version 1.0
Pseudomonas syringae pv. tomato str. DC3000, complete genome - 1..6397126 5475 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1343 59.37 0 1522289..1523233 + 314 28868587 hrpR PSPTO_1379 - type III transcriptional regulator HrpR 1344 58.97 0 1523279..1524187 + 302 28868588 hrpS PSPTO_1380 - type III transcriptional regulator HrpS 1345 54.39 -1 1524281..1524622 + 113 28868589 hrpA1 PSPTO_1381 - type III helper protein HrpA1 1346 60.11 0 1524678..1525790 + 370 28868590 hrpZ1 PSPTO_1382 - type III helper protein HrpZ1 1347 58.13 0 1525818..1526192 + 124 28868591 hrpB PSPTO_1383 - type III secretion protein HrpB 1348 59.23 0 1526201..1527007 + 268 28868592 hrcJ PSPTO_1384 - type III secretion protein HrcJ 1349 63.47 +1 1527004..1527534 + 176 28868593 hrpD PSPTO_1385 - type III secretion protein HrpD 1350 63.40 +1 1527570..1528151 + 193 28868594 hrpE PSPTO_1386 - type III secretion protein HrpE 1351 54.22 -1 1528246..1528470 + 74 28868595 hrpF PSPTO_1387 - type III secretion protein HrpF 1352 63.66 +1 1528457..1528888 + 143 28868596 hrpG PSPTO_1388 - type III secretion protein HrpG 1353 57.95 0 1528890..1530989 + 699 162533078 hrcC PSPTO_1389 - outer-membrane type III secretion protein HrcC 1354 58.33 0 1530986..1531189 + 67 28868598 hrpT PSPTO_1390 - type III secretion protein HrpT 1355 56.39 0 1531192..1531551 + 119 28868599 hrpV PSPTO_1391 - negative regulator of hrp expression HrpV 1356 57.13 0 1532093..1533172 - 359 28868600 hrcU PSPTO_1392 - type III secretion protein HrcU 1357 60.88 0 1533169..1533963 - 264 28868601 hrcT PSPTO_1393 - type III secretion protein HrcT 1358 58.05 0 1533964..1534230 - 88 28868602 hrcS PSPTO_1394 - type III secretion protein HrcS 1359 58.04 0 1534238..1534840 - 200 162533077 hrcR PSPTO_1395 - type III secretion system protein 1360 60.63 0 1534888..1535301 - 137 28868604 hrcQb PSPTO_1396 - type III secretion protein HrcQb 1361 64.02 +1 1535291..1536007 - 238 28868605 hrcQa PSPTO_1397 - type III secretion protein HrcQa 1362 62.11 0 1536004..1536573 - 189 28868606 hrpP PSPTO_1398 - type III secretion protein HrpP 1363 57.72 0 1536580..1537026 - 148 28868607 hrpO PSPTO_1399 - type III secretion protein HrpO 1364 65.33 +1 1537029..1538378 - 449 28868608 hrcN PSPTO_1400 - type III secretion cytoplasmic ATPase HrcN 1365 62.44 0 1538375..1539367 - 330 28868609 hrpQ PSPTO_1401 - type III secretion protein HrpQ 1366 59.72 0 1539401..1541488 - 695 28868610 hrcV PSPTO_1402 - type III secretion protein HrcV 1367 59.35 0 1541488..1542594 - 368 28868611 hrpJ PSPTO_1403 - type III secretion protein HrpJ 1368 55.32 0 1542838..1543392 + 184 28868612 hrpL PSPTO_1404 - RNA polymerase sigma factor HrpL 1369 58.39 0 1543479..1545821 + 780 28868613 hrpK1 PSPTO_1405 - type III helper protein HrpK1 1370 55.46 0 1545896..1547296 + 466 28868614 hopB1 PSPTO_1406 - type III effector HopB1 1371 53.41 -1 1548470..1548718 + 82 90818607 - PSPTO_5622 - PSPTO5622 1372 63.98 +1 1548919..1549104 + 61 28868615 - PSPTO_1408 - hypothetical protein 1373 49.29 -2 1549288..1550133 + 281 28868616 - PSPTO_1409 - hypothetical protein 1374 53.48 -1 1550627..1551043 + 138 28868617 - PSPTO_1410 - exchangeable effector locus protein 1375 49.48 -2 1551198..1551773 - 191 28868618 - PSPTO_1411 - hypothetical protein 1376 62.44 0 1551979..1553043 + 354 28868619 queA PSPTO_1412 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1377 60.22 0 1553058..1554173 + 371 28868620 tgt PSPTO_1413 - queuine tRNA-ribosyltransferase 1378 55.65 0 1554227..1554562 + 111 28868621 yajC PSPTO_1414 - preprotein translocase subunit YajC 1379 59.18 0 1554625..1556493 + 622 28868622 secD PSPTO_1415 - preprotein translocase subunit SecD 1380 59.43 0 1556503..1557414 + 303 28868623 secF PSPTO_1416 - preprotein translocase subunit SecF 1381 58.33 0 1557523..1558062 + 179 28868624 - PSPTO_1417 - hypothetical protein 1382 54.07 -1 1558205..1559665 - 486 28868625 - PSPTO_1418 - ISPsy6, transposase 1383 62.25 0 1559737..1560552 - 271 28868626 suhB PSPTO_1419 - inositol-1-monophosphatase 1384 62.14 0 1560768..1561541 + 257 28868627 - PSPTO_1420 - RNA methyltransferase 1385 61.39 0 1561541..1562317 + 258 28868628 cysE PSPTO_1421 - serine O-acetyltransferase 1386 57.32 0 1562477..1562968 + 163 28868629 - PSPTO_1422 - rrf2 family protein 1387 58.11 0 1563013..1564227 + 404 28868630 iscS-2 PSPTO_1423 - cysteine desulfurase 1388 58.91 0 1564310..1564696 + 128 28868631 iscU PSPTO_1424 - scaffold protein 1389 57.10 0 1564739..1565062 + 107 28868632 iscA PSPTO_1425 - iron-binding protein IscA 1390 58.24 0 1565074..1565595 + 173 28868633 hscB PSPTO_1426 - co-chaperone HscB 1391 61.57 0 1565640..1567502 + 620 28868634 hscA PSPTO_1427 - chaperone protein HscA 1392 57.89 0 1567506..1567847 + 113 28868635 - PSPTO_1428 - ferredoxin, 2Fe-2S 1393 53.62 -1 1567856..1568062 + 68 28868636 - PSPTO_1429 - hypothetical protein 1394 55.63 0 1568159..1568584 + 141 28868637 ndk PSPTO_1430 - nucleoside diphosphate kinase 1395 57.01 0 1568618..1569766 + 382 28868638 - PSPTO_1431 - radical SAM protein 1396 56.13 0 1569793..1570551 + 252 28868639 pilF PSPTO_1432 - type IV pilus biogenesis protein PilF 1397 62.75 0 1570551..1571546 + 331 28868640 - PSPTO_1433 - hypothetical protein 1398 59.55 0 1571550..1572659 + 369 28868641 ispG PSPTO_1434 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1399 58.37 0 1572682..1573971 + 429 28868642 hisS PSPTO_1435 - histidyl-tRNA synthetase 1400 60.28 0 1574010..1574651 + 213 28868643 - PSPTO_1436 - hypothetical protein 1401 59.65 0 1574644..1575798 + 384 28868644 - PSPTO_1437 - PQQ repeat-containing protein 1402 58.37 0 1575936..1577405 + 489 28868645 engA PSPTO_1438 - GTP-binding protein EngA 1403 54.07 -1 1577530..1578990 - 486 28868646 - PSPTO_1439 - ISPsy6, transposase 1404 58.66 0 1579125..1580273 + 382 28868647 - PSPTO_1440 - putative aminotransferase 1405 59.22 0 1580261..1581052 + 263 28868648 - PSPTO_1441 - carbon-nitrogen family hydrolase 1406 58.10 0 1581091..1581627 - 178 28868649 - PSPTO_1442 - hypothetical protein 1407 58.51 0 1581671..1582540 - 289 28868650 bcpA PSPTO_1443 - carboxyphosphonoenolpyruvate phosphonomutase 1408 59.16 0 1582912..1584669 - 585 162533076 leuA PSPTO_1444 - 2-isopropylmalate synthase 1409 61.21 0 1584963..1585787 - 274 28868652 - PSPTO_1445 - M24/M37 family peptidase 1410 62.21 0 1585794..1587185 - 463 28868653 xseA PSPTO_1446 - exodeoxyribonuclease VII large subunit 1411 65.08 +1 1587200..1587388 + 62 28868654 - PSPTO_1447 - hypothetical protein 1412 59.93 0 1587464..1588012 + 182 28868655 - PSPTO_1448 - hypothetical protein 1413 60.41 0 1588107..1589576 + 489 28868656 guaB PSPTO_1449 - inositol-5-monophosphate dehydrogenase 1414 60.27 0 1589700..1591277 + 525 28868657 guaA PSPTO_1450 - bifunctional GMP synthase/glutamine amidotransferase protein 1415 51.18 -1 1592228..1593409 - 393 28868658 - PSPTO_1451 - hypothetical protein 1416 57.26 0 1593498..1593614 - 38 28868659 - PSPTO_1452 - hypothetical protein 1417 56.25 0 1593629..1594924 - 431 28868660 lsc-1 PSPTO_1453 - levansucrase 1418 57.98 0 1595545..1596534 - 329 28868661 - PSPTO_1454 - hypothetical protein 1419 52.31 -1 1598062..1600338 + 758 28868662 - PSPTO_1455 - hypothetical protein 1420 61.14 0 1600668..1602041 + 457 28868663 cumA PSPTO_1456 - multicopper oxidase 1421 63.92 +1 1602041..1602550 + 169 28868664 - PSPTO_1457 - cytidine/deoxycytidylate deaminase family protein 1422 58.86 0 1602547..1603917 - 456 28868665 - PSPTO_1458 - ligand-binding/transglycosylase domain-containing protein 1423 61.00 0 1604253..1608149 + 1298 28868666 purL PSPTO_1459 - phosphoribosylformylglycinamidine synthase 1424 56.73 0 1608155..1608466 + 103 28868667 - PSPTO_1460 - hypothetical protein 1425 53.11 -1 1608605..1609231 - 208 28868668 - PSPTO_1461 - hypothetical protein 1426 58.88 0 1609228..1609779 - 183 28868669 - PSPTO_1462 - mutT/nudix family protein 1427 57.14 0 1609794..1609940 + 48 28868670 - PSPTO_1463 - hypothetical protein 1428 59.46 0 1609930..1610526 + 198 28868671 - PSPTO_1464 - mutT/nudix family protein 1429 58.48 0 1610585..1611109 + 174 28868672 - PSPTO_1465 - hexapeptide repeat-containing transferase 1430 62.10 0 1611109..1611327 + 72 28868673 - PSPTO_1466 - hypothetical protein 1431 59.62 0 1611959..1612426 + 155 28868674 - PSPTO_1467 - hypothetical protein 1432 62.27 0 1612530..1613711 + 393 28868675 purT PSPTO_1468 - phosphoribosylglycinamide formyltransferase 2 1433 61.35 0 1613824..1615140 - 438 28868676 - PSPTO_1469 - major facilitator family transporter 1434 58.25 0 1615271..1616518 - 415 28868677 - PSPTO_1470 - CBS domain-containing protein 1435 60.76 0 1616531..1617343 - 270 28868678 - PSPTO_1471 - hypothetical protein 1436 60.35 0 1617559..1618935 + 458 28868679 ffh PSPTO_1472 - signal recognition particle protein Ffh 1437 56.59 0 1619184..1619441 + 85 28868680 rpsP PSPTO_1473 - 30S ribosomal protein S16 1438 54.44 -1 1619447..1619986 + 179 28868681 rimM PSPTO_1474 - 16S rRNA-processing protein 1439 57.10 0 1619992..1620744 + 250 28868682 trmD PSPTO_1475 - tRNA (guanine-N(1)-)-methyltransferase 1440 52.42 -1 1620789..1621139 + 116 28868683 rplS PSPTO_1476 - 50S ribosomal protein L19 1441 54.00 -1 1621273..1622733 - 486 28868684 - PSPTO_1477 - ISPsy6, transposase 1442 61.54 0 1622850..1623746 + 298 28868685 xerD PSPTO_1478 - site-specific tyrosine recombinase XerD 58.61 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0