version 1.0
Pseudomonas syringae pv. tomato str. DC3000, complete genome - 1..6397126 5475 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1305 57.89 0 1471584..1472552 - 322 28868549 - PSPTO_1341 - hypothetical protein 1306 53.54 -1 1472620..1473678 - 352 28868550 - PSPTO_1342 - hypothetical protein 1307 56.38 0 1473898..1475637 + 579 28868551 - PSPTO_1343 - hypothetical protein 1308 58.99 0 1475743..1476315 + 190 28868552 - PSPTO_1344 - hypothetical protein 1309 56.83 0 1476333..1477349 + 338 28868553 gnl PSPTO_1345 - gluconolactonase 1310 57.82 0 1477371..1478648 - 425 28868554 - PSPTO_1346 - sensory box protein 1311 61.32 0 1479036..1480382 + 448 28868555 - PSPTO_1347 - gluconate transporter family protein 1312 56.41 0 1480410..1482701 - 763 28868556 - PSPTO_1348 - sensory box protein 1313 61.99 0 1482921..1488389 - 1822 28868557 - PSPTO_1349 - hypothetical protein 1314 61.35 0 1488377..1489579 - 400 28868558 - PSPTO_1350 - hypothetical protein 1315 55.56 0 1489605..1489901 - 98 28868559 - PSPTO_1351 - hypothetical protein 1316 57.64 0 1490163..1490849 - 228 28868560 - PSPTO_1352 - GntR family transcriptional regulator 1317 60.86 0 1490846..1491241 - 131 28868561 - PSPTO_1353 - hypothetical protein 1318 61.80 0 1491241..1491918 - 225 28868562 - PSPTO_1354 - isochorismatase family protein 1319 63.09 +1 1491915..1493450 - 511 28868563 - PSPTO_1355 - ABC transporter, ATP-binding protein 1320 63.90 +1 1493453..1494139 - 228 28868564 - PSPTO_1356 - isochorismatase family protein 1321 62.64 0 1494145..1495161 - 338 28868565 amiE PSPTO_1357 - formamidase 1322 65.58 +1 1495186..1496106 - 306 28868566 - PSPTO_1358 - ABC transporter, permease protein 1323 64.51 +1 1496099..1497211 - 370 28868567 - PSPTO_1359 - ABC transporter, permease protein 1324 60.45 0 1497221..1498330 - 369 28868568 - PSPTO_1360 - bmp family protein 1325 63.18 +1 1498345..1500150 - 601 28868569 - PSPTO_1361 - amidase 1326 58.84 0 1500375..1500770 - 131 28868570 - PSPTO_1362 - hypothetical protein 1327 60.48 0 1500812..1502233 - 473 28868571 - PSPTO_1363 - sugar transporter family protein 1328 54.20 -1 1502395..1502811 + 138 28868572 - PSPTO_1364 - hypothetical protein 1329 57.74 0 1502901..1503527 + 208 28868573 gstA PSPTO_1365 - glutathione S-transferase 1330 53.09 -1 1503611..1503772 - 53 28868574 - PSPTO_1366 - hypothetical protein 1331 53.24 -1 1503935..1504381 + 148 28868575 - PSPTO_1367 - acetyltransferase 1332 54.17 -1 1504444..1504731 - 95 28868576 - PSPTO_1368 - putative lipoprotein 1333 55.00 0 1504948..1505427 + 159 28868577 shcN PSPTO_1369 - type III chaperone protein ShcN 1334 53.47 -1 1505441..1506493 + 350 28868578 hopN1 PSPTO_1370 - type III effector HopN1 1335 58.52 0 1506530..1507474 - 314 28868579 - PSPTO_1371 - effector locus protein 1336 60.99 0 1507846..1509306 + 486 28868580 hopAA1-1 PSPTO_1372 - type III effector HopAA1-1 1337 57.96 0 1509390..1510664 - 424 28868581 hrpW1 PSPTO_1373 - type III helper protein HrpW1 1338 57.17 0 1510970..1511464 + 164 28868582 shcM PSPTO_1374 - type III chaperone ShcM 1339 58.44 0 1511461..1513599 + 712 28868583 hopM1 PSPTO_1375 - type III effector HopM1 1340 56.57 0 1513672..1514067 + 131 28868584 shcE PSPTO_1376 - type III chaperone ShcE 1341 57.57 0 1514116..1519503 - 1795 28868585 avrE1 PSPTO_1377 - type III effector protein AvrE1 1342 61.96 0 1519724..1521211 + 495 28868586 hrpH PSPTO_1378 - membrane-bound lytic murein transglycosylase D 1343 59.37 0 1522289..1523233 + 314 28868587 hrpR PSPTO_1379 - type III transcriptional regulator HrpR 1344 58.97 0 1523279..1524187 + 302 28868588 hrpS PSPTO_1380 - type III transcriptional regulator HrpS 1345 54.39 -1 1524281..1524622 + 113 28868589 hrpA1 PSPTO_1381 - type III helper protein HrpA1 1346 60.11 0 1524678..1525790 + 370 28868590 hrpZ1 PSPTO_1382 - type III helper protein HrpZ1 1347 58.13 0 1525818..1526192 + 124 28868591 hrpB PSPTO_1383 - type III secretion protein HrpB 1348 59.23 0 1526201..1527007 + 268 28868592 hrcJ PSPTO_1384 - type III secretion protein HrcJ 1349 63.47 +1 1527004..1527534 + 176 28868593 hrpD PSPTO_1385 - type III secretion protein HrpD 1350 63.40 +1 1527570..1528151 + 193 28868594 hrpE PSPTO_1386 - type III secretion protein HrpE 1351 54.22 -1 1528246..1528470 + 74 28868595 hrpF PSPTO_1387 - type III secretion protein HrpF 1352 63.66 +1 1528457..1528888 + 143 28868596 hrpG PSPTO_1388 - type III secretion protein HrpG 1353 57.95 0 1528890..1530989 + 699 162533078 hrcC PSPTO_1389 - outer-membrane type III secretion protein HrcC 1354 58.33 0 1530986..1531189 + 67 28868598 hrpT PSPTO_1390 - type III secretion protein HrpT 1355 56.39 0 1531192..1531551 + 119 28868599 hrpV PSPTO_1391 - negative regulator of hrp expression HrpV 1356 57.13 0 1532093..1533172 - 359 28868600 hrcU PSPTO_1392 - type III secretion protein HrcU 1357 60.88 0 1533169..1533963 - 264 28868601 hrcT PSPTO_1393 - type III secretion protein HrcT 1358 58.05 0 1533964..1534230 - 88 28868602 hrcS PSPTO_1394 - type III secretion protein HrcS 1359 58.04 0 1534238..1534840 - 200 162533077 hrcR PSPTO_1395 - type III secretion system protein 1360 60.63 0 1534888..1535301 - 137 28868604 hrcQb PSPTO_1396 - type III secretion protein HrcQb 1361 64.02 +1 1535291..1536007 - 238 28868605 hrcQa PSPTO_1397 - type III secretion protein HrcQa 1362 62.11 0 1536004..1536573 - 189 28868606 hrpP PSPTO_1398 - type III secretion protein HrpP 1363 57.72 0 1536580..1537026 - 148 28868607 hrpO PSPTO_1399 - type III secretion protein HrpO 1364 65.33 +1 1537029..1538378 - 449 28868608 hrcN PSPTO_1400 - type III secretion cytoplasmic ATPase HrcN 1365 62.44 0 1538375..1539367 - 330 28868609 hrpQ PSPTO_1401 - type III secretion protein HrpQ 1366 59.72 0 1539401..1541488 - 695 28868610 hrcV PSPTO_1402 - type III secretion protein HrcV 1367 59.35 0 1541488..1542594 - 368 28868611 hrpJ PSPTO_1403 - type III secretion protein HrpJ 1368 55.32 0 1542838..1543392 + 184 28868612 hrpL PSPTO_1404 - RNA polymerase sigma factor HrpL 1369 58.39 0 1543479..1545821 + 780 28868613 hrpK1 PSPTO_1405 - type III helper protein HrpK1 1370 55.46 0 1545896..1547296 + 466 28868614 hopB1 PSPTO_1406 - type III effector HopB1 1371 53.41 -1 1548470..1548718 + 82 90818607 - PSPTO_5622 - PSPTO5622 1372 63.98 +1 1548919..1549104 + 61 28868615 - PSPTO_1408 - hypothetical protein 1373 49.29 -2 1549288..1550133 + 281 28868616 - PSPTO_1409 - hypothetical protein 1374 53.48 -1 1550627..1551043 + 138 28868617 - PSPTO_1410 - exchangeable effector locus protein 1375 49.48 -2 1551198..1551773 - 191 28868618 - PSPTO_1411 - hypothetical protein 1376 62.44 0 1551979..1553043 + 354 28868619 queA PSPTO_1412 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1377 60.22 0 1553058..1554173 + 371 28868620 tgt PSPTO_1413 - queuine tRNA-ribosyltransferase 1378 55.65 0 1554227..1554562 + 111 28868621 yajC PSPTO_1414 - preprotein translocase subunit YajC 1379 59.18 0 1554625..1556493 + 622 28868622 secD PSPTO_1415 - preprotein translocase subunit SecD 1380 59.43 0 1556503..1557414 + 303 28868623 secF PSPTO_1416 - preprotein translocase subunit SecF 1381 58.33 0 1557523..1558062 + 179 28868624 - PSPTO_1417 - hypothetical protein 1382 54.07 -1 1558205..1559665 - 486 28868625 - PSPTO_1418 - ISPsy6, transposase 1383 62.25 0 1559737..1560552 - 271 28868626 suhB PSPTO_1419 - inositol-1-monophosphatase 1384 62.14 0 1560768..1561541 + 257 28868627 - PSPTO_1420 - RNA methyltransferase 1385 61.39 0 1561541..1562317 + 258 28868628 cysE PSPTO_1421 - serine O-acetyltransferase 1386 57.32 0 1562477..1562968 + 163 28868629 - PSPTO_1422 - rrf2 family protein 1387 58.11 0 1563013..1564227 + 404 28868630 iscS-2 PSPTO_1423 - cysteine desulfurase 1388 58.91 0 1564310..1564696 + 128 28868631 iscU PSPTO_1424 - scaffold protein 1389 57.10 0 1564739..1565062 + 107 28868632 iscA PSPTO_1425 - iron-binding protein IscA 1390 58.24 0 1565074..1565595 + 173 28868633 hscB PSPTO_1426 - co-chaperone HscB 1391 61.57 0 1565640..1567502 + 620 28868634 hscA PSPTO_1427 - chaperone protein HscA 1392 57.89 0 1567506..1567847 + 113 28868635 - PSPTO_1428 - ferredoxin, 2Fe-2S 1393 53.62 -1 1567856..1568062 + 68 28868636 - PSPTO_1429 - hypothetical protein 1394 55.63 0 1568159..1568584 + 141 28868637 ndk PSPTO_1430 - nucleoside diphosphate kinase 1395 57.01 0 1568618..1569766 + 382 28868638 - PSPTO_1431 - radical SAM protein 1396 56.13 0 1569793..1570551 + 252 28868639 pilF PSPTO_1432 - type IV pilus biogenesis protein PilF 1397 62.75 0 1570551..1571546 + 331 28868640 - PSPTO_1433 - hypothetical protein 1398 59.55 0 1571550..1572659 + 369 28868641 ispG PSPTO_1434 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1399 58.37 0 1572682..1573971 + 429 28868642 hisS PSPTO_1435 - histidyl-tRNA synthetase 1400 60.28 0 1574010..1574651 + 213 28868643 - PSPTO_1436 - hypothetical protein 1401 59.65 0 1574644..1575798 + 384 28868644 - PSPTO_1437 - PQQ repeat-containing protein 1402 58.37 0 1575936..1577405 + 489 28868645 engA PSPTO_1438 - GTP-binding protein EngA 1403 54.07 -1 1577530..1578990 - 486 28868646 - PSPTO_1439 - ISPsy6, transposase 1404 58.66 0 1579125..1580273 + 382 28868647 - PSPTO_1440 - putative aminotransferase 58.61 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0