version 1.0
Pseudomonas syringae pv. tomato str. DC3000, complete genome - 1..6397126 5475 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 962 56.24 0 1070947..1071579 + 210 28868206 - PSPTO_0986 - putative sulfite oxidase subunit YedZ 963 50.22 -2 1077352..1077582 + 76 28868207 - PSPTO_0987 - hypothetical protein 964 59.50 0 1077641..1080460 - 939 28868208 - PSPTO_0988 - hypothetical protein 965 61.02 0 1080457..1081164 - 235 28868209 - PSPTO_0989 - hypothetical protein 966 62.36 0 1081154..1082431 - 425 28868210 - PSPTO_0990 - hypothetical protein 967 65.30 +1 1082577..1083380 + 267 28868211 - PSPTO_0991 - hypothetical protein 968 56.14 0 1083373..1083828 + 151 28868212 rimI PSPTO_0992 - ribosomal-protein-alanine acetyltransferase 969 59.07 0 1083838..1084245 - 135 28868213 - PSPTO_0993 - hypothetical protein 970 59.31 0 1084494..1085132 + 212 28868214 - PSPTO_0994 - carbonic anhydrase 971 59.02 0 1085145..1086818 - 557 28868215 - PSPTO_0995 - methyl-accepting chemotaxis protein 972 60.61 0 1086926..1087585 - 219 28868216 - PSPTO_0996 - HD domain-containing protein 973 59.28 0 1087661..1089664 - 667 28868217 - PSPTO_0997 - acyltransferase family protein 974 54.93 0 1089883..1090257 + 124 28868218 - PSPTO_0998 - alkylphosphonate utilization operon protein PhnA, putative 975 61.36 0 1090603..1091826 + 407 28868219 - PSPTO_0999 - sugar efflux transporter 976 57.92 0 1091889..1092608 - 239 28868220 - PSPTO_1000 - CDP-alcohol phosphatidyltransferase family protein 977 59.23 0 1092695..1094710 - 671 28868221 - PSPTO_1001 - hypothetical protein 978 57.99 0 1096637..1097074 - 145 28868222 - PSPTO_1003 - acetyltransferase 979 56.76 0 1097150..1098391 - 413 28868223 - PSPTO_1004 - GGDEF domain-containing protein 980 53.87 -1 1098690..1099736 + 348 28868224 gmd PSPTO_1005 - GDP-mannose 4,6-dehydratase 981 56.86 0 1099737..1099838 + 33 28868225 - PSPTO_1006 - hypothetical protein 982 58.75 0 1099814..1100773 - 319 28868226 - PSPTO_1007 - GDP-6-deoxy-D-lyxo-4-hexulose reductase 983 59.67 0 1100918..1102318 + 466 28868227 - PSPTO_1008 - methyl-accepting chemotaxis protein 984 58.05 0 1102902..1103528 - 208 28868228 - PSPTO_1009 - isochorismatase family protein 985 62.28 0 1103683..1105254 - 523 28868229 phoD PSPTO_1010 - alkaline phosphatase D 986 60.11 0 1105251..1105814 - 187 28868230 - PSPTO_1011 - acetyltransferase 987 54.66 0 1106014..1106421 + 135 28868231 - PSPTO_1012 - TonB system transport protein 988 64.12 +1 1106421..1107206 + 261 28868232 - PSPTO_1013 - TonB domain-containing protein 989 57.56 0 1107227..1109509 + 760 28868233 - PSPTO_1014 - TonB-dependent receptor, putative 990 58.36 0 1109641..1110651 + 336 28868234 - PSPTO_1015 - integrase/recombinase XerC, putative 991 53.08 -1 1110675..1112279 + 534 28868235 - PSPTO_1016 - hypothetical protein 992 48.33 -2 1112173..1112532 + 119 28868236 - PSPTO_1017 - ISPsy5, Orf1 993 48.33 -2 1112778..1113137 + 119 28868237 - PSPTO_1019 - ISPsy5, Orf1 994 56.31 0 1113155..1114708 + 517 28868238 - PSPTO_1020 - ISPsy5, transposase 995 39.71 -2 1115514..1116344 - 276 28868239 hopAM1-1 PSPTO_1022 - type III effector HopAM1-1 996 62.66 0 1116554..1117102 + 182 28868240 - PSPTO_1023 - MotA/TolQ/ExbB proton channel family protein 997 60.28 0 1117166..1118434 + 422 28868241 - PSPTO_1024 - phospholipase D family protein 998 62.83 +1 1118505..1119704 + 399 28868242 - PSPTO_1025 - transglycosylase, putative 999 60.99 0 1119987..1121132 + 381 28868243 wssA PSPTO_1026 - cell morphology protein 1000 60.32 0 1121129..1123348 + 739 28868244 wssB PSPTO_1027 - cellulose synthase, catalytic subunit 1001 61.70 0 1123363..1125618 + 751 28868245 - PSPTO_1028 - cellulose synthase regulator protein 1002 65.02 +1 1125622..1126833 + 403 28868246 wssD PSPTO_1029 - endo-1,4-D-glucanase 1003 63.93 +1 1127013..1130705 + 1230 28868247 wssE PSPTO_1030 - cellulose synthase operon protein C 1004 60.51 0 1130721..1131386 + 221 28868248 wssF PSPTO_1031 - cell morphology protein 1005 62.52 0 1131383..1132057 + 224 28868249 wssG PSPTO_1032 - cell morphology protein 1006 62.01 0 1132076..1133491 + 471 28868250 wssH PSPTO_1033 - cellulose acetylase, subunit WssH 1007 63.80 +1 1133503..1134654 + 383 28868251 wssI PSPTO_1034 - cell morphology protein 1008 53.55 -1 1135027..1136406 - 459 28868252 - PSPTO_1035 - colicin/pyosin nuclease family protein 1009 47.62 -2 1136613..1137074 - 153 28868253 - PSPTO_1036 - hypothetical protein 1010 61.26 0 1137307..1137768 - 153 28868254 - PSPTO_1037 - hypothetical protein 1011 63.33 +1 1137765..1138214 - 149 28868255 - PSPTO_1038 - hypothetical protein 1012 60.30 0 1138505..1139509 + 334 28868256 - PSPTO_1039 - response regulator 1013 55.28 0 1139513..1139995 + 160 28868257 - PSPTO_1040 - sensory box protein 1014 63.64 +1 1140091..1141347 + 418 28868258 aroA PSPTO_1041 - 3-phosphoshikimate 1-carboxyvinyltransferase 1015 61.24 0 1141370..1142032 - 220 28868259 - PSPTO_1042 - transcriptional activator ChrR 1016 56.65 0 1142032..1142640 - 202 28868260 - PSPTO_1043 - RNA polymerase sigma factor RpoE 1017 55.56 0 1143054..1143233 - 59 28868261 - PSPTO_1044 - hypothetical protein 1018 54.07 -1 1143628..1144032 - 134 28868262 - PSPTO_1045 - virulence-associated protein, putative 1019 51.95 -1 1144032..1144262 - 76 28868263 - PSPTO_1046 - virulence-associated protein, putative 1020 63.38 +1 1144377..1145258 - 293 28868264 - PSPTO_1047 - hypothetical protein 1021 63.79 +1 1145233..1146204 - 323 28868265 - PSPTO_1048 - hypothetical protein 1022 60.42 0 1146288..1147568 - 426 28868266 dctM PSPTO_1049 - TRAP dicarboxylate transporter, DctM subunit 1023 59.47 0 1147569..1148096 - 175 28868267 - PSPTO_1050 - TRAP dicarboxylate transporter, DctQ subunit, putative 1024 58.87 0 1148160..1149185 - 341 28868268 dctP PSPTO_1051 - TRAP dicarboxylate transporter, DctP subunit 1025 60.90 0 1149242..1150126 - 294 28868269 - PSPTO_1052 - senescence marker protein-30 family protein 1026 59.90 0 1150183..1151010 - 275 28868270 - PSPTO_1053 - hypothetical protein 1027 58.87 0 1151189..1152457 - 422 28868271 - PSPTO_1054 - OprD family outer membrane porin 1028 52.97 -1 1152451..1152669 + 72 28868272 - PSPTO_1055 - hypothetical protein 1029 57.91 0 1152922..1153686 + 254 28868273 - PSPTO_1056 - short chain dehydrogenase/reductase family oxidoreductase 1030 55.96 0 1153738..1154148 - 136 28868274 - PSPTO_1057 - hypothetical protein 1031 52.92 -1 1154148..1154387 - 79 28868275 - PSPTO_1058 - hypothetical protein 1032 59.58 0 1154539..1156428 - 629 28868276 - PSPTO_1059 - methyl-accepting chemotaxis protein 1033 51.39 -1 1156430..1156573 + 47 28868277 - PSPTO_1060 - hypothetical protein 1034 57.42 0 1156819..1158699 + 626 28868278 - PSPTO_1061 - methyl-accepting chemotaxis protein 1035 53.41 -1 1158828..1159091 - 87 28868279 - PSPTO_1062 - hypothetical protein 1036 55.35 0 1162781..1163902 - 373 28868280 - PSPTO_1065 - DnaJ domain-containing protein 1037 61.08 0 1164246..1166303 + 685 28868281 - PSPTO_1066 - methyl-accepting chemotaxis protein 1038 54.44 -1 1166480..1167493 + 337 28868282 - PSPTO_1067 - glycosyl transferase, group 2 family protein 1039 51.99 -1 1167577..1169136 - 519 28868283 - PSPTO_1068 - hypothetical protein 1040 46.62 -2 1169280..1169678 - 132 28868284 - PSPTO_1069 - hypothetical protein 1041 53.84 -1 1169689..1170639 - 316 28868285 - PSPTO_1070 - lipopolysaccharide biosynthesis protein 1042 53.84 -1 1170626..1171576 - 316 28868286 - PSPTO_1071 - glycosyl transferase, group 2 family protein 1043 56.00 0 1171573..1172688 - 371 28868287 - PSPTO_1072 - aminotransferase 1044 53.01 -1 1172691..1174586 - 631 28868288 - PSPTO_1073 - hypothetical protein 1045 52.45 -1 1174632..1179317 - 1561 28868289 - PSPTO_1074 - glycosyl transferase, group 2 family protein 1046 55.02 0 1179310..1180674 - 454 28868290 - PSPTO_1075 - O-antigen ABC transporter, ATP-binding protein, putative 1047 57.13 0 1180664..1181491 - 275 28868291 - PSPTO_1076 - O-antigen ABC transporter, permease protein, putative 1048 55.31 0 1181491..1182036 - 181 28868292 rfbC-1 PSPTO_1077 - dTDP-4-dehydrorhamnose 3,5-epimerase 1049 55.59 0 1182707..1183636 - 309 28868293 - PSPTO_1078 - lipopolysaccharide biosynthesis protein 1050 55.89 0 1183678..1184568 - 296 28868294 rfbA PSPTO_1079 - glucose-1-phosphate thymidylyltransferase 1051 57.28 0 1184565..1185470 - 301 28868295 rfbD PSPTO_1080 - dTDP-4-dehydrorhamnose reductase 1052 55.59 0 1185470..1186543 - 357 28868296 rfbB-1 PSPTO_1081 - dTDP-glucose 4,6-dehydratase 1053 53.88 -1 1187114..1187332 + 72 28868297 - PSPTO_1082 - hypothetical protein 1054 58.96 0 1188596..1188997 - 133 28868298 - PSPTO_1083 - S24 family peptidase 1055 59.93 0 1190000..1190890 - 296 28868299 - PSPTO_1084 - integrase/recombinase XerD, putative 1056 54.23 -1 1190965..1191342 - 125 28868300 - PSPTO_1085 - hypothetical protein 1057 58.64 0 1191539..1193269 + 576 28868301 hsdM PSPTO_1086 - type I restriction-modification system, M subunit 1058 51.06 -1 1193259..1194527 + 422 28868302 - PSPTO_1087 - type I restriction-modification system, S subunit 1059 58.50 0 1194524..1195576 + 350 28868303 - PSPTO_1088 - hypothetical protein 1060 57.48 0 1195573..1198695 + 1040 28868304 - PSPTO_1089 - type I restriction-modification enzyme, R subunit, putative 1061 37.93 -2 1198881..1199858 - 325 28868305 - PSPTO_1090 - hypothetical protein 58.61 MEAN 4.14 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0