version 1.0
Pseudomonas syringae pv. tomato str. DC3000, complete genome - 1..6397126 5475 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1206 62.01 0 1360516..1361997 - 493 28868450 algE PSPTO_1239 - alginate biosynthesis protein AlgE 1207 61.50 0 1361994..1363406 - 470 28868451 algK PSPTO_1240 - alginate biosynthesis protein AlgK 1208 60.36 0 1363409..1364581 - 390 28868452 - PSPTO_1241 - alginate biosynthesis protein Alg44 1209 58.77 0 1364622..1366103 - 493 28868453 - PSPTO_1242 - alginate biosynthesis protein Alg8 1210 57.63 0 1366206..1367522 - 438 28868454 algD PSPTO_1243 - GDP-mannose 6-dehydrogenase AlgD 1211 58.46 0 1368333..1369112 - 259 28868455 - PSPTO_1244 - hypothetical protein 1212 60.55 0 1369648..1370481 + 277 28868456 - PSPTO_1245 - polysaccharide deacetylase family protein 1213 56.49 0 1370776..1372170 + 464 28868457 - PSPTO_1246 - PhoH-like protein 1214 58.44 0 1372312..1372797 + 161 28868458 moaC PSPTO_1247 - molybdenum cofactor biosynthesis protein C 1215 56.50 0 1372794..1373039 + 81 28868459 moaD PSPTO_1248 - molybdenum cofactor biosynthesis protein D 1216 61.30 0 1373042..1373488 + 148 28868460 moaE PSPTO_1249 - molybdenum cofactor biosynthesis protein E 1217 56.87 0 1373711..1374394 + 227 28868461 - PSPTO_1250 - CsgG family protein 1218 56.35 0 1374416..1374793 + 125 28868462 - PSPTO_1251 - hypothetical protein 1219 60.94 0 1374790..1375452 + 220 28868463 - PSPTO_1252 - putative lipoprotein 1220 60.89 0 1375533..1376726 - 397 162533080 rhlB PSPTO_1253 - ATP-dependent RNA helicase RhlB 1221 60.45 0 1377109..1377768 - 219 28868465 estA PSPTO_1254 - carboxylesterase 1222 58.02 0 1378253..1379281 + 342 28868466 - PSPTO_1255 - amino acid ABC transporter, periplasmic amino acid-binding protein 1223 57.19 0 1379352..1380533 + 393 28868467 - PSPTO_1256 - amino acid ABC transporter, permease protein 1224 58.38 0 1380544..1381641 + 365 28868468 - PSPTO_1257 - amino acid ABC transporter, permease protein 1225 57.52 0 1381652..1382416 + 254 28868469 - PSPTO_1258 - amino acid ABC transporter, ATP-binding protein 1226 50.28 -2 1382406..1382582 - 58 28868470 - PSPTO_1259 - hypothetical protein 1227 63.90 +1 1382572..1383801 + 409 28868471 - PSPTO_1260 - cyanate MFS transporter 1228 61.71 0 1383842..1384366 + 174 28868472 - PSPTO_1261 - hypothetical protein 1229 61.32 0 1384359..1384676 + 105 28868473 - PSPTO_1262 - GIY-YIG nuclease superfamily protein 1230 60.45 0 1384741..1385673 + 310 28868474 - PSPTO_1263 - hypothetical protein 1231 57.75 0 1385856..1386068 - 70 28868475 nrdH PSPTO_1264 - glutaredoxin NrdH 1232 57.98 0 1386213..1387214 - 333 28868476 - PSPTO_1265 - nucleoid-associated protein NdpA 1233 51.77 -1 1387607..1387888 + 93 28868477 - PSPTO_1266 - HU family DNA-binding protein 1234 61.31 0 1388286..1389311 - 341 162533079 - PSPTO_1267 - putative SAM-dependent methyltransferase 1235 60.84 0 1389375..1392221 - 948 28868479 valS PSPTO_1268 - valyl-tRNA synthetase 1236 58.92 0 1392581..1393006 - 141 28868480 - PSPTO_1269 - hypothetical protein 1237 63.40 +1 1393014..1393442 - 142 28868481 holC PSPTO_1270 - DNA polymerase III subunit chi 1238 61.03 0 1393501..1394991 - 496 28868482 pepA PSPTO_1271 - leucyl aminopeptidase 1239 60.02 0 1395310..1396437 + 375 28868483 - PSPTO_1272 - hypothetical protein 1240 60.55 0 1396424..1397485 + 353 28868484 - PSPTO_1273 - hypothetical protein 1241 53.52 -1 1397612..1397824 - 70 28868485 - PSPTO_1274 - cold shock domain-contain protein 1242 62.11 0 1398228..1399457 - 409 28868486 gcvT-2 PSPTO_1275 - glycine cleavage system T protein 1243 63.18 +1 1399420..1402284 - 954 28868487 gcvP PSPTO_1276 - glycine dehydrogenase 1244 59.90 0 1402295..1402678 - 127 28868488 gcvH-2 PSPTO_1277 - glycine cleavage system protein H 1245 58.97 0 1402983..1405100 - 705 28868489 - PSPTO_1278 - sensory box protein/response regulator 1246 61.43 0 1407395..1408903 - 502 28868490 - PSPTO_1280 - transcriptional regulator TyrR, putative 1247 57.70 0 1409228..1409584 - 118 28868491 - PSPTO_1281 - hypothetical protein 1248 58.17 0 1409689..1410147 - 152 28868492 - PSPTO_1282 - hypothetical protein 1249 59.22 0 1410144..1410908 - 254 28868493 - PSPTO_1283 - heme oxygenase, putative 1250 61.73 0 1410889..1413462 - 857 28868494 - PSPTO_1284 - TonB-dependent outer membrane heme receptor 1251 63.36 +1 1413583..1414488 - 301 28868495 - PSPTO_1285 - regulatory protein, putative 1252 59.67 0 1414616..1415158 - 180 28868496 - PSPTO_1286 - RNA polymerase sigma-70 family protein 1253 60.48 0 1415258..1416259 - 333 28868497 gap-1 PSPTO_1287 - glyceraldehyde 3-phosphate dehydrogenase, type I 1254 60.26 0 1416479..1418305 + 608 28868498 edd PSPTO_1288 - phosphogluconate dehydratase 1255 62.42 0 1418302..1419267 + 321 28868499 glk PSPTO_1289 - glucokinase 1256 60.03 0 1419318..1420055 + 245 28868500 - PSPTO_1290 - DNA-binding response regulator 1257 61.76 0 1420117..1421523 + 468 28868501 - PSPTO_1291 - sensor histidine kinase 1258 57.58 0 1421695..1422981 + 428 28868502 - PSPTO_1292 - glucose ABC transporter, periplasmic glucose-binding protein, putative 1259 58.86 0 1423086..1423994 + 302 28868503 - PSPTO_1293 - glucose ABC transporter, permease protein, putative 1260 57.80 0 1423987..1424832 + 281 28868504 - PSPTO_1294 - glucose ABC transporter, permease protein, putative 1261 58.91 0 1424835..1425995 + 386 28868505 gltK PSPTO_1295 - glucose ABC transporter, ATP-binding protein 1262 56.17 0 1426129..1427490 + 453 28868506 oprB PSPTO_1296 - porin B 1263 54.81 0 1427498..1427632 + 44 28868507 - PSPTO_1297 - hypothetical protein 1264 63.36 +1 1427604..1428479 + 291 28868508 - PSPTO_1298 - hypothetical protein 1265 61.94 0 1428566..1429432 - 288 28868509 hexR PSPTO_1299 - DNA-binding transcriptional regulator HexR 1266 59.52 0 1429651..1431120 + 489 28868510 zwf-1 PSPTO_1300 - glucose-6-phosphate 1-dehydrogenase 1267 65.41 +1 1431107..1431820 + 237 28868511 pgl PSPTO_1301 - 6-phosphogluconolactonase 1268 61.78 0 1431849..1432523 + 224 28868512 eda-1 PSPTO_1302 - keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase 1269 59.17 0 1432654..1432893 - 79 28868513 - PSPTO_1303 - hypothetical protein 1270 53.72 -1 1433113..1433583 + 156 28868514 - PSPTO_1304 - hypothetical protein 1271 58.38 0 1433678..1435186 - 502 28868515 - PSPTO_1305 - GGDEF domain-containing protein 1272 61.68 0 1435390..1436754 - 454 28868516 - PSPTO_1306 - heavy metal sensor histidine kinase 1273 62.83 +1 1436744..1437421 - 225 28868517 - PSPTO_1307 - DNA-binding heavy metal response regulator 1274 62.80 +1 1437432..1440536 - 1034 28868518 - PSPTO_1308 - AcrB/AcrD/AcrF family protein 1275 61.35 0 1440533..1441699 - 388 28868519 - PSPTO_1309 - HlyD family secretion protein 1276 54.19 -1 1441968..1442945 + 325 28868520 - PSPTO_1310 - ISPssy, transposase 1277 55.29 0 1443185..1443562 + 125 28868521 - PSPTO_1311 - hypothetical protein 1278 54.70 0 1443875..1444459 + 194 28868522 - PSPTO_1312 - fimbral biosynthesis protein 1279 54.98 0 1444523..1445275 + 250 28868523 - PSPTO_1313 - pili assembly chaperone 1280 54.19 -1 1446346..1447323 - 325 28868524 - PSPTO_1315 - ISPssy, transposase 1281 60.79 0 1449166..1449948 + 260 28868525 - PSPTO_1317 - fimbral chaperone protein 1282 56.86 0 1449950..1450948 + 332 28868526 - PSPTO_1318 - hypothetical protein 1283 59.38 0 1450996..1451283 + 95 28868527 - PSPTO_1319 - hypothetical protein 1284 58.30 0 1451301..1452053 - 250 28868528 - PSPTO_1320 - hypothetical protein 1285 60.90 0 1452046..1452201 + 51 28868529 - PSPTO_1321 - hypothetical protein 1286 62.66 0 1452168..1452641 - 157 28868530 - PSPTO_1322 - acetyltransferase 1287 58.31 0 1452704..1453648 - 314 28868531 - PSPTO_1323 - chemotaxis protein CheV, putative 1288 59.02 0 1454243..1454752 + 169 28868532 dsbB PSPTO_1324 - disulfide bond formation protein B 1289 53.82 -1 1455218..1456159 + 313 28868533 cyoA PSPTO_1325 - cytochrome o ubiquinol oxidase, subunit II 1290 57.77 0 1456163..1458175 + 670 28868534 cyoB PSPTO_1326 - cytochrome o ubiquinol oxidase, subunit I 1291 57.66 0 1458179..1458811 + 210 28868535 cyoC PSPTO_1327 - cytochrome o ubiquinol oxidase, subunit III 1292 52.25 -1 1458811..1459143 + 110 28868536 cyoD PSPTO_1328 - cytochrome o ubiquinol oxidase, subunit IV 1293 55.41 0 1459154..1460041 + 295 28868537 cyoE PSPTO_1329 - protoheme IX farnesyltransferase 1294 56.27 0 1460299..1461183 + 294 28868538 - PSPTO_1330 - glycosyl transferase, group 2 family protein 1295 56.63 0 1461281..1461868 + 195 28868539 - PSPTO_1331 - acetyltransferase 1296 58.73 0 1462008..1463027 + 339 28868540 ilvE PSPTO_1332 - branched-chain amino acid aminotransferase 1297 58.33 0 1463091..1464086 - 331 28868541 - PSPTO_1333 - hypothetical protein 1298 59.77 0 1464236..1465888 - 550 28868542 - PSPTO_1334 - methyl-accepting chemotaxis protein 1299 55.68 0 1466008..1466799 - 263 28868543 - PSPTO_1335 - cyclohexadienyl dehydratase, putative 1300 57.24 0 1466973..1467269 + 98 28868544 - PSPTO_1336 - ArsR family transcriptional regulator 1301 61.13 0 1467326..1468336 + 336 28868545 - PSPTO_1337 - oxidoreductase, zinc-binding 1302 59.73 0 1468578..1469096 + 172 28868546 sodC PSPTO_1338 - superoxide dismutase, Cu-Zn 1303 59.09 0 1469164..1470351 - 395 28868547 - PSPTO_1339 - hypothetical protein 1304 57.66 0 1470549..1471325 - 258 28868548 - PSPTO_1340 - carbonic anhydrase 1305 57.89 0 1471584..1472552 - 322 28868549 - PSPTO_1341 - hypothetical protein 58.61 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0