IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
937	 43.82	0	1131001..1131267	-	88	148652754	rpsT	PsycPRwf_0947	-	30S ribosomal protein S20
938	 44.04	0	1131756..1132586	-	276	148652755	-	PsycPRwf_0948	-	RDD domain-containing protein
939	 46.44	0	1132839..1135226	-	795	148652756	-	PsycPRwf_0949	-	phosphoenolpyruvate synthase
940	 46.11	0	1135772..1136671	+	299	148652757	-	PsycPRwf_0950	-	hypothetical protein
941	 44.79	0	1136850..1138490	+	546	148652758	-	PsycPRwf_0951	-	soluble pyridine nucleotide transhydrogenase
942	 44.44	0	1138667..1139098	+	143	148652759	-	PsycPRwf_0952	-	histidine triad (HIT) protein
943	 48.21	0	1139270..1140304	+	344	148652760	-	PsycPRwf_0953	-	nifR3 family TIM-barrel protein
944	 48.42	0	1140394..1142130	+	578	148652761	-	PsycPRwf_0954	-	ABC transporter related
945	 46.70	0	1142206..1142811	-	201	148652762	-	PsycPRwf_0955	-	GTP cyclohydrolase I
946	 48.53	0	1143036..1143884	+	282	148652763	-	PsycPRwf_0956	-	enoyl-(acyl-carrier-protein)-like protein
947	 42.53	-1	1143978..1144151	-	57	148652764	-	PsycPRwf_0957	-	hypothetical protein
948	 48.55	0	1144383..1145558	-	391	148652765	-	PsycPRwf_0958	-	cupin 4 family protein
949	 43.72	0	1145743..1145925	+	60	148652766	-	PsycPRwf_0959	-	hypothetical protein
950	 46.31	0	1146044..1147453	-	469	148652767	-	PsycPRwf_0960	-	adenylosuccinate lyase
951	 49.71	+1	1147962..1149158	-	398	148652768	-	PsycPRwf_0961	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
952	 44.80	0	1149173..1149730	+	185	148652769	-	PsycPRwf_0962	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
953	 41.07	-1	1149967..1150302	+	111	148652770	-	PsycPRwf_0963	-	glutaredoxin-like protein
954	 48.15	0	1150678..1151163	+	161	148652771	-	PsycPRwf_0964	-	hypothetical protein
955	 47.85	0	1151258..1153144	-	628	148652772	-	PsycPRwf_0965	-	sensory histidine kinase CreC
956	 48.73	0	1153141..1154004	-	287	148652773	-	PsycPRwf_0966	-	two component transcriptional regulator
957	 49.40	+1	1154243..1154908	+	221	148652774	-	PsycPRwf_0967	-	carboxylesterase
958	 47.58	0	1154933..1156027	+	364	148652775	-	PsycPRwf_0968	-	alpha/beta hydrolase fold
959	 47.33	0	1156088..1157209	+	373	148652776	-	PsycPRwf_0969	-	lipase chaperone
960	 42.99	0	1157275..1157709	-	144	148652777	-	PsycPRwf_0970	-	hypothetical protein
961	 43.31	0	1157834..1158364	-	176	148652778	-	PsycPRwf_0971	-	inorganic diphosphatase
962	 37.59	-2	1158719..1158859	-	46	148652779	-	PsycPRwf_0972	-	entericidin EcnAB
963	 48.25	0	1159231..1159773	+	180	148652780	-	PsycPRwf_0973	-	tRNA/rRNA methyltransferase (SpoU)
964	 49.61	+1	1159784..1160170	-	128	148652781	-	PsycPRwf_0974	-	DsrC family protein
965	 45.40	0	1160266..1160613	-	115	148652782	-	PsycPRwf_0975	-	hypothetical protein
966	 44.75	0	1160658..1160981	-	107	148652783	-	PsycPRwf_0976	-	hypothetical protein
967	 51.09	+1	1161006..1161416	-	136	148652784	-	PsycPRwf_0977	-	DsrE family protein
968	 48.64	0	1161658..1162983	+	441	148652785	-	PsycPRwf_0978	-	glycosyl transferase, group 1
969	 45.30	0	1163226..1163810	+	194	148652786	-	PsycPRwf_0979	-	phosphoesterase, PA-phosphatase related
970	 48.64	0	1163963..1166824	+	953	148652787	-	PsycPRwf_0980	-	(glutamate--ammonia-ligase) adenylyltransferase
971	 47.10	0	1166995..1167924	+	309	148652788	-	PsycPRwf_0981	-	branched-chain amino acid aminotransferase
972	 44.51	0	1168031..1169104	-	357	148652789	-	PsycPRwf_0982	-	NAD-dependent epimerase/dehydratase
973	 38.41	-2	1169188..1169817	-	209	148652790	-	PsycPRwf_0983	-	hypothetical protein
974	 38.01	-2	1169887..1170912	-	341	148652791	-	PsycPRwf_0984	-	capsular polysaccharide synthesis
975	 37.97	-2	1170842..1171747	-	301	148652792	-	PsycPRwf_0985	-	hypothetical protein
976	 41.28	-1	1171794..1172561	-	255	148652793	-	PsycPRwf_0986	-	glycosyl transferase family protein
977	 43.01	0	1172579..1173343	-	254	148652794	-	PsycPRwf_0987	-	glycosyl transferase family protein
978	 41.64	-1	1173374..1174372	-	332	148652795	-	PsycPRwf_0988	-	hypothetical protein
979	 42.46	-1	1174451..1175239	-	262	148652796	-	PsycPRwf_0989	-	hypothetical protein
980	 45.04	0	1175285..1176292	-	335	148652797	-	PsycPRwf_0990	-	lipid A biosynthesis acyltransferase
981	 47.34	0	1176400..1178205	-	601	148652798	aspS	PsycPRwf_0991	-	aspartyl-tRNA synthetase
982	 45.45	0	1178448..1179446	+	332	148652799	-	PsycPRwf_0992	-	putative periplasmic protease
983	 47.01	0	1179617..1180654	+	345	148652800	-	PsycPRwf_0993	-	alpha/beta hydrolase fold
984	 43.73	0	1180690..1181343	+	217	148652801	-	PsycPRwf_0994	-	hypothetical protein
985	 49.32	+1	1181647..1185963	+	1438	148652802	-	PsycPRwf_0995	-	ATP-dependent helicase HrpA
986	 40.24	-1	1185964..1186209	+	81	148652803	-	PsycPRwf_0996	-	hypothetical protein
987	 48.82	0	1186388..1187020	-	210	148652804	-	PsycPRwf_0997	-	FAD-binding 9, siderophore-interacting domain-containing protein
988	 43.64	0	1187244..1188155	-	303	148652805	-	PsycPRwf_0998	-	alpha/beta hydrolase fold
989	 43.17	0	1188443..1189438	-	331	148652806	-	PsycPRwf_0999	-	alcohol dehydrogenase
990	 41.14	-1	1189695..1190552	+	285	148652807	-	PsycPRwf_1000	-	alpha/beta hydrolase fold
991	 48.49	0	1191225..1192418	+	397	148652808	-	PsycPRwf_1001	-	signal recognition particle-docking protein FtsY
992	 44.86	0	1192518..1193081	+	187	148652809	-	PsycPRwf_1002	-	methylated-DNA--protein-cysteine methyltransferase
993	 46.55	0	1193074..1194072	-	332	148652810	-	PsycPRwf_1003	-	AraC family transcriptional regulator
994	 47.95	0	1194230..1196035	+	601	148652811	-	PsycPRwf_1004	-	acyl-CoA dehydrogenase domain-containing protein
995	 49.17	0	1196080..1196862	+	260	148652812	-	PsycPRwf_1005	-	short-chain dehydrogenase/reductase SDR
996	 46.98	0	1196916..1197677	+	253	148652813	-	PsycPRwf_1006	-	short chain dehydrogenase
997	 43.77	0	1197885..1198679	+	264	148652814	-	PsycPRwf_1007	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
998	 50.86	+1	1198676..1199668	+	330	148652815	-	PsycPRwf_1008	-	molybdopterin dehydrogenase, FAD-binding
999	 49.71	+1	1199671..1202112	+	813	148652816	-	PsycPRwf_1009	-	aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
1000	 49.81	+1	1202130..1203452	+	440	148652817	-	PsycPRwf_1010	-	hypothetical protein
1001	 46.38	0	1203500..1204327	+	275	148652818	-	PsycPRwf_1011	-	MobA-like protein-like protein
1002	 48.54	0	1204643..1205806	+	387	148652819	-	PsycPRwf_1012	-	cytochrome P450
1003	 49.40	+1	1205946..1206692	-	248	148652820	-	PsycPRwf_1013	-	hypothetical protein
1004	 45.97	0	1207141..1207971	+	276	148652821	-	PsycPRwf_1014	-	Ion transport protein
1005	 49.50	+1	1208098..1209396	+	432	148652822	-	PsycPRwf_1015	-	hypothetical protein
1006	 50.52	+1	1209526..1210200	+	224	148652823	-	PsycPRwf_1016	-	hypothetical protein
1007	 45.51	0	1210287..1210943	-	218	148652824	-	PsycPRwf_1017	-	lysine exporter protein LysE/YggA
1008	 46.42	0	1211057..1211545	-	162	148652825	-	PsycPRwf_1018	-	AsnC family transcriptional regulator
1009	 47.53	0	1211941..1213701	+	586	148652826	-	PsycPRwf_1019	-	2-isopropylmalate synthase
1010	 44.19	0	1213826..1214083	-	85	148652827	-	PsycPRwf_1020	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
1011	 47.51	0	1214122..1214925	-	267	148652828	-	PsycPRwf_1021	-	hypothetical protein
1012	 46.54	0	1215178..1216593	-	471	148652829	-	PsycPRwf_1022	-	peptidase U32
1013	 39.45	-1	1217270..1218070	+	266	148652830	-	PsycPRwf_1023	-	Outer membrane protein and related peptidoglycan-associated (lipo)protein-like protein
1014	 43.86	0	1218113..1218967	-	284	148652831	-	PsycPRwf_1024	-	integrase catalytic subunit
1015	 41.41	-1	1218982..1219278	-	98	148652832	-	PsycPRwf_1025	-	transposase IS3/IS911 family protein
1016	 47.04	0	1219464..1230014	+	3516	148652833	-	PsycPRwf_1026	-	hypothetical protein
1017	 41.41	-1	1230077..1230373	+	98	148652834	-	PsycPRwf_1027	-	transposase IS3/IS911 family protein
1018	 43.86	0	1230388..1231242	+	284	148652835	-	PsycPRwf_1028	-	integrase catalytic subunit
1019	 41.63	-1	1231256..1235845	+	1529	148652836	-	PsycPRwf_1029	-	hemolysin-type calcium-binding region
1020	 45.55	0	1236035..1237270	-	411	148652837	-	PsycPRwf_1030	-	hypothetical protein
1021	 46.30	0	1237461..1238486	+	341	148652838	-	PsycPRwf_1031	-	LysR family transcriptional regulator
1022	 47.36	0	1238585..1239739	-	384	148652839	-	PsycPRwf_1032	-	S-(hydroxymethyl)glutathione dehydrogenase
1023	 46.38	0	1239858..1240754	+	298	148652840	-	PsycPRwf_1033	-	LysR family transcriptional regulator
1024	 46.37	0	1240760..1241626	-	288	148652841	-	PsycPRwf_1034	-	MscS mechanosensitive ion channel
1025	 51.37	+1	1241818..1243275	-	485	148652842	-	PsycPRwf_1035	-	aminoacyl-histidine dipeptidase
1026	 41.03	-1	1243625..1243858	-	77	148652843	-	PsycPRwf_1036	-	hypothetical protein
1027	 46.18	0	1244069..1244644	-	191	148652844	-	PsycPRwf_1037	-	glyoxalase/bleomycin resistance protein/dioxygenase
1028	 48.45	0	1244680..1245969	-	429	148652845	-	PsycPRwf_1038	-	fumarylacetoacetase
1029	 47.93	0	1246146..1247111	-	321	148652846	-	PsycPRwf_1039	-	LysR family transcriptional regulator
1030	 48.53	0	1247267..1248385	+	372	148652847	-	PsycPRwf_1040	-	4-hydroxyphenylpyruvate dioxygenase
1031	 47.87	0	1248472..1249269	+	265	148652848	phhA	PsycPRwf_1041	-	phenylalanine 4-monooxygenase
1032	 47.37	0	1249332..1249673	+	113	148652849	-	PsycPRwf_1042	-	transcriptional coactivator/pterin dehydratase
1033	 46.21	0	1249751..1251163	+	470	148652850	-	PsycPRwf_1043	-	Na+/H+ antiporter NhaC
1034	 46.71	0	1251271..1252107	-	278	148652851	-	PsycPRwf_1044	-	phosphoesterase, PA-phosphatase related
1035	 46.71	0	1252136..1252606	-	156	148652852	-	PsycPRwf_1045	-	diacylglycerol kinase
1036	 44.34	0	1252822..1254156	-	444	148652853	-	PsycPRwf_1046	-	integral membrane sensor signal transduction histidine kinase
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.