version 1.0
Pseudomonas syringae pv. tomato str. DC3000, complete genome - 1..6397126 5475 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1090 61.60 0 1232891..1233679 - 262 28868334 - PSPTO_1119 - short chain dehydrogenase/reductase family oxidoreductase 1091 58.39 0 1233676..1234098 - 140 28868335 - PSPTO_1120 - hypothetical protein 1092 60.18 0 1234091..1235539 - 482 28868336 phrB PSPTO_1121 - deoxyribodipyrimidine photolyase 1093 62.93 +1 1235549..1236457 - 302 28868337 - PSPTO_1122 - MerR family transcriptional regulator 1094 58.10 0 1236463..1237419 - 318 28868338 - PSPTO_1123 - hypothetical protein 1095 56.10 0 1237618..1237740 - 40 28868339 - PSPTO_1124 - hypothetical protein 1096 58.33 0 1237715..1237930 - 71 28868340 - PSPTO_1125 - hypothetical protein 1097 64.54 +1 1237927..1238913 - 328 28868341 - PSPTO_1126 - amine oxidase, flavin-containing 1098 60.13 0 1239201..1240103 + 300 28868342 - PSPTO_1127 - hypothetical protein 1099 58.46 0 1240127..1241149 + 340 28868343 hemH PSPTO_1128 - ferrochelatase 1100 60.11 0 1241259..1242479 - 406 28868344 uraA PSPTO_1129 - uracil transporter 1101 60.56 0 1242541..1243179 - 212 28868345 upp PSPTO_1130 - uracil phosphoribosyltransferase 1102 59.50 0 1243387..1243944 + 185 28868346 hpt PSPTO_1131 - hypoxanthine-guanine phosphoribosyltransferase 1103 58.38 0 1244010..1244504 + 164 28868347 - PSPTO_1132 - hypothetical protein 1104 58.74 0 1245042..1245773 - 243 28868348 - PSPTO_1133 - amino acid ABC transporter, permease protein 1105 58.39 0 1245872..1246693 - 273 28868349 - PSPTO_1134 - amino acid ABC transporter, periplasmic amino acid-binding protein 1106 63.43 +1 1246804..1247700 + 298 28868350 - PSPTO_1135 - homocysteine S-methyltransferase family protein 1107 59.11 0 1247783..1249291 - 502 28868351 mqo PSPTO_1136 - malate:quinone oxidoreductase 1108 61.26 0 1249976..1250086 + 36 28868352 - PSPTO_1137 - hypothetical protein 1109 61.00 0 1250473..1251054 + 193 28868353 - PSPTO_1138 - putative lipoprotein 1110 54.76 0 1251135..1251386 - 83 28868354 - PSPTO_1139 - hypothetical protein 1111 59.88 0 1251599..1252762 - 387 28868355 - PSPTO_1140 - hypothetical protein 1112 56.83 0 1252869..1253051 + 60 28868356 - PSPTO_1141 - hypothetical protein 1113 60.15 0 1253051..1253311 + 86 28868357 - PSPTO_1142 - hypothetical protein 1114 63.17 +1 1253340..1253969 + 209 28868358 - PSPTO_1143 - hypothetical protein 1115 57.14 0 1254153..1254971 + 272 28868359 - PSPTO_1144 - putative lipoprotein 1116 60.85 0 1255028..1255612 - 194 28868360 - PSPTO_1145 - hypothetical protein 1117 61.76 0 1255859..1256857 - 332 28868361 rsmC PSPTO_1146 - ribosomal RNA small subunit methyltransferase C 1118 62.88 +1 1257094..1257726 + 210 28868362 - PSPTO_1147 - amino acid transporter LysE 1119 58.59 0 1257917..1259599 + 560 28868363 alkK PSPTO_1148 - acyl-CoA synthetase 1120 59.70 0 1259909..1261846 + 645 28868364 - PSPTO_1149 - hypothetical protein 1121 59.61 0 1261851..1263239 + 462 28868365 - PSPTO_1150 - hypothetical protein 1122 62.53 0 1263491..1266223 + 910 28868366 - PSPTO_1151 - LuxR family transcriptional regulator 1123 58.75 0 1266241..1267428 - 395 28868367 - PSPTO_1152 - HDIG domain-containing protein 1124 62.62 0 1267728..1268270 - 180 28868368 - PSPTO_1153 - NAD(P)H-flavin oxidoreductase 1125 62.05 0 1268283..1269062 - 259 28868369 - PSPTO_1154 - alpha/beta fold family hydrolase 1126 59.11 0 1269120..1269503 - 127 28868370 - PSPTO_1155 - endoribonuclease L-PSP family protein 1127 61.40 0 1269514..1270254 - 246 28868371 - PSPTO_1156 - isochorismatase family protein 1128 59.03 0 1270254..1271405 - 383 28868372 - PSPTO_1157 - luciferase family protein 1129 61.34 0 1271668..1272324 + 218 28868373 - PSPTO_1158 - TetR family transcriptional regulator 1130 61.17 0 1272558..1273649 + 363 28868374 - PSPTO_1159 - bmp family protein 1131 63.43 +1 1273646..1275157 + 503 28868375 - PSPTO_1160 - ABC transporter, ATP-binding protein 1132 59.49 0 1275150..1275344 + 64 28868376 - PSPTO_1161 - hypothetical protein 1133 59.86 0 1277310..1277999 + 229 28868377 - PSPTO_1164 - ompA family protein 1134 54.04 -1 1278328..1279428 + 366 28868378 - PSPTO_1165 - hypothetical protein 1135 54.19 -1 1279469..1280446 + 325 28868379 - PSPTO_1166 - ISPssy, transposase 1136 44.28 -2 1281800..1282393 + 197 28868380 - PSPTO_1167 - hypothetical protein 1137 58.44 0 1282914..1283837 - 307 28868381 - PSPTO_1168 - acyltransferase family protein 1138 61.74 0 1283902..1285992 - 696 28868382 pta PSPTO_1169 - phosphate acetyltransferase 1139 56.58 0 1286070..1286297 - 75 28868383 - PSPTO_1170 - hypothetical protein 1140 58.44 0 1286390..1286875 + 161 28868384 - PSPTO_1171 - peptidyl-prolyl cis-trans isomerase, FKBP-type 1141 57.26 0 1287005..1287493 + 162 28868385 - PSPTO_1172 - glutathione peroxidase family protein 1142 60.51 0 1287676..1288779 + 367 28868386 - PSPTO_1173 - oxidoreductase, FAD/FMN-binding 1143 61.30 0 1288748..1289959 - 403 28868387 - PSPTO_1174 - glycosyl transferase, group 1 family protein 1144 51.93 -1 1290659..1291255 + 198 28868388 - PSPTO_1175 - hypothetical protein 1145 51.59 -1 1291353..1291697 - 114 28868389 - PSPTO_1176 - hypothetical protein 1146 59.84 0 1291883..1292644 - 253 28868390 cysZ PSPTO_1177 - putative sulfate transport protein CysZ 1147 60.33 0 1293002..1293964 + 320 28868391 trxB PSPTO_1178 - thioredoxin reductase 1148 58.48 0 1294195..1294536 - 113 28868392 hopJ1 PSPTO_1179 - type III effector HopJ1 1149 57.24 0 1294529..1294825 - 98 28868393 - PSPTO_1180 - hypothetical protein 1150 57.26 0 1294869..1295240 - 123 28868394 folB-2 PSPTO_1181 - D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase 1151 54.79 0 1295240..1295803 - 187 28868395 folE-1 PSPTO_1182 - GTP cyclohydrolase I 1152 60.06 0 1295825..1296535 - 236 28868396 - PSPTO_1183 - short chain dehydrogenase 1153 62.30 0 1296770..1297342 - 190 28868397 - PSPTO_1184 - hypothetical protein 1154 55.94 0 1297494..1298099 - 201 28868398 - PSPTO_1185 - hypothetical protein 1155 62.03 0 1298287..1298739 + 150 28868399 - PSPTO_1186 - flavodoxin 1156 61.45 0 1298852..1299772 + 306 28868400 - PSPTO_1187 - short chain dehydrogenase/reductase family oxidoreductase 1157 54.19 -1 1299927..1300904 + 325 28868401 - PSPTO_1188 - ISPssy, transposase 1158 56.31 0 1301655..1303208 - 517 28868402 - PSPTO_1189 - ISPsy5, transposase 1159 48.33 -2 1303226..1303585 - 119 28868403 - PSPTO_1190 - ISPsy5, Orf1 1160 62.31 0 1303986..1304789 - 267 28868404 - PSPTO_1191 - hypothetical protein 1161 62.63 0 1304872..1305615 - 247 28868405 - PSPTO_1192 - hypothetical protein 1162 62.80 +1 1305776..1307740 - 654 28868406 - PSPTO_1193 - hypothetical protein 1163 60.25 0 1307737..1309857 - 706 28868407 nfrB PSPTO_1194 - bacteriophage N4 adsorption protein B 1164 63.63 +1 1309870..1312011 - 713 28868408 - PSPTO_1195 - hypothetical protein 1165 60.75 0 1312251..1313501 - 416 28868409 - PSPTO_1196 - UDP-N-acetylglucosamine 2-epimerase 1166 56.93 0 1314205..1314471 - 88 28868410 - PSPTO_1197 - hypothetical protein 1167 56.91 0 1314528..1314650 - 40 28868411 - PSPTO_1198 - hypothetical protein 1168 45.65 -2 1314638..1314775 - 45 28868412 - PSPTO_1199 - hypothetical protein 1169 57.06 0 1314899..1315387 + 162 28868413 - PSPTO_1200 - hypothetical protein 1170 62.16 0 1315456..1315788 - 110 28868414 - PSPTO_1201 - putative lipoprotein 1171 58.56 0 1316033..1316365 - 110 28868415 - PSPTO_1202 - hypothetical protein 1172 58.75 0 1316530..1317072 + 180 28868416 - PSPTO_1203 - RNA polymerase sigma-70 family protein 1173 62.31 0 1317069..1318031 + 320 28868417 - PSPTO_1204 - regulatory protein, putative 1174 55.71 0 1318123..1318551 - 142 28868418 - PSPTO_1205 - ribosomal subunit interface protein, putative 1175 60.75 0 1318800..1321301 + 833 28868419 - PSPTO_1206 - TonB-dependent siderophore receptor, putative 1176 60.96 0 1321452..1323800 - 782 28868420 - PSPTO_1207 - iron(III) dicitrate transport protein fecA 1177 65.64 +1 1324328..1325305 - 325 28868421 - PSPTO_1208 - regulatory protein, putative 1178 62.52 0 1325302..1325808 - 168 28868422 - PSPTO_1209 - RNA polymerase sigma factor 1179 63.77 +1 1326007..1326351 + 114 28868423 - PSPTO_1210 - hypothetical protein 1180 60.86 0 1326348..1327913 + 521 28868424 - PSPTO_1211 - hypothetical protein 1181 62.46 0 1327913..1328245 + 110 28868425 - PSPTO_1212 - hypothetical protein 1182 62.90 +1 1328234..1329109 - 291 28868426 - PSPTO_1213 - AraC family transcriptional regulator 1183 60.47 0 1329246..1330148 + 300 28868427 - PSPTO_1214 - membrane protein 1184 60.92 0 1330200..1331174 - 324 28868428 - PSPTO_1215 - D-isomer specific 2-hydroxyacid dehydrogenase family protein 1185 63.08 +1 1331262..1332209 - 315 28868429 - PSPTO_1216 - LysR family transcriptional regulator 1186 63.99 +1 1332394..1333890 + 498 28868430 - PSPTO_1217 - outer membrane efflux protein 1187 62.41 0 1333887..1336073 + 728 28868431 - PSPTO_1218 - fusaric acid resistance protein, putative 1188 56.72 0 1336058..1336258 + 66 28868432 - PSPTO_1219 - hypothetical protein 1189 60.63 0 1336284..1337144 + 286 28868433 - PSPTO_1220 - fusaric acid resistance protein, putative 58.61 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0