version 1.0
Pseudomonas syringae pv. tomato str. DC3000, complete genome - 1..6397126 5475 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1822 55.86 0 2033359..2033904 + 181 28869064 - PSPTO_1859 - isochorismatase family protein 1823 57.11 0 2034000..2034491 - 163 28869065 - PSPTO_1860 - hypothetical protein 1824 60.15 0 2034565..2035377 - 270 28869066 - PSPTO_1861 - short chain dehydrogenase 1825 57.29 0 2035455..2036456 - 333 28869067 - PSPTO_1862 - oxidoreductase, zinc-binding 1826 60.16 0 2036536..2037396 - 286 28869068 - PSPTO_1863 - alpha/beta fold family hydrolase 1827 61.72 0 2037413..2038201 - 262 28869069 - PSPTO_1864 - short chain dehydrogenase/reductase family oxidoreductase 1828 62.51 0 2038243..2039325 - 360 28869070 - PSPTO_1865 - NADH:flavin oxidoreductase/NADH oxidase family protein 1829 59.00 0 2039589..2040188 - 199 28869071 - PSPTO_1866 - TetR family transcriptional regulator 1830 54.78 0 2041244..2042656 - 470 28869072 hss PSPTO_1868 - homospermidine synthase 1831 60.48 0 2043020..2043310 - 96 28869073 - PSPTO_1869 - hypothetical protein 1832 60.36 0 2043345..2045420 - 691 28869074 - PSPTO_1870 - sensory box histidine kinase/response regulator 1833 61.50 0 2045768..2047219 - 483 28869075 - PSPTO_1871 - cytosine/purine/uracil/thiamine/allantoin permease family protein 1834 55.21 0 2047315..2047410 - 31 28869076 - PSPTO_1872 - hypothetical protein 1835 63.22 +1 2047587..2048282 + 231 28869077 - PSPTO_1873 - GntR family transcriptional regulator 1836 61.48 0 2048293..2049024 + 243 28869078 hyuE PSPTO_1874 - hydantoin racemase 1837 58.82 0 2049167..2050402 - 411 28869079 fdH PSPTO_1875 - glutathione-dependent formaldehyde dehydrogenase 1838 59.80 0 2050480..2050683 + 67 28869080 - PSPTO_1876 - hypothetical protein 1839 52.99 -1 2050724..2051125 + 133 28869081 - PSPTO_1877 - ISPsy11, transposase OrfA 1840 53.48 -1 2051139..2051957 + 272 28869082 - PSPTO_1878 - ISPsy11, transposase OrfB 1841 60.45 0 2051888..2052739 - 283 28869083 - PSPTO_1879 - LysR family transcriptional regulator 1842 64.53 +1 2052948..2053790 + 280 28869084 - PSPTO_1880 - 3-hydroxyisobutyrate dehydrogenase 1843 61.07 0 2053794..2055311 + 505 28869085 - PSPTO_1881 - aldehyde dehydrogenase family protein 1844 62.69 0 2055316..2056473 + 385 28869086 - PSPTO_1882 - M20/M25/M40 family peptidase 1845 58.90 0 2056905..2057831 - 308 28869087 - PSPTO_1883 - LysR family transcriptional regulator 1846 55.16 0 2058001..2058765 + 254 28869088 - PSPTO_1884 - hypothetical protein 1847 57.94 0 2058772..2059413 + 213 28869089 - PSPTO_1885 - amino acid transporter LysE 1848 61.95 0 2059427..2060803 - 458 28869090 sdaA PSPTO_1886 - L-serine dehydratase 1 1849 61.84 0 2060932..2061843 + 303 28869091 - PSPTO_1887 - LysR family transcriptional regulator 1850 63.22 +1 2061856..2063133 - 425 28869092 - PSPTO_1888 - hypothetical protein 1851 62.77 +1 2063891..2065276 - 461 28869093 - PSPTO_1889 - hypothetical protein 1852 61.86 0 2065300..2066547 - 415 28869094 gabT-3 PSPTO_1890 - 4-aminobutyrate aminotransferase 1853 62.71 0 2066812..2068302 + 496 28869095 pcD PSPTO_1891 - piperideine-6-carboxylate dehydrogenase 1854 63.72 +1 2068346..2069635 + 429 28869096 - PSPTO_1892 - hypothetical protein 1855 63.17 +1 2069648..2071021 - 457 28869097 - PSPTO_1893 - sensor histidine kinase 1856 63.80 +1 2071018..2071680 - 220 28869098 - PSPTO_1894 - DNA-binding response regulator 1857 54.92 0 2071848..2072111 + 87 28869099 - PSPTO_1895 - hypothetical protein 1858 60.44 0 2072111..2072656 + 181 28869100 - PSPTO_1896 - cytochrome b561 family protein 1859 60.97 0 2072695..2073993 + 432 28869101 - PSPTO_1897 - BNR/Asp-box repeat-containing protein 1860 62.32 0 2073990..2074610 + 206 28869102 - PSPTO_1898 - hypothetical protein 1861 60.72 0 2074621..2076654 + 677 28869103 - PSPTO_1899 - sulfatase family protein 1862 52.08 -1 2076844..2076939 + 31 28869104 - PSPTO_1900 - hypothetical protein 1863 55.93 0 2077011..2077625 + 204 28869105 bphO PSPTO_1901 - bacteriophytochrome heme oxygenase BphO 1864 59.87 0 2077622..2079859 + 745 28869106 bphP PSPTO_1902 - bacteriophytochrome histidine kinase 1865 49.20 -2 2079912..2080598 - 228 28869107 - PSPTO_1903 - hypothetical protein 1866 56.49 0 2080595..2084023 - 1142 28869108 - PSPTO_1904 - hypothetical protein 1867 58.33 0 2084126..2084365 + 79 28869109 - PSPTO_1905 - hypothetical protein 1868 61.61 0 2084332..2085657 - 441 28869110 - PSPTO_1906 - major facilitator family transporter 1869 61.27 0 2085974..2087158 - 394 28869111 pobA PSPTO_1907 - 4-hydroxybenzoate 3-monooxygenase 1870 59.54 0 2087309..2088178 + 289 28869112 pobR PSPTO_1908 - transcriptional regulator PobR 1871 60.12 0 2088230..2089603 - 457 28869113 - PSPTO_1909 - decarboxylase family protein 1872 60.00 0 2089979..2090728 + 249 28869114 - PSPTO_1910 - hypothetical protein 1873 62.17 0 2091127..2092728 + 533 28869115 - PSPTO_1911 - response regulator/TPR domain-containing protein 1874 59.05 0 2092725..2093420 + 231 28869116 - PSPTO_1912 - sensor histidine kinase 1875 53.20 -1 2093596..2093892 + 98 28869117 - PSPTO_1913 - hypothetical protein 1876 60.58 0 2093986..2094708 + 240 28869118 - PSPTO_1914 - short chain dehydrogenase/reductase family oxidoreductase 1877 59.19 0 2094705..2095346 + 213 28869119 - PSPTO_1915 - hexapeptide repeat-containing transferase 1878 54.57 0 2095352..2096368 + 338 28869120 - PSPTO_1916 - 3-oxoacyl-(acyl-carrier-protein) synthase III, putative 1879 56.89 0 2096418..2097665 - 415 28869121 - PSPTO_1917 - major facilitator family transporter 1880 60.53 0 2097934..2101455 - 1173 28869122 - PSPTO_1918 - glycosyl transferase, group 2 family protein 1881 60.19 0 2101530..2102255 - 241 28869123 - PSPTO_1919 - hypothetical protein 1882 58.80 0 2102255..2103373 - 372 28869124 - PSPTO_1920 - aminotransferase 1883 61.38 0 2103671..2105014 + 447 28869125 - PSPTO_1921 - glutamine synthetase 1884 63.30 +1 2105069..2106466 + 465 28869126 - PSPTO_1922 - major facilitator family transporter 1885 58.50 0 2106563..2107309 - 248 28869127 - PSPTO_1923 - hypothetical protein 1886 56.84 0 2107392..2107859 - 155 28869128 - PSPTO_1924 - hypothetical protein 1887 53.65 -1 2107909..2108223 - 104 28869129 - PSPTO_1925 - negative regulator of flagellin synthesis FlgM, putative 1888 58.37 0 2108384..2109130 - 248 28869130 - PSPTO_1926 - flagellar basal body P-ring biosynthesis protein FlgA 1889 53.51 -1 2109221..2110147 + 308 28869131 - PSPTO_1927 - chemotaxis protein CheV, putative 1890 58.36 0 2110184..2111026 + 280 28869132 cheR-2 PSPTO_1928 - chemotaxis protein methyltransferase CheR 1891 54.00 -1 2111107..2112567 + 486 28869133 - PSPTO_1929 - ISPsy6, transposase 1892 57.69 0 2112744..2113211 + 155 28869134 cynS PSPTO_1930 - cyanate hydratase 1893 58.23 0 2113222..2113695 + 157 28869135 - PSPTO_1931 - hypothetical protein 1894 55.97 0 2113745..2113903 + 52 28869136 - PSPTO_1932 - hypothetical protein 1895 56.86 0 2113970..2114377 + 135 28869137 flgB PSPTO_1933 - flagellar basal body rod protein FlgB 1896 56.01 0 2114381..2114821 + 146 28869138 flgC PSPTO_1934 - flagellar basal body rod protein FlgC 1897 57.68 0 2114837..2115526 + 229 28869139 flgD PSPTO_1935 - flagellar basal body rod modification protein 1898 57.47 0 2115552..2116877 + 441 28869140 flgE-1 PSPTO_1936 - flagellar hook protein FlgE 1899 60.70 0 2117067..2118827 + 586 28869141 flgE-2 PSPTO_1937 - flagellar hook protein FlgE 1900 61.11 0 2118936..2119079 + 47 28869142 - PSPTO_1938 - hypothetical protein 1901 61.27 0 2119303..2120043 + 246 28869143 flgF PSPTO_1939 - flagellar basal body rod protein FlgF 1902 60.96 0 2120090..2120878 + 262 28869144 flgG PSPTO_1940 - flagellar basal body rod protein FlgG 1903 61.20 0 2120963..2121676 + 237 28869145 flgH PSPTO_1941 - flagellar basal body L-ring protein 1904 61.62 0 2121690..2122799 + 369 28869146 flgI PSPTO_1942 - flagellar basal body P-ring protein 1905 61.47 0 2122810..2124060 + 416 28869147 flgJ PSPTO_1943 - peptidoglycan hydrolase 1906 59.73 0 2124072..2126132 + 686 28869148 flgK PSPTO_1944 - flagellar hook-associated protein FlgK 1907 59.64 0 2126146..2127738 + 530 28869149 flgL PSPTO_1945 - flagellar hook-associated protein FlgL 1908 59.17 0 2127827..2131402 + 1191 28869150 - PSPTO_1946 - glycosyl transferase, group 2 family protein 1909 59.24 0 2131534..2134440 + 968 28869151 - PSPTO_1947 - glycosyl transferase, group 2 family protein 1910 54.26 -1 2134726..2135652 + 308 28869152 - PSPTO_1948 - 3-oxoacyl-(acyl-carrier-protein) synthase III, putative 1911 55.71 0 2135981..2136829 + 282 28869153 - PSPTO_1949 - flagellin 1912 50.88 -1 2136896..2137294 + 132 28869154 - PSPTO_1950 - flagellin FlaG, putative 1913 58.55 0 2137378..2138856 + 492 28869155 fliD PSPTO_1951 - flagellar hook-associated protein FliD 1914 58.21 0 2138982..2139371 + 129 28869156 fliS PSPTO_1952 - flagellar protein FliS 1915 57.58 0 2139397..2139693 + 98 28869157 - PSPTO_1953 - hypothetical protein 1916 59.21 0 2139870..2141345 + 491 28869158 fleQ PSPTO_1954 - transcriptional regulator FleQ 1917 62.87 +1 2141576..2142682 + 368 28869159 fleS PSPTO_1955 - sensor histidine kinase FleS 1918 61.58 0 2142682..2144097 + 471 28869160 fleR PSPTO_1956 - sigma-54 dependent transcriptional regulator/response regulator FleR 1919 54.90 0 2144312..2144668 + 118 162533075 fliE PSPTO_1957 - flagellar hook-basal body protein FliE 1920 60.22 0 2144684..2146468 + 594 28869162 fliF PSPTO_1958 - flagellar MS-ring protein 1921 58.28 0 2146476..2147477 + 333 162533074 fliG PSPTO_1959 - flagellar motor switch protein G 58.61 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0