version 1.0
Pseudomonas syringae pv. tomato str. DC3000, complete genome - 1..6397126 5475 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1014 63.64 +1 1140091..1141347 + 418 28868258 aroA PSPTO_1041 - 3-phosphoshikimate 1-carboxyvinyltransferase 1015 61.24 0 1141370..1142032 - 220 28868259 - PSPTO_1042 - transcriptional activator ChrR 1016 56.65 0 1142032..1142640 - 202 28868260 - PSPTO_1043 - RNA polymerase sigma factor RpoE 1017 55.56 0 1143054..1143233 - 59 28868261 - PSPTO_1044 - hypothetical protein 1018 54.07 -1 1143628..1144032 - 134 28868262 - PSPTO_1045 - virulence-associated protein, putative 1019 51.95 -1 1144032..1144262 - 76 28868263 - PSPTO_1046 - virulence-associated protein, putative 1020 63.38 +1 1144377..1145258 - 293 28868264 - PSPTO_1047 - hypothetical protein 1021 63.79 +1 1145233..1146204 - 323 28868265 - PSPTO_1048 - hypothetical protein 1022 60.42 0 1146288..1147568 - 426 28868266 dctM PSPTO_1049 - TRAP dicarboxylate transporter, DctM subunit 1023 59.47 0 1147569..1148096 - 175 28868267 - PSPTO_1050 - TRAP dicarboxylate transporter, DctQ subunit, putative 1024 58.87 0 1148160..1149185 - 341 28868268 dctP PSPTO_1051 - TRAP dicarboxylate transporter, DctP subunit 1025 60.90 0 1149242..1150126 - 294 28868269 - PSPTO_1052 - senescence marker protein-30 family protein 1026 59.90 0 1150183..1151010 - 275 28868270 - PSPTO_1053 - hypothetical protein 1027 58.87 0 1151189..1152457 - 422 28868271 - PSPTO_1054 - OprD family outer membrane porin 1028 52.97 -1 1152451..1152669 + 72 28868272 - PSPTO_1055 - hypothetical protein 1029 57.91 0 1152922..1153686 + 254 28868273 - PSPTO_1056 - short chain dehydrogenase/reductase family oxidoreductase 1030 55.96 0 1153738..1154148 - 136 28868274 - PSPTO_1057 - hypothetical protein 1031 52.92 -1 1154148..1154387 - 79 28868275 - PSPTO_1058 - hypothetical protein 1032 59.58 0 1154539..1156428 - 629 28868276 - PSPTO_1059 - methyl-accepting chemotaxis protein 1033 51.39 -1 1156430..1156573 + 47 28868277 - PSPTO_1060 - hypothetical protein 1034 57.42 0 1156819..1158699 + 626 28868278 - PSPTO_1061 - methyl-accepting chemotaxis protein 1035 53.41 -1 1158828..1159091 - 87 28868279 - PSPTO_1062 - hypothetical protein 1036 55.35 0 1162781..1163902 - 373 28868280 - PSPTO_1065 - DnaJ domain-containing protein 1037 61.08 0 1164246..1166303 + 685 28868281 - PSPTO_1066 - methyl-accepting chemotaxis protein 1038 54.44 -1 1166480..1167493 + 337 28868282 - PSPTO_1067 - glycosyl transferase, group 2 family protein 1039 51.99 -1 1167577..1169136 - 519 28868283 - PSPTO_1068 - hypothetical protein 1040 46.62 -2 1169280..1169678 - 132 28868284 - PSPTO_1069 - hypothetical protein 1041 53.84 -1 1169689..1170639 - 316 28868285 - PSPTO_1070 - lipopolysaccharide biosynthesis protein 1042 53.84 -1 1170626..1171576 - 316 28868286 - PSPTO_1071 - glycosyl transferase, group 2 family protein 1043 56.00 0 1171573..1172688 - 371 28868287 - PSPTO_1072 - aminotransferase 1044 53.01 -1 1172691..1174586 - 631 28868288 - PSPTO_1073 - hypothetical protein 1045 52.45 -1 1174632..1179317 - 1561 28868289 - PSPTO_1074 - glycosyl transferase, group 2 family protein 1046 55.02 0 1179310..1180674 - 454 28868290 - PSPTO_1075 - O-antigen ABC transporter, ATP-binding protein, putative 1047 57.13 0 1180664..1181491 - 275 28868291 - PSPTO_1076 - O-antigen ABC transporter, permease protein, putative 1048 55.31 0 1181491..1182036 - 181 28868292 rfbC-1 PSPTO_1077 - dTDP-4-dehydrorhamnose 3,5-epimerase 1049 55.59 0 1182707..1183636 - 309 28868293 - PSPTO_1078 - lipopolysaccharide biosynthesis protein 1050 55.89 0 1183678..1184568 - 296 28868294 rfbA PSPTO_1079 - glucose-1-phosphate thymidylyltransferase 1051 57.28 0 1184565..1185470 - 301 28868295 rfbD PSPTO_1080 - dTDP-4-dehydrorhamnose reductase 1052 55.59 0 1185470..1186543 - 357 28868296 rfbB-1 PSPTO_1081 - dTDP-glucose 4,6-dehydratase 1053 53.88 -1 1187114..1187332 + 72 28868297 - PSPTO_1082 - hypothetical protein 1054 58.96 0 1188596..1188997 - 133 28868298 - PSPTO_1083 - S24 family peptidase 1055 59.93 0 1190000..1190890 - 296 28868299 - PSPTO_1084 - integrase/recombinase XerD, putative 1056 54.23 -1 1190965..1191342 - 125 28868300 - PSPTO_1085 - hypothetical protein 1057 58.64 0 1191539..1193269 + 576 28868301 hsdM PSPTO_1086 - type I restriction-modification system, M subunit 1058 51.06 -1 1193259..1194527 + 422 28868302 - PSPTO_1087 - type I restriction-modification system, S subunit 1059 58.50 0 1194524..1195576 + 350 28868303 - PSPTO_1088 - hypothetical protein 1060 57.48 0 1195573..1198695 + 1040 28868304 - PSPTO_1089 - type I restriction-modification enzyme, R subunit, putative 1061 37.93 -2 1198881..1199858 - 325 28868305 - PSPTO_1090 - hypothetical protein 1062 38.85 -2 1199858..1200274 - 138 28868306 - PSPTO_1091 - hypothetical protein 1063 46.03 -2 1201192..1201506 + 104 28868307 mobB-1 PSPTO_1092 - mobilization protein MobB 1064 52.77 -1 1201509..1203926 + 805 28868308 - PSPTO_1093 - relaxase/mobilization nuclease domain-containing protein 1065 52.65 -1 1203937..1204314 + 125 28868309 - PSPTO_1094 - hypothetical protein 1066 59.24 0 1205057..1206079 + 340 28868310 - PSPTO_1095 - ISPsy4, transposase 1067 57.78 0 1206076..1206885 + 269 28868311 - PSPTO_1096 - transposase/IS protein 1068 51.21 -1 1207129..1209657 + 842 28868312 - PSPTO_1097 - hypothetical protein 1069 56.31 0 1211249..1212802 - 517 28868313 - PSPTO_1098 - ISPsy5, transposase 1070 48.33 -2 1212820..1213179 - 119 28868314 - PSPTO_1099 - ISPsy5, Orf1 1071 52.86 -1 1214486..1215673 - 395 28868315 - PSPTO_1100 - phage integrase family site specific recombinase 1072 58.49 0 1215889..1216989 - 366 28868316 ychF PSPTO_1101 - translation-associated GTPase 1073 60.34 0 1217011..1217595 - 194 28868317 pth PSPTO_1102 - peptidyl-tRNA hydrolase 1074 56.86 0 1217760..1218371 - 203 28868318 - PSPTO_1103 - 50S ribosomal protein L25/general stress protein Ctc 1075 54.99 0 1218509..1219450 - 313 28868319 prsA PSPTO_1104 - ribose-phosphate pyrophosphokinase 1076 54.42 -1 1219609..1220457 - 282 28868320 ispE PSPTO_1105 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1077 62.46 0 1220460..1221077 - 205 28868321 lolB PSPTO_1106 - outer membrane lipoprotein LolB 1078 60.71 0 1221082..1222809 - 575 28868322 - PSPTO_1107 - TPR domain-containing protein 1079 61.35 0 1223036..1224313 + 425 28868323 hemA PSPTO_1108 - glutamyl-tRNA reductase 1080 59.46 0 1224310..1225392 + 360 28868324 prfA PSPTO_1109 - peptide chain release factor 1 1081 64.27 +1 1225393..1226226 + 277 28868325 hemK PSPTO_1110 - hemK protein 1082 61.67 0 1226211..1226990 + 259 28868326 moeB PSPTO_1111 - molybdopterin biosynthesis protein MoeB 1083 58.70 0 1226983..1227810 + 275 28868327 murI PSPTO_1112 - glutamate racemase 1084 53.85 -1 1227846..1228430 - 194 28868328 - PSPTO_1113 - hypothetical protein 1085 55.56 0 1228770..1228994 - 74 28868329 - PSPTO_1114 - hypothetical protein 1086 60.32 0 1229099..1229602 - 167 28868330 - PSPTO_1115 - hypothetical protein 1087 58.23 0 1229595..1230863 - 422 28868331 cfa PSPTO_1116 - cyclopropane-fatty-acyl-phospholipid synthase 1088 61.26 0 1230850..1231533 - 227 28868332 - PSPTO_1117 - hypothetical protein 1089 59.86 0 1231647..1232894 - 415 28868333 - PSPTO_1118 - amine oxidase, flavin-containing 1090 61.60 0 1232891..1233679 - 262 28868334 - PSPTO_1119 - short chain dehydrogenase/reductase family oxidoreductase 1091 58.39 0 1233676..1234098 - 140 28868335 - PSPTO_1120 - hypothetical protein 1092 60.18 0 1234091..1235539 - 482 28868336 phrB PSPTO_1121 - deoxyribodipyrimidine photolyase 1093 62.93 +1 1235549..1236457 - 302 28868337 - PSPTO_1122 - MerR family transcriptional regulator 1094 58.10 0 1236463..1237419 - 318 28868338 - PSPTO_1123 - hypothetical protein 1095 56.10 0 1237618..1237740 - 40 28868339 - PSPTO_1124 - hypothetical protein 1096 58.33 0 1237715..1237930 - 71 28868340 - PSPTO_1125 - hypothetical protein 1097 64.54 +1 1237927..1238913 - 328 28868341 - PSPTO_1126 - amine oxidase, flavin-containing 1098 60.13 0 1239201..1240103 + 300 28868342 - PSPTO_1127 - hypothetical protein 1099 58.46 0 1240127..1241149 + 340 28868343 hemH PSPTO_1128 - ferrochelatase 1100 60.11 0 1241259..1242479 - 406 28868344 uraA PSPTO_1129 - uracil transporter 1101 60.56 0 1242541..1243179 - 212 28868345 upp PSPTO_1130 - uracil phosphoribosyltransferase 1102 59.50 0 1243387..1243944 + 185 28868346 hpt PSPTO_1131 - hypoxanthine-guanine phosphoribosyltransferase 1103 58.38 0 1244010..1244504 + 164 28868347 - PSPTO_1132 - hypothetical protein 1104 58.74 0 1245042..1245773 - 243 28868348 - PSPTO_1133 - amino acid ABC transporter, permease protein 1105 58.39 0 1245872..1246693 - 273 28868349 - PSPTO_1134 - amino acid ABC transporter, periplasmic amino acid-binding protein 1106 63.43 +1 1246804..1247700 + 298 28868350 - PSPTO_1135 - homocysteine S-methyltransferase family protein 1107 59.11 0 1247783..1249291 - 502 28868351 mqo PSPTO_1136 - malate:quinone oxidoreductase 1108 61.26 0 1249976..1250086 + 36 28868352 - PSPTO_1137 - hypothetical protein 1109 61.00 0 1250473..1251054 + 193 28868353 - PSPTO_1138 - putative lipoprotein 1110 54.76 0 1251135..1251386 - 83 28868354 - PSPTO_1139 - hypothetical protein 1111 59.88 0 1251599..1252762 - 387 28868355 - PSPTO_1140 - hypothetical protein 1112 56.83 0 1252869..1253051 + 60 28868356 - PSPTO_1141 - hypothetical protein 1113 60.15 0 1253051..1253311 + 86 28868357 - PSPTO_1142 - hypothetical protein 58.61 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0