version 1.0
Pseudomonas syringae pv. tomato str. DC3000, complete genome - 1..6397126 5475 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2350 60.27 0 2644361..2645314 - 317 28869591 - PSPTO_2395 - transcriptional regulator, putative 2351 61.42 0 2645396..2646196 - 266 28869592 - PSPTO_2396 - short chain dehydrogenase/reductase family oxidoreductase 2352 64.05 +1 2646227..2646991 - 254 28869593 - PSPTO_2397 - short chain dehydrogenase 2353 63.14 +1 2647023..2648552 - 509 28869594 rbsA-2 PSPTO_2398 - ribose ABC transporter, ATP-binding protein 2354 61.52 0 2648568..2649500 - 310 28869595 rbsB-2 PSPTO_2399 - ribose ABC transporter, periplasmic ribose-binding protein 2355 61.19 0 2649567..2650571 - 334 28869596 rbsC-2 PSPTO_2400 - ribose ABC transporter, permease protein 2356 60.33 0 2650935..2651771 + 278 28869597 - PSPTO_2401 - transketolase, N-terminal subunit 2357 62.27 0 2651761..2652693 + 310 28869598 - PSPTO_2402 - transketolase, C-terminal subunit 2358 62.60 0 2652724..2654199 + 491 28869599 - PSPTO_2403 - glycerol kinase, putative 2359 62.67 0 2654285..2654584 - 99 28869600 - PSPTO_2404 - ArsR family transcriptional regulator 2360 61.81 0 2654680..2655771 + 363 28869601 xenA PSPTO_2405 - xenobiotic reductase A 2361 60.40 0 2655936..2656382 + 148 28869602 - PSPTO_2406 - hypothetical protein 2362 58.14 0 2656519..2657163 + 214 28869603 - PSPTO_2407 - hypothetical protein 2363 65.89 +1 2657199..2657969 - 256 28869604 ureD-1 PSPTO_2408 - urease accessory protein UreD 2364 63.20 +1 2658053..2658715 - 220 28869605 ureG-1 PSPTO_2409 - urease accessory protein UreG 2365 64.94 +1 2660459..2661154 - 231 28869606 - PSPTO_2411 - bifunctional urease subunit gamma/beta 2366 65.30 +1 2661170..2661901 - 243 28869607 ureF-1 PSPTO_2412 - urease accessory protein UreF 2367 65.31 +1 2661898..2662338 - 146 28869608 - PSPTO_2413 - urease accessory protein UreE 2368 60.29 0 2662361..2663050 - 229 28869609 - PSPTO_2414 - branched-chain amino acid ABC transporter, ATP-binding protein, putative 2369 58.81 0 2663053..2663790 - 245 28869610 - PSPTO_2415 - branched-chain amino acid ABC transporter, ATP-binding protein 2370 61.33 0 2663787..2664929 - 380 28869611 - PSPTO_2416 - branched-chain amino acid ABC transporter, permease protein 2371 60.54 0 2664931..2665812 - 293 28869612 - PSPTO_2417 - branched-chain amino acid ABC transporter, permease protein 2372 60.49 0 2665900..2667081 - 393 28869613 - PSPTO_2418 - branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein 2373 60.49 0 2667858..2669006 + 382 28869614 - PSPTO_2419 - regulatory protein, putative 2374 61.61 0 2669003..2669635 + 210 28869615 - PSPTO_2420 - transcription antitermination protein, putative 2375 62.96 +1 2669857..2671392 + 511 28869616 amdA PSPTO_2421 - amidase 2376 52.19 -1 2671508..2673427 - 639 28869617 - PSPTO_2422 - hypothetical protein 2377 60.21 0 2673558..2674532 - 324 28869618 - PSPTO_2423 - aliphatic sulfonate ABC transporter periplasmic substrate-binding protein 2378 62.29 0 2674609..2675568 - 319 28869619 - PSPTO_2424 - D-isomer specific 2-hydroxyacid dehydrogenase family protein 2379 60.36 0 2675565..2676911 - 448 28869620 - PSPTO_2425 - NtaA/SnaA/SoxA family monooxygenase 2380 54.19 -1 2677987..2678964 + 325 28869621 - PSPTO_2426 - ISPssy, transposase 2381 51.42 -1 2679142..2680236 + 364 28869622 - PSPTO_2427 - serine hydroxymethyltransferase, putative 2382 49.29 -2 2680315..2681655 + 446 28869623 - PSPTO_2428 - multidrug resistance protein NorM, putative 2383 46.40 -2 2681681..2683111 + 476 28869624 - PSPTO_2429 - CapK domain-containing protein 2384 46.75 -2 2683108..2684091 + 327 28869625 - PSPTO_2430 - pyridoxal-phosphate dependent enzyme family protein 2385 43.46 -2 2684150..2685067 + 305 28869626 - PSPTO_2431 - hypothetical protein 2386 54.19 -1 2685197..2686174 - 325 28869627 - PSPTO_2432 - ISPssy, transposase 2387 45.45 -2 2686388..2686519 - 43 28869628 - PSPTO_2433 - hypothetical protein 2388 48.09 -2 2686542..2687483 + 313 28869629 - PSPTO_2434 - D-isomer specific 2-hydroxyacid dehydrogenase family protein 2389 49.58 -2 2687499..2688914 + 471 28869630 - PSPTO_2435 - oxidoreductase, FAD-binding, putative 2390 48.33 -2 2689146..2689505 + 119 28869631 - PSPTO_2436 - ISPsy5, Orf1 2391 56.31 0 2689523..2691076 + 517 28869632 - PSPTO_2437 - ISPsy5, transposase 2392 50.92 -1 2691134..2692657 + 507 28869633 - PSPTO_2438 - amine oxidase, flavin-containing 2393 59.49 0 2692713..2693924 + 403 28869634 - PSPTO_2439 - acyl-CoA dehydrogenase family protein 2394 57.58 0 2693952..2695139 + 395 28869635 - PSPTO_2440 - acyl-CoA dehydrogenase family protein 2395 56.73 0 2695933..2698065 + 710 28869636 - PSPTO_2441 - methyl-accepting chemotaxis protein 2396 63.25 +1 2698089..2699552 + 487 28869637 - PSPTO_2442 - CheW domain-containing protein 2397 53.97 -1 2699607..2699732 + 41 28869638 - PSPTO_2443 - hypothetical protein 2398 60.49 0 2699806..2700291 - 161 28869639 - PSPTO_2444 - acetyltransferase 2399 61.87 0 2700352..2700789 - 145 28869640 - PSPTO_2445 - hypothetical protein 2400 59.82 0 2700804..2701694 - 296 28869641 - PSPTO_2446 - metallo-beta-lactamase superfamily protein 2401 62.94 +1 2701802..2702686 + 294 28869642 - PSPTO_2447 - LysR family transcriptional regulator 2402 59.66 0 2702812..2704752 - 646 28869643 - PSPTO_2448 - methyl-accepting chemotaxis protein 2403 63.18 +1 2705019..2705591 - 190 28869644 soxG-2 PSPTO_2449 - sarcosine oxidase, gamma subunit 2404 61.95 0 2705595..2708501 - 968 28869645 soxA-2 PSPTO_2450 - sarcosine oxidase, alpha subunit 2405 59.48 0 2708498..2708803 - 101 28869646 soxD-2 PSPTO_2451 - sarcosine oxidase, delta subunit 2406 60.95 0 2708817..2710058 - 413 28869647 soxB-2 PSPTO_2452 - sarcosine oxidase, beta subunit 2407 61.46 0 2710040..2710942 - 300 28869648 folD-1 PSPTO_2453 - methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase 2408 56.98 0 2710939..2711805 - 288 28869649 purU-2 PSPTO_2454 - formyltetrahydrofolate deformylase 2409 56.96 0 2712390..2712626 + 78 28869650 - PSPTO_2455 - hypothetical protein 2410 54.70 0 2712652..2712768 - 38 28869651 - PSPTO_2456 - hypothetical protein 2411 46.37 -2 2712992..2714518 + 508 28869652 - PSPTO_2457 - hypothetical protein 2412 47.32 -2 2714515..2715129 + 204 28869653 - PSPTO_2458 - hypothetical protein 2413 56.31 0 2715565..2717118 - 517 28869654 - PSPTO_2460 - ISPsy5, transposase 2414 48.33 -2 2717136..2717495 - 119 28869655 - PSPTO_2461 - ISPsy5, Orf1 2415 60.42 0 2718060..2720171 - 703 28869656 - PSPTO_2463 - TonB-dependent siderophore receptor, putative 2416 57.32 0 2720385..2721689 - 434 28869657 - PSPTO_2464 - Mn2+/Fe2+ transporter 2417 53.08 -1 2722266..2723288 + 340 28869658 - PSPTO_2465 - ISPsy7, transposase 2418 62.00 0 2723961..2724710 + 249 28869659 - PSPTO_2466 - carbon-nitrogen family hydrolase 2419 61.24 0 2724717..2725970 - 417 28869660 - PSPTO_2467 - major facilitator family transporter 2420 57.38 0 2726077..2726259 - 60 28869661 - PSPTO_2468 - hypothetical protein 2421 61.02 0 2726261..2726632 - 123 28869662 - PSPTO_2469 - hypothetical protein 2422 59.34 0 2726819..2727910 + 363 28869663 - PSPTO_2470 - senescence marker protein-30 family protein 2423 60.79 0 2728020..2728853 + 277 28869664 - PSPTO_2471 - hypothetical protein 2424 60.47 0 2729060..2731045 + 661 28869665 - PSPTO_2472 - methyl-accepting chemotaxis protein 2425 58.85 0 2731062..2731982 + 306 28869666 - PSPTO_2473 - periplasmic substrate-binding protein 2426 59.62 0 2732375..2733325 - 316 28869667 - PSPTO_2474 - DNA/RNA non-specific endonuclease 2427 57.87 0 2733477..2735273 + 598 28869668 - PSPTO_2475 - methyl-accepting chemotaxis protein 2428 56.73 0 2735382..2735693 + 103 28869669 - PSPTO_2476 - hypothetical protein 2429 61.15 0 2735702..2736100 - 132 28869670 - PSPTO_2477 - endoribonuclease L-PSP family protein 2430 64.20 +1 2736166..2738154 - 662 28869671 topB PSPTO_2478 - DNA topoisomerase III 2431 60.39 0 2738331..2739158 - 275 28869672 - PSPTO_2479 - hypothetical protein 2432 58.47 0 2739439..2741328 + 629 28869673 - PSPTO_2480 - methyl-accepting chemotaxis protein 2433 66.42 +1 2741606..2742427 + 273 28869674 tonB-2 PSPTO_2481 - tonB protein 2434 62.00 0 2742562..2743290 + 242 28869675 exbB-3 PSPTO_2482 - TonB system transport protein ExbB 2435 58.06 0 2743322..2743693 + 123 28869676 exbD-3 PSPTO_2483 - TonB system transport protein ExbD 2436 59.93 0 2743976..2746378 + 800 28869677 - PSPTO_2484 - TonB-dependent siderophore receptor, putative 2437 53.18 -1 2746748..2747770 + 340 28869678 - PSPTO_2485 - ISPsy7, transposase 2438 58.09 0 2748125..2749162 - 345 28869679 - PSPTO_2486 - ABC transporter, periplasmic substrate-binding protein, putative 2439 61.64 0 2749395..2750210 + 271 28869680 - PSPTO_2487 - hypothetical protein 2440 59.52 0 2750281..2751189 + 302 28869681 - PSPTO_2488 - glutaminase 2441 62.86 +1 2751293..2752369 + 358 28869682 - PSPTO_2489 - hypothetical protein 2442 61.98 0 2752511..2754322 + 603 28869683 - PSPTO_2490 - ABC transporter, ATP-binding/permease protein 2443 59.44 0 2754410..2755447 + 345 28869684 - PSPTO_2491 - aldo/keto reductase family oxidoreductase 2444 61.80 0 2755531..2756331 + 266 28869685 - PSPTO_2492 - short chain dehydrogenase/reductase family oxidoreductase 2445 60.86 0 2756324..2758150 + 608 28869686 - PSPTO_2493 - glycosy hydrolase family protein 2446 62.27 0 2758195..2759103 - 302 28869687 - PSPTO_2494 - LysR family transcriptional regulator 2447 59.18 0 2759406..2760287 + 293 28869688 - PSPTO_2495 - alpha/beta fold family hydrolase 2448 59.34 0 2760925..2762343 - 472 28869689 - PSPTO_2496 - major facilitator family transporter 2449 49.21 -2 2762532..2762657 - 41 28869690 - PSPTO_2497 - hypothetical protein 58.61 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.