IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
879	 49.01	0	1056928..1058337	-	469	148652696	-	PsycPRwf_0889	-	RND family efflux transporter MFP subunit
880	 47.85	0	1058929..1059858	-	309	148652697	-	PsycPRwf_0890	-	polyprenyl synthetase
881	 40.38	-1	1060615..1060926	+	103	148652698	rplU	PsycPRwf_0891	-	50S ribosomal protein L21
882	 44.96	0	1061069..1061326	+	85	148652699	rpmA	PsycPRwf_0892	-	50S ribosomal protein L27
883	 43.10	0	1061779..1062495	+	238	148652700	-	PsycPRwf_0893	-	outer membrane lipoprotein carrier protein LolA
884	 42.28	-1	1062950..1063597	+	215	148652701	-	PsycPRwf_0894	-	TetR family transcriptional regulator
885	 44.79	0	1063642..1064793	-	383	148652702	-	PsycPRwf_0895	-	hypothetical protein
886	 49.32	+1	1064857..1065594	-	245	148652703	-	PsycPRwf_0896	-	radical SAM domain-containing protein
887	 45.99	0	1065832..1066653	-	273	148652704	dapD	PsycPRwf_0897	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
888	 42.61	0	1066779..1067705	-	308	148652705	-	PsycPRwf_0898	-	lysophospholipase-like protein
889	 45.98	0	1068066..1069109	-	347	148652706	-	PsycPRwf_0899	-	lipoyl synthase
890	 48.76	0	1069270..1069671	-	133	148652707	-	PsycPRwf_0900	-	carboxymuconolactone decarboxylase
891	 47.39	0	1070212..1072815	+	867	148652708	-	PsycPRwf_0901	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
892	 44.67	0	1073165..1074364	+	399	148652709	-	PsycPRwf_0902	-	GntR family transcriptional regulator
893	 46.37	0	1074487..1075299	-	270	148652710	-	PsycPRwf_0903	-	enoyl-CoA hydratase/isomerase
894	 45.49	0	1075488..1076540	-	350	148652711	-	PsycPRwf_0904	-	threonine aldolase
895	 46.46	0	1076673..1078112	-	479	148652712	-	PsycPRwf_0905	-	replicative DNA helicase
896	 48.89	0	1078576..1079700	+	374	148652713	-	PsycPRwf_0906	-	4-hydroxythreonine-4-phosphate dehydrogenase
897	 46.80	0	1079786..1080676	+	296	148652714	ksgA	PsycPRwf_0907	-	dimethyladenosine transferase
898	 47.79	0	1080796..1081632	+	278	148652715	apaH	PsycPRwf_0908	-	diadenosine tetraphosphatase
899	 48.16	0	1081781..1082515	-	244	148652716	-	PsycPRwf_0909	-	short-chain dehydrogenase/reductase SDR
900	 45.79	0	1082728..1085160	-	810	148652717	-	PsycPRwf_0910	-	site-specific recombinase-like protein
901	 46.27	0	1085399..1087183	-	594	148652718	-	PsycPRwf_0911	-	acyl-CoA dehydrogenase domain-containing protein
902	 46.93	0	1087452..1089245	-	597	148652719	-	PsycPRwf_0912	-	acyl-CoA dehydrogenase domain-containing protein
903	 50.17	+1	1089892..1090794	-	300	148652720	-	PsycPRwf_0913	-	hypothetical protein
904	 46.41	0	1090799..1091662	-	287	148652721	-	PsycPRwf_0914	-	5,10-methylenetetrahydrofolate reductase
905	 46.55	0	1091801..1093222	-	473	148652722	-	PsycPRwf_0915	-	S-adenosyl-L-homocysteine hydrolase
906	 42.46	-1	1093904..1094758	+	284	148652723	-	PsycPRwf_0916	-	hypothetical protein
907	 44.83	0	1094848..1095708	-	286	148652724	-	PsycPRwf_0917	-	4'-phosphopantetheinyl transferase
908	 51.46	+1	1095924..1096436	-	170	148652725	-	PsycPRwf_0918	-	peptidoglycan-associated lipoprotein
909	 42.63	0	1096834..1097457	-	207	148652726	-	PsycPRwf_0919	-	hypothetical protein
910	 48.23	0	1097672..1100263	+	863	148652727	-	PsycPRwf_0920	-	aminopeptidase N
911	 46.13	0	1100361..1101446	-	361	148652728	-	PsycPRwf_0921	-	phospho-2-dehydro-3-deoxyheptonate aldolase
912	 48.01	0	1101854..1103161	+	435	148652729	-	PsycPRwf_0922	-	lipid-A-disaccharide synthase
913	 48.51	0	1103202..1104110	+	302	148652730	-	PsycPRwf_0923	-	ribonuclease H
914	 42.65	0	1104174..1106705	-	843	148652731	-	PsycPRwf_0924	-	hypothetical protein
915	 45.93	0	1106973..1107893	-	306	148652732	-	PsycPRwf_0925	-	hypothetical protein
916	 50.62	+1	1108046..1108687	-	213	148652733	-	PsycPRwf_0926	-	ubiquinone biosynthesis protein COQ7-like protein
917	 46.81	0	1108753..1110051	-	432	148652734	-	PsycPRwf_0927	-	ErfK/YbiS/YcfS/YnhG family protein
918	 46.75	0	1110478..1111662	+	394	148652735	-	PsycPRwf_0928	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
919	 51.54	+1	1111785..1112888	+	367	148652736	-	PsycPRwf_0929	-	chorismate synthase
920	 48.73	0	1113095..1113802	+	235	148652737	-	PsycPRwf_0930	-	nitroreductase
921	 47.44	0	1113875..1115263	+	462	148652738	gpsA	PsycPRwf_0931	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
922	 50.44	+1	1115273..1115728	+	151	148652739	-	PsycPRwf_0932	-	putative phosphohistidine phosphatase, SixA
923	 43.58	0	1115791..1116327	+	178	148652740	-	PsycPRwf_0933	-	membrane protein-like protein
924	 45.02	0	1116567..1117601	+	344	148652741	-	PsycPRwf_0934	-	dihydroorotate dehydrogenase 2
925	 50.00	+1	1117647..1118198	+	183	148652742	-	PsycPRwf_0935	-	colicin V production protein
926	 45.90	0	1118303..1119838	+	511	148652743	-	PsycPRwf_0936	-	amidophosphoribosyltransferase
927	 45.16	0	1120041..1120556	+	171	148652744	-	PsycPRwf_0937	-	endoribonuclease L-PSP
928	 47.67	0	1120664..1122142	-	492	148652745	-	PsycPRwf_0938	-	anion transporter
929	 46.68	0	1122156..1123586	-	476	148652746	-	PsycPRwf_0939	-	MATE efflux family protein
930	 46.53	0	1123805..1125001	-	398	148652747	secF	PsycPRwf_0940	-	preprotein translocase subunit SecF
931	 47.18	0	1125011..1126888	-	625	148652748	secD	PsycPRwf_0941	-	preprotein translocase subunit SecD
932	 45.65	0	1127160..1127492	-	110	148652749	-	PsycPRwf_0942	-	preprotein translocase, YajC subunit
933	 40.80	-1	1127888..1128262	+	124	148652750	-	PsycPRwf_0943	-	hypothetical protein
934	 48.66	0	1128491..1129234	+	247	148652751	-	PsycPRwf_0944	-	orotidine 5'-phosphate decarboxylase
935	 47.55	0	1129231..1130025	+	264	148652752	-	PsycPRwf_0945	-	metallophosphoesterase
936	 47.65	0	1130038..1130889	+	283	148652753	-	PsycPRwf_0946	-	phosphoglycerate mutase
937	 43.82	0	1131001..1131267	-	88	148652754	rpsT	PsycPRwf_0947	-	30S ribosomal protein S20
938	 44.04	0	1131756..1132586	-	276	148652755	-	PsycPRwf_0948	-	RDD domain-containing protein
939	 46.44	0	1132839..1135226	-	795	148652756	-	PsycPRwf_0949	-	phosphoenolpyruvate synthase
940	 46.11	0	1135772..1136671	+	299	148652757	-	PsycPRwf_0950	-	hypothetical protein
941	 44.79	0	1136850..1138490	+	546	148652758	-	PsycPRwf_0951	-	soluble pyridine nucleotide transhydrogenase
942	 44.44	0	1138667..1139098	+	143	148652759	-	PsycPRwf_0952	-	histidine triad (HIT) protein
943	 48.21	0	1139270..1140304	+	344	148652760	-	PsycPRwf_0953	-	nifR3 family TIM-barrel protein
944	 48.42	0	1140394..1142130	+	578	148652761	-	PsycPRwf_0954	-	ABC transporter related
945	 46.70	0	1142206..1142811	-	201	148652762	-	PsycPRwf_0955	-	GTP cyclohydrolase I
946	 48.53	0	1143036..1143884	+	282	148652763	-	PsycPRwf_0956	-	enoyl-(acyl-carrier-protein)-like protein
947	 42.53	-1	1143978..1144151	-	57	148652764	-	PsycPRwf_0957	-	hypothetical protein
948	 48.55	0	1144383..1145558	-	391	148652765	-	PsycPRwf_0958	-	cupin 4 family protein
949	 43.72	0	1145743..1145925	+	60	148652766	-	PsycPRwf_0959	-	hypothetical protein
950	 46.31	0	1146044..1147453	-	469	148652767	-	PsycPRwf_0960	-	adenylosuccinate lyase
951	 49.71	+1	1147962..1149158	-	398	148652768	-	PsycPRwf_0961	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
952	 44.80	0	1149173..1149730	+	185	148652769	-	PsycPRwf_0962	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
953	 41.07	-1	1149967..1150302	+	111	148652770	-	PsycPRwf_0963	-	glutaredoxin-like protein
954	 48.15	0	1150678..1151163	+	161	148652771	-	PsycPRwf_0964	-	hypothetical protein
955	 47.85	0	1151258..1153144	-	628	148652772	-	PsycPRwf_0965	-	sensory histidine kinase CreC
956	 48.73	0	1153141..1154004	-	287	148652773	-	PsycPRwf_0966	-	two component transcriptional regulator
957	 49.40	+1	1154243..1154908	+	221	148652774	-	PsycPRwf_0967	-	carboxylesterase
958	 47.58	0	1154933..1156027	+	364	148652775	-	PsycPRwf_0968	-	alpha/beta hydrolase fold
959	 47.33	0	1156088..1157209	+	373	148652776	-	PsycPRwf_0969	-	lipase chaperone
960	 42.99	0	1157275..1157709	-	144	148652777	-	PsycPRwf_0970	-	hypothetical protein
961	 43.31	0	1157834..1158364	-	176	148652778	-	PsycPRwf_0971	-	inorganic diphosphatase
962	 37.59	-2	1158719..1158859	-	46	148652779	-	PsycPRwf_0972	-	entericidin EcnAB
963	 48.25	0	1159231..1159773	+	180	148652780	-	PsycPRwf_0973	-	tRNA/rRNA methyltransferase (SpoU)
964	 49.61	+1	1159784..1160170	-	128	148652781	-	PsycPRwf_0974	-	DsrC family protein
965	 45.40	0	1160266..1160613	-	115	148652782	-	PsycPRwf_0975	-	hypothetical protein
966	 44.75	0	1160658..1160981	-	107	148652783	-	PsycPRwf_0976	-	hypothetical protein
967	 51.09	+1	1161006..1161416	-	136	148652784	-	PsycPRwf_0977	-	DsrE family protein
968	 48.64	0	1161658..1162983	+	441	148652785	-	PsycPRwf_0978	-	glycosyl transferase, group 1
969	 45.30	0	1163226..1163810	+	194	148652786	-	PsycPRwf_0979	-	phosphoesterase, PA-phosphatase related
970	 48.64	0	1163963..1166824	+	953	148652787	-	PsycPRwf_0980	-	(glutamate--ammonia-ligase) adenylyltransferase
971	 47.10	0	1166995..1167924	+	309	148652788	-	PsycPRwf_0981	-	branched-chain amino acid aminotransferase
972	 44.51	0	1168031..1169104	-	357	148652789	-	PsycPRwf_0982	-	NAD-dependent epimerase/dehydratase
973	 38.41	-2	1169188..1169817	-	209	148652790	-	PsycPRwf_0983	-	hypothetical protein
974	 38.01	-2	1169887..1170912	-	341	148652791	-	PsycPRwf_0984	-	capsular polysaccharide synthesis
975	 37.97	-2	1170842..1171747	-	301	148652792	-	PsycPRwf_0985	-	hypothetical protein
976	 41.28	-1	1171794..1172561	-	255	148652793	-	PsycPRwf_0986	-	glycosyl transferase family protein
977	 43.01	0	1172579..1173343	-	254	148652794	-	PsycPRwf_0987	-	glycosyl transferase family protein
978	 41.64	-1	1173374..1174372	-	332	148652795	-	PsycPRwf_0988	-	hypothetical protein
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.