version 1.0
Pseudomonas syringae pv. tomato str. DC3000, complete genome - 1..6397126 5475 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2284 59.66 0 2581120..2583375 - 751 28869526 - PSPTO_2326 - extracellular solute-binding protein/sensory box protein 2285 54.19 -1 2583651..2584628 - 325 28869527 - PSPTO_2328 - ISPssy, transposase 2286 61.58 0 2585606..2585998 - 130 28869528 - PSPTO_2330 - response regulator 2287 63.14 +1 2586250..2587581 - 443 28869529 - PSPTO_2331 - deoxyguanosinetriphosphate triphosphohydrolase-like protein 2288 60.90 0 2587685..2588152 + 155 28869530 - PSPTO_2332 - hypothetical protein 2289 61.07 0 2588101..2588493 - 130 28869531 - PSPTO_2333 - hypothetical protein 2290 58.10 0 2588498..2588812 - 104 28869532 - PSPTO_2334 - hypothetical protein 2291 58.36 0 2589210..2590280 + 356 28869533 - PSPTO_2335 - exopolysaccharide production protein ExoZ, putative 2292 58.08 0 2590311..2590601 + 96 28869534 - PSPTO_2336 - hypothetical protein 2293 63.76 +1 2590640..2591569 + 309 28869535 pcaQ PSPTO_2337 - pca operon transcriptional activator PcaQ 2294 60.00 0 2591697..2592416 + 239 28869536 pcaH PSPTO_2338 - protocatechuate 3,4-dioxygenase, beta subunit 2295 59.54 0 2592428..2593030 + 200 28869537 pcaG PSPTO_2339 - protocatechuate 3,4-dioxygenase, alpha subunit 2296 63.11 +1 2593098..2594447 + 449 28869538 pcaK PSPTO_2340 - 4-hydroxybenzoate transporter 2297 64.90 +1 2594472..2595833 + 453 28869539 pcaB PSPTO_2341 - 3-carboxy-cis,cis-muconate cycloisomerase 2298 57.89 0 2595830..2596228 + 132 28869540 pcaC-1 PSPTO_2342 - 4-carboxymuconolactone decarboxylase 2299 60.38 0 2596721..2597977 - 418 28869541 - PSPTO_2343 - OprD family outer membrane porin 2300 60.55 0 2598221..2599087 + 288 28869542 - PSPTO_2344 - hypothetical protein 2301 61.97 0 2599195..2600514 - 439 28869543 - PSPTO_2345 - transporter, putative 2302 60.17 0 2601132..2603039 + 635 28869544 - PSPTO_2346 - 4-hydroxyphenylpyruvate dioxygenase, putative 2303 57.89 0 2603144..2603815 + 223 28869545 - PSPTO_2347 - TetR family transcriptional regulator 2304 63.27 +1 2603819..2604673 - 284 28869546 - PSPTO_2348 - shikimate 5-dehydrogenase 2305 61.05 0 2604859..2605749 + 296 170660221 - PSPTO_2349 - RNA pseudouridine synthase family protein 2306 54.67 0 2605826..2606050 - 74 28869547 - PSPTO_2350 - putative lipoprotein 2307 62.54 0 2606146..2606751 - 201 28869548 mobA PSPTO_2351 - molybdopterin-guanine dinucleotide biosynthesis protein A 2308 63.70 +1 2606827..2607366 + 179 28869549 moaB PSPTO_2352 - molybdenum cofactor biosynthesis protein B 2309 64.69 +1 2607373..2608584 + 403 28869550 moeA PSPTO_2353 - molybdopterin biosynthesis protein MoeA 2310 59.44 0 2608674..2609600 + 308 28869551 - PSPTO_2354 - glycosyl transferase, group 2 family protein 2311 61.53 0 2609648..2611456 - 602 28869552 - PSPTO_2355 - glutathione-regulated potassium-efflux system protein 2312 55.21 0 2611521..2611904 - 127 28869553 - PSPTO_2356 - hypothetical protein 2313 58.22 0 2611931..2612356 + 141 28869554 - PSPTO_2357 - hypothetical protein 2314 62.20 0 2612511..2613539 - 342 28869555 - PSPTO_2358 - hypothetical protein 2315 64.53 +1 2613769..2614800 + 343 28869556 allD PSPTO_2359 - ureidoglycolate dehydrogenase 2316 55.93 0 2614830..2615099 + 89 28869557 - PSPTO_2360 - hypothetical protein 2317 61.47 0 2615212..2615442 + 76 28869558 - PSPTO_2361 - hypothetical protein 2318 59.22 0 2615439..2616230 + 263 28869559 map-2 PSPTO_2362 - methionine aminopeptidase, type I 2319 54.17 -1 2616307..2616546 - 79 28869560 - PSPTO_2363 - hypothetical protein 2320 57.83 0 2616752..2617453 - 233 28869561 endA PSPTO_2364 - endonuclease I 2321 57.94 0 2617458..2617709 - 83 28869562 - PSPTO_2365 - hypothetical protein 2322 54.67 0 2617846..2618070 + 74 28869563 - PSPTO_2366 - putative lipoprotein 2323 56.88 0 2618254..2619213 + 319 28869564 rbsB-1 PSPTO_2367 - ribose ABC transporter, periplasmic ribose-binding protein 2324 60.04 0 2619267..2620820 + 517 28869565 rbsA-1 PSPTO_2368 - ribose ABC transporter, ATP-binding protein 2325 62.54 0 2620817..2621809 + 330 28869566 rbsC-1 PSPTO_2369 - ribose ABC transporter, permease protein 2326 63.52 +1 2621811..2622827 + 338 28869567 rbsR PSPTO_2370 - ribose operon repressor 2327 62.98 +1 2622858..2623778 + 306 28869568 rbsK PSPTO_2371 - ribokinase 2328 58.77 0 2623775..2624179 + 134 28869569 - PSPTO_2372 - D-ribose pyranase 2329 59.94 0 2624219..2625244 + 341 28869570 - PSPTO_2373 - inosine/uridine-preferring nucleoside hydrolase 2330 55.92 0 2625268..2625723 - 151 28869571 - PSPTO_2374 - hypothetical protein 2331 60.42 0 2625780..2626115 + 111 28869572 - PSPTO_2375 - putative lipoprotein 2332 48.36 -2 2626181..2626393 - 70 28869573 - PSPTO_2376 - cold shock domain-contain protein 2333 59.15 0 2626699..2627004 - 101 28869574 - PSPTO_2377 - hypothetical protein 2334 57.51 0 2627367..2629289 + 640 28869575 thrS PSPTO_2378 - threonyl-tRNA synthetase 2335 51.87 -1 2629307..2629840 + 177 28869576 infC PSPTO_2379 - translation initiation factor IF-3 2336 49.74 -2 2629901..2630095 + 64 28869577 rpmI PSPTO_2380 - 50S ribosomal protein L35 2337 52.10 -1 2630125..2630481 + 118 28869578 rplT PSPTO_2381 - 50S ribosomal protein L20 2338 58.41 0 2630585..2631601 + 338 28869579 pheS PSPTO_2382 - phenylalanyl-tRNA synthetase subunit alpha 2339 61.29 0 2631630..2634008 + 792 28869580 pheT PSPTO_2383 - phenylalanyl-tRNA synthetase subunit beta 2340 53.80 -1 2634012..2634314 + 100 28869581 ihfA PSPTO_2384 - integration host factor subunit alpha 2341 55.74 0 2634295..2634651 + 118 28869582 - PSPTO_2385 - transcriptional regulator, putative 2342 60.59 0 2635219..2636106 - 295 28869583 - PSPTO_2386 - C-5 cytosine-specific DNA methylase family protein 2343 59.24 0 2636500..2637522 + 340 28869584 - PSPTO_2387 - ISPsy4, transposase 2344 57.78 0 2637519..2638328 + 269 28869585 - PSPTO_2388 - transposase/IS protein 2345 56.96 0 2638723..2639505 - 260 28869586 - PSPTO_2389 - hypothetical protein 2346 46.04 -2 2639556..2640326 + 256 28869587 - PSPTO_2390 - hypothetical protein 2347 55.45 0 2640619..2640939 - 106 28869588 - PSPTO_2391 - hypothetical protein 2348 51.94 -1 2640996..2641355 + 119 28869589 - PSPTO_2392 - ISPsy5, Orf1 2349 46.25 -2 2643148..2644068 - 306 28869590 - PSPTO_2394 - radical SAM domain-containing protein 2350 60.27 0 2644361..2645314 - 317 28869591 - PSPTO_2395 - transcriptional regulator, putative 2351 61.42 0 2645396..2646196 - 266 28869592 - PSPTO_2396 - short chain dehydrogenase/reductase family oxidoreductase 2352 64.05 +1 2646227..2646991 - 254 28869593 - PSPTO_2397 - short chain dehydrogenase 2353 63.14 +1 2647023..2648552 - 509 28869594 rbsA-2 PSPTO_2398 - ribose ABC transporter, ATP-binding protein 2354 61.52 0 2648568..2649500 - 310 28869595 rbsB-2 PSPTO_2399 - ribose ABC transporter, periplasmic ribose-binding protein 2355 61.19 0 2649567..2650571 - 334 28869596 rbsC-2 PSPTO_2400 - ribose ABC transporter, permease protein 2356 60.33 0 2650935..2651771 + 278 28869597 - PSPTO_2401 - transketolase, N-terminal subunit 2357 62.27 0 2651761..2652693 + 310 28869598 - PSPTO_2402 - transketolase, C-terminal subunit 2358 62.60 0 2652724..2654199 + 491 28869599 - PSPTO_2403 - glycerol kinase, putative 2359 62.67 0 2654285..2654584 - 99 28869600 - PSPTO_2404 - ArsR family transcriptional regulator 2360 61.81 0 2654680..2655771 + 363 28869601 xenA PSPTO_2405 - xenobiotic reductase A 2361 60.40 0 2655936..2656382 + 148 28869602 - PSPTO_2406 - hypothetical protein 2362 58.14 0 2656519..2657163 + 214 28869603 - PSPTO_2407 - hypothetical protein 2363 65.89 +1 2657199..2657969 - 256 28869604 ureD-1 PSPTO_2408 - urease accessory protein UreD 2364 63.20 +1 2658053..2658715 - 220 28869605 ureG-1 PSPTO_2409 - urease accessory protein UreG 2365 64.94 +1 2660459..2661154 - 231 28869606 - PSPTO_2411 - bifunctional urease subunit gamma/beta 2366 65.30 +1 2661170..2661901 - 243 28869607 ureF-1 PSPTO_2412 - urease accessory protein UreF 2367 65.31 +1 2661898..2662338 - 146 28869608 - PSPTO_2413 - urease accessory protein UreE 2368 60.29 0 2662361..2663050 - 229 28869609 - PSPTO_2414 - branched-chain amino acid ABC transporter, ATP-binding protein, putative 2369 58.81 0 2663053..2663790 - 245 28869610 - PSPTO_2415 - branched-chain amino acid ABC transporter, ATP-binding protein 2370 61.33 0 2663787..2664929 - 380 28869611 - PSPTO_2416 - branched-chain amino acid ABC transporter, permease protein 2371 60.54 0 2664931..2665812 - 293 28869612 - PSPTO_2417 - branched-chain amino acid ABC transporter, permease protein 2372 60.49 0 2665900..2667081 - 393 28869613 - PSPTO_2418 - branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein 2373 60.49 0 2667858..2669006 + 382 28869614 - PSPTO_2419 - regulatory protein, putative 2374 61.61 0 2669003..2669635 + 210 28869615 - PSPTO_2420 - transcription antitermination protein, putative 2375 62.96 +1 2669857..2671392 + 511 28869616 amdA PSPTO_2421 - amidase 2376 52.19 -1 2671508..2673427 - 639 28869617 - PSPTO_2422 - hypothetical protein 2377 60.21 0 2673558..2674532 - 324 28869618 - PSPTO_2423 - aliphatic sulfonate ABC transporter periplasmic substrate-binding protein 2378 62.29 0 2674609..2675568 - 319 28869619 - PSPTO_2424 - D-isomer specific 2-hydroxyacid dehydrogenase family protein 2379 60.36 0 2675565..2676911 - 448 28869620 - PSPTO_2425 - NtaA/SnaA/SoxA family monooxygenase 2380 54.19 -1 2677987..2678964 + 325 28869621 - PSPTO_2426 - ISPssy, transposase 2381 51.42 -1 2679142..2680236 + 364 28869622 - PSPTO_2427 - serine hydroxymethyltransferase, putative 2382 49.29 -2 2680315..2681655 + 446 28869623 - PSPTO_2428 - multidrug resistance protein NorM, putative 2383 46.40 -2 2681681..2683111 + 476 28869624 - PSPTO_2429 - CapK domain-containing protein 58.61 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0