version 1.0
Pseudomonas syringae pv. tomato str. DC3000, complete genome - 1..6397126 5475 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2247 62.73 0 2530833..2533424 + 863 28869489 - PSPTO_2289 - aconitate hydratase 2248 63.06 +1 2533545..2534735 + 396 28869490 - PSPTO_2290 - hypothetical protein 2249 55.68 0 2534741..2535559 - 272 28869491 - PSPTO_2291 - hypothetical protein 2250 60.61 0 2535753..2538128 + 791 28869492 ppsA PSPTO_2292 - phosphoenolpyruvate synthase 2251 63.75 +1 2538321..2539313 + 330 28869493 - PSPTO_2293 - esterase/lipase/thioesterase family protein 2252 58.69 0 2539402..2539890 + 162 28869494 - PSPTO_2294 - ribonuclease activity regulator protein RraA 2253 59.44 0 2539902..2540897 + 331 28869495 cmaX PSPTO_2295 - cmaX protein 2254 57.03 0 2540983..2541231 + 82 28869496 crfX PSPTO_2296 - crfX protein 2255 55.52 0 2541234..2542058 + 274 28869497 - PSPTO_2297 - hypothetical protein 2256 48.80 -2 2542234..2542731 + 165 28869498 - PSPTO_2298 - RNA polymerase sigma factor SigX 2257 55.07 0 2542838..2543872 + 344 28869499 oprF PSPTO_2299 - outer membrane porin OprF 2258 63.25 +1 2543960..2544721 - 253 28869500 cobA PSPTO_2300 - uroporphyrin-III C-methyltransferase 2259 62.27 0 2544732..2547458 - 908 28869501 nasA PSPTO_2301 - nitrate reductase 2260 61.46 0 2547449..2548678 - 409 28869502 - PSPTO_2302 - assimilatory nitrate reductase electron transfer subunit 2261 63.33 +1 2548961..2550550 - 529 28869503 - PSPTO_2303 - serine/threonine protein kinase, putative 2262 63.28 +1 2550630..2551841 - 403 28869504 - PSPTO_2304 - nitrate transporter 2263 57.13 0 2552817..2554064 + 415 28869505 lsc-2 PSPTO_2305 - levansucrase 2264 60.59 0 2554122..2554697 - 191 28869506 nasT PSPTO_2306 - response regulator NasT 2265 63.70 +1 2554712..2555923 - 403 28869507 - PSPTO_2307 - hypothetical protein 2266 55.05 0 2555920..2556117 - 65 28869508 - PSPTO_2308 - hypothetical protein 2267 62.11 0 2556168..2557199 + 343 28869509 pyrD PSPTO_2309 - dihydroorotate dehydrogenase 2 2268 53.70 -1 2557345..2557560 - 71 28869510 rmf PSPTO_2310 - ribosome modulation factor-related protein 2269 61.69 0 2558146..2560434 + 762 28869511 - PSPTO_2311 - 23S rRNA m(2)G2445 methyltransferase 2270 60.24 0 2560473..2561996 + 507 28869512 - PSPTO_2312 - CHASE/PAS domain-containing protein 2271 62.35 0 2561986..2562957 + 323 28869513 - PSPTO_2313 - sensory box protein 2272 61.42 0 2563001..2564467 - 488 28869514 dacB PSPTO_2314 - D-alanyl-D-alanine carboxypeptidase 2273 54.78 0 2564794..2565138 + 114 28869515 - PSPTO_2315 - hypothetical protein 2274 61.44 0 2565244..2566677 - 477 28869516 - PSPTO_2316 - sensor histidine kinase/response regulator 2275 50.09 -2 2566716..2568320 + 534 28869517 - PSPTO_2317 - hypothetical protein 2276 46.03 -2 2568386..2568700 + 104 28869518 - PSPTO_2318 - hypothetical protein 2277 51.69 -1 2569753..2570166 - 137 28869519 - PSPTO_2319 - resolvase, putative 2278 49.12 -2 2571887..2573140 - 417 28869520 - PSPTO_2320 - hypothetical protein 2279 59.24 0 2573654..2574676 + 340 28869521 - PSPTO_2321 - ISPsy4, transposase 2280 57.78 0 2574673..2575482 + 269 28869522 - PSPTO_2322 - transposase/IS protein 2281 51.20 -1 2575936..2577726 - 596 28869523 - PSPTO_2323 - hypothetical protein 2282 54.19 -1 2577833..2578810 - 325 28869524 - PSPTO_2324 - ISPssy, transposase 2283 46.74 -2 2580097..2580357 - 86 28869525 - PSPTO_2325 - hypothetical protein 2284 59.66 0 2581120..2583375 - 751 28869526 - PSPTO_2326 - extracellular solute-binding protein/sensory box protein 2285 54.19 -1 2583651..2584628 - 325 28869527 - PSPTO_2328 - ISPssy, transposase 2286 61.58 0 2585606..2585998 - 130 28869528 - PSPTO_2330 - response regulator 2287 63.14 +1 2586250..2587581 - 443 28869529 - PSPTO_2331 - deoxyguanosinetriphosphate triphosphohydrolase-like protein 2288 60.90 0 2587685..2588152 + 155 28869530 - PSPTO_2332 - hypothetical protein 2289 61.07 0 2588101..2588493 - 130 28869531 - PSPTO_2333 - hypothetical protein 2290 58.10 0 2588498..2588812 - 104 28869532 - PSPTO_2334 - hypothetical protein 2291 58.36 0 2589210..2590280 + 356 28869533 - PSPTO_2335 - exopolysaccharide production protein ExoZ, putative 2292 58.08 0 2590311..2590601 + 96 28869534 - PSPTO_2336 - hypothetical protein 2293 63.76 +1 2590640..2591569 + 309 28869535 pcaQ PSPTO_2337 - pca operon transcriptional activator PcaQ 2294 60.00 0 2591697..2592416 + 239 28869536 pcaH PSPTO_2338 - protocatechuate 3,4-dioxygenase, beta subunit 2295 59.54 0 2592428..2593030 + 200 28869537 pcaG PSPTO_2339 - protocatechuate 3,4-dioxygenase, alpha subunit 2296 63.11 +1 2593098..2594447 + 449 28869538 pcaK PSPTO_2340 - 4-hydroxybenzoate transporter 2297 64.90 +1 2594472..2595833 + 453 28869539 pcaB PSPTO_2341 - 3-carboxy-cis,cis-muconate cycloisomerase 2298 57.89 0 2595830..2596228 + 132 28869540 pcaC-1 PSPTO_2342 - 4-carboxymuconolactone decarboxylase 2299 60.38 0 2596721..2597977 - 418 28869541 - PSPTO_2343 - OprD family outer membrane porin 2300 60.55 0 2598221..2599087 + 288 28869542 - PSPTO_2344 - hypothetical protein 2301 61.97 0 2599195..2600514 - 439 28869543 - PSPTO_2345 - transporter, putative 2302 60.17 0 2601132..2603039 + 635 28869544 - PSPTO_2346 - 4-hydroxyphenylpyruvate dioxygenase, putative 2303 57.89 0 2603144..2603815 + 223 28869545 - PSPTO_2347 - TetR family transcriptional regulator 2304 63.27 +1 2603819..2604673 - 284 28869546 - PSPTO_2348 - shikimate 5-dehydrogenase 2305 61.05 0 2604859..2605749 + 296 170660221 - PSPTO_2349 - RNA pseudouridine synthase family protein 2306 54.67 0 2605826..2606050 - 74 28869547 - PSPTO_2350 - putative lipoprotein 2307 62.54 0 2606146..2606751 - 201 28869548 mobA PSPTO_2351 - molybdopterin-guanine dinucleotide biosynthesis protein A 2308 63.70 +1 2606827..2607366 + 179 28869549 moaB PSPTO_2352 - molybdenum cofactor biosynthesis protein B 2309 64.69 +1 2607373..2608584 + 403 28869550 moeA PSPTO_2353 - molybdopterin biosynthesis protein MoeA 2310 59.44 0 2608674..2609600 + 308 28869551 - PSPTO_2354 - glycosyl transferase, group 2 family protein 2311 61.53 0 2609648..2611456 - 602 28869552 - PSPTO_2355 - glutathione-regulated potassium-efflux system protein 2312 55.21 0 2611521..2611904 - 127 28869553 - PSPTO_2356 - hypothetical protein 2313 58.22 0 2611931..2612356 + 141 28869554 - PSPTO_2357 - hypothetical protein 2314 62.20 0 2612511..2613539 - 342 28869555 - PSPTO_2358 - hypothetical protein 2315 64.53 +1 2613769..2614800 + 343 28869556 allD PSPTO_2359 - ureidoglycolate dehydrogenase 2316 55.93 0 2614830..2615099 + 89 28869557 - PSPTO_2360 - hypothetical protein 2317 61.47 0 2615212..2615442 + 76 28869558 - PSPTO_2361 - hypothetical protein 2318 59.22 0 2615439..2616230 + 263 28869559 map-2 PSPTO_2362 - methionine aminopeptidase, type I 2319 54.17 -1 2616307..2616546 - 79 28869560 - PSPTO_2363 - hypothetical protein 2320 57.83 0 2616752..2617453 - 233 28869561 endA PSPTO_2364 - endonuclease I 2321 57.94 0 2617458..2617709 - 83 28869562 - PSPTO_2365 - hypothetical protein 2322 54.67 0 2617846..2618070 + 74 28869563 - PSPTO_2366 - putative lipoprotein 2323 56.88 0 2618254..2619213 + 319 28869564 rbsB-1 PSPTO_2367 - ribose ABC transporter, periplasmic ribose-binding protein 2324 60.04 0 2619267..2620820 + 517 28869565 rbsA-1 PSPTO_2368 - ribose ABC transporter, ATP-binding protein 2325 62.54 0 2620817..2621809 + 330 28869566 rbsC-1 PSPTO_2369 - ribose ABC transporter, permease protein 2326 63.52 +1 2621811..2622827 + 338 28869567 rbsR PSPTO_2370 - ribose operon repressor 2327 62.98 +1 2622858..2623778 + 306 28869568 rbsK PSPTO_2371 - ribokinase 2328 58.77 0 2623775..2624179 + 134 28869569 - PSPTO_2372 - D-ribose pyranase 2329 59.94 0 2624219..2625244 + 341 28869570 - PSPTO_2373 - inosine/uridine-preferring nucleoside hydrolase 2330 55.92 0 2625268..2625723 - 151 28869571 - PSPTO_2374 - hypothetical protein 2331 60.42 0 2625780..2626115 + 111 28869572 - PSPTO_2375 - putative lipoprotein 2332 48.36 -2 2626181..2626393 - 70 28869573 - PSPTO_2376 - cold shock domain-contain protein 2333 59.15 0 2626699..2627004 - 101 28869574 - PSPTO_2377 - hypothetical protein 2334 57.51 0 2627367..2629289 + 640 28869575 thrS PSPTO_2378 - threonyl-tRNA synthetase 2335 51.87 -1 2629307..2629840 + 177 28869576 infC PSPTO_2379 - translation initiation factor IF-3 2336 49.74 -2 2629901..2630095 + 64 28869577 rpmI PSPTO_2380 - 50S ribosomal protein L35 2337 52.10 -1 2630125..2630481 + 118 28869578 rplT PSPTO_2381 - 50S ribosomal protein L20 2338 58.41 0 2630585..2631601 + 338 28869579 pheS PSPTO_2382 - phenylalanyl-tRNA synthetase subunit alpha 2339 61.29 0 2631630..2634008 + 792 28869580 pheT PSPTO_2383 - phenylalanyl-tRNA synthetase subunit beta 2340 53.80 -1 2634012..2634314 + 100 28869581 ihfA PSPTO_2384 - integration host factor subunit alpha 2341 55.74 0 2634295..2634651 + 118 28869582 - PSPTO_2385 - transcriptional regulator, putative 2342 60.59 0 2635219..2636106 - 295 28869583 - PSPTO_2386 - C-5 cytosine-specific DNA methylase family protein 2343 59.24 0 2636500..2637522 + 340 28869584 - PSPTO_2387 - ISPsy4, transposase 2344 57.78 0 2637519..2638328 + 269 28869585 - PSPTO_2388 - transposase/IS protein 2345 56.96 0 2638723..2639505 - 260 28869586 - PSPTO_2389 - hypothetical protein 2346 46.04 -2 2639556..2640326 + 256 28869587 - PSPTO_2390 - hypothetical protein 58.61 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0