogenase
2519	 63.52	+1	2836915..2838438	-	507	28869760	-	PSPTO_2569	-	amidase family protein
2520	 63.37	+1	2838609..2839760	-	383	28869761	-	PSPTO_2570	-	M20/M25/M40 family peptidase
2521	 64.01	+1	2839757..2841184	-	475	28869762	-	PSPTO_2571	-	hypothetical protein
2522	 62.13	0	2841181..2842194	-	337	28869763	-	PSPTO_2572	-	peptide ABC transporter, ATP-binding protein
2523	 63.57	+1	2842191..2843192	-	333	28869764	-	PSPTO_2573	-	peptide ABC transporter, ATP-binding protein
2524	 62.82	+1	2843209..2844117	-	302	28869765	-	PSPTO_2574	-	peptide ABC transporter, permease protein
2525	 62.20	0	2844126..2845043	-	305	28869766	-	PSPTO_2575	-	peptide ABC transporter, permease protein
2526	 60.68	0	2845146..2846666	-	506	28869767	-	PSPTO_2576	-	peptide ABC transporter, periplasmic peptide-binding protein
2527	 61.86	0	2846878..2847771	+	297	28869768	-	PSPTO_2577	-	LysR family transcriptional regulator
2528	 64.24	+1	2847956..2848861	+	301	28869769	-	PSPTO_2578	-	putative GTP cyclohydrolase
2529	 56.33	0	2848873..2849433	+	186	28869770	-	PSPTO_2579	-	carbonic anhydrase-related protein
2530	 58.78	0	2849485..2850651	+	388	28869771	-	PSPTO_2580	-	hypothetical protein
2531	 59.37	0	2850700..2851329	-	209	28869772	-	PSPTO_2581	-	DNA-binding protein
2532	 60.26	0	2853098..2854018	+	306	28869773	-	PSPTO_2583	-	glutamine amidotransferase, class-II protein
2533	 60.96	0	2854015..2854698	+	227	28869774	-	PSPTO_2584	-	hypothetical protein
2534	 62.94	+1	2854714..2856054	+	446	28869775	-	PSPTO_2585	-	glutamate synthase family protein
2535	 61.39	0	2856588..2857913	+	441	28869776	amt-2	PSPTO_2586	-	ammonium transporter
2536	 52.03	-1	2857952..2858074	+	40	28869777	-	PSPTO_2587	-	hypothetical protein
2537	 57.61	0	2858488..2859525	-	345	28869778	-	PSPTO_2588	-	luciferase family protein
2538	 58.33	0	2859734..2860069	-	111	28869779	-	PSPTO_2589	-	hypothetical protein
2539	 59.40	0	2860393..2861493	+	366	28869780	-	PSPTO_2590	-	luciferase family protein
2540	 59.86	0	2861816..2863402	+	528	28869781	-	PSPTO_2591	-	GGDEF domain-containing protein
2541	 61.77	0	2863432..2866575	-	1047	28869782	-	PSPTO_2592	-	AcrB/AcrD/AcrF family protein
2542	 64.34	+1	2866609..2867769	-	386	28869783	-	PSPTO_2593	-	multidrug resistance protein AcrA/AcrE family
2543	 60.72	0	2867950..2868504	+	184	28869784	nfxB	PSPTO_2594	-	transcriptional regulatory protein NfxB
2544	 63.19	+1	2868541..2869950	-	469	28869785	pchA	PSPTO_2595	-	salicylate biosynthesis isochorismate synthase
2545	 58.26	0	2869947..2870267	-	106	28869786	pchB	PSPTO_2596	-	isochorismate-pyruvate lyase
2546	 65.71	+1	2870283..2871851	-	522	28869787	irp5	PSPTO_2597	-	yersiniabactin synthetase, salycilate ligase component
2547	 63.85	+1	2871864..2872679	-	271	28869788	irp4	PSPTO_2598	-	yersiniabactin synthetase, thioesterase component
2548	 65.65	+1	2872651..2873733	-	360	28869789	irp3	PSPTO_2599	-	yersiniabactin synthetase, thiazolinyl reductase component
2549	 64.32	+1	2873730..2883251	-	3173	28869790	irp1	PSPTO_2600	-	yersiniabactin polyketide/non-ribosomal peptide synthetase
2550	 63.49	+1	2883238..2884464	-	408	28869791	-	PSPTO_2601	-	hypothetical protein
2551	 63.41	+1	2884461..2890634	-	2057	28869792	-	PSPTO_2602	-	yersiniabactin non-ribosomal peptide synthetase
2552	 62.14	0	2890695..2892440	-	581	28869793	-	PSPTO_2603	-	ABC transporter, ATP-binding/permease protein
2553	 62.51	0	2892437..2894218	-	593	28869794	-	PSPTO_2604	-	ABC transporter, ATP-binding/permease protein
2554	 60.54	0	2894373..2896430	-	685	28869795	-	PSPTO_2605	-	TonB-dependent siderophore receptor, putative
2555	 59.96	0	2896523..2897461	+	312	28869796	-	PSPTO_2606	-	AraC family transcriptional regulator
2556	 63.23	+1	2897458..2899956	-	832	28869797	-	PSPTO_2607	-	TonB-dependent siderophore receptor, putative
2557	 58.42	0	2900350..2900955	+	201	28869798	-	PSPTO_2608	-	Sco1/SenC family protein
2558	 59.30	0	2900955..2901443	+	162	28869799	-	PSPTO_2609	-	hypothetical protein
2559	 59.26	0	2901682..2902140	-	152	28869800	-	PSPTO_2610	-	phosphoesterase, putative
2560	 58.25	0	2902216..2902797	-	193	28869801	-	PSPTO_2611	-	tRNA synthetase class II family protein
2561	 59.52	0	2903125..2903628	-	167	28869802	-	PSPTO_2612	-	acetyltransferase
2562	 54.69	0	2903711..2904286	-	191	28869803	-	PSPTO_2613	-	hypothetical protein
2563	 57.74	0	2904461..2905300	+	279	28869804	-	PSPTO_2614	-	TauD/TfdA family dioxygenase
2564	 54.22	-1	2905681..2906178	-	165	28869805	-	PSPTO_2615	-	GAF domain-containing protein
2565	 58.20	0	2906392..2908293	+	633	28869806	-	PSPTO_2616	-	methyl-accepting chemotaxis protein
2566	 64.13	+1	2908370..2909275	-	301	28869807	-	PSPTO_2617	-	LysR family transcriptional regulator
2567	 62.68	0	2909379..2910581	+	400	28869808	argD-2	PSPTO_2618	-	acetylornithine aminotransferase
2568	 60.27	0	2910590..2911246	-	218	28869809	-	PSPTO_2619	-	hypothetical protein
2569	 56.24	0	2911293..2911733	-	146	28869810	-	PSPTO_2620	-	CBS domain-containing protein
2570	 61.21	0	2911958..2914321	+	787	28869811	polB	PSPTO_2621	-	DNA polymerase II
2571	 62.06	0	2914318..2915163	-	281	28869812	-	PSPTO_2622	-	Sir2 family transcriptional regulator
2572	 63.23	+1	2915330..2916172	+	280	28869813	-	PSPTO_2623	-	PhzF family phenazine biosynthesis protein
2573	 60.83	0	2916314..2917153	-	279	28869814	-	PSPTO_2624	-	hypothetical protein
2574	 63.92	+1	2918440..2919312	-	290	28869815	-	PSPTO_2626	-	LysR family transcriptional regulator
2575	 59.31	0	2919555..2920397	+	280	28869816	-	PSPTO_2627	-	amino acid ABC transporter, periplasmic amino acid-binding protein
2576	 58.64	0	2920441..2921175	+	244	28869817	-	PSPTO_2628	-	amino acid ABC transporter, permease protein
2577	 60.20	0	2921165..2921953	+	262	28869818	-	PSPTO_2629	-	amino acid ABC transporter, permease protein
2578	 61.41	0	2921940..2922776	+	278	28869819	-	PSPTO_2630	-	amino acid ABC transporter, ATP-binding protein
2579	 59.43	0	2922804..2923397	+	197	28869820	-	PSPTO_2631	-	hypothetical protein
2580	 63.52	+1	2923595..2926390	+	931	28869821	-	PSPTO_2632	-	fused rhodanese domain-containing protein/cystathionine beta-lyase
2581	 64.67	+1	2926602..2927351	+	249	28869822	-	PSPTO_2633	-	cation ABC transporter, ATP-binding protein
2582	 62.18	0	2927348..2928217	+	289	28869823	-	PSPTO_2634	-	cation ABC transporter, permease protein
2583	 58.31	0	2928229..2929125	+	298	28869824	-	PSPTO_2635	-	cation ABC transporter, periplasmic cation-binding protein
2584	 59.09	0	2929175..2930323	-	382	28869825	galM	PSPTO_2636	-	aldose 1-epimerase
2585	 63.23	+1	2930623..2931495	+	290	28869826	-	PSPTO_2637	-	senescence marker protein-30 family protein
2586	 57.00	0	2931657..2932670	+	337	28869827	abP	PSPTO_2638	-	L-arabinose ABC transporter, periplasmic L-arabinose-binding protein
2587	 60.43	0	2932726..2934249	+	507	28869828	-	PSPTO_2639	-	L-arabinose transporter ATP-binding protein
2588	 58.38	0	2934266..2935255	+	329	28869829	araH	PSPTO_2640	-	L-arabinose transporter permease protein
2589	 62.04	0	2935266..2935373	+	35	28869830	-	PSPTO_2641	-	putative lipoprotein
2590	 60.03	0	2935352..2936602	-	416	28869831	-	PSPTO_2642	-	sensor histidine kinase
2591	 60.26	0	2936674..2937375	-	233	28869832	-	PSPTO_2643	-	DNA-binding response regulator
2592	 58.21	0	2937426..2938205	-	259	28869833	-	PSPTO_2644	-	MltA-interacting protein
2593	 61.82	0	2938265..2939854	-	529	28869834	-	PSPTO_2645	-	hypothetical protein
2594	 61.74	0	2940161..2940871	+	236	28869835	-	PSPTO_2646	-	TetR family transcriptional regulator
2595	 56.95	0	2940935..2941675	+	246	28869836	-	PSPTO_2647	-	hypothetical protein
2596	 56.84	0	2941675..2942142	+	155	28869837	-	PSPTO_2648	-	hypothetical protein
2597	 61.27	0	2942151..2943113	+	320	28869838	-	PSPTO_2649	-	hypothetical protein
2598	 56.79	0	2943186..2943347	+	53	28869839	-	PSPTO_2650	-	hypothetical protein
58.61	MEAN

4.14	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.