IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
787	 43.39	0	946815..948047	-	410	148652604	-	PsycPRwf_0795	-	cytochrome b/b6 domain-containing protein
788	 48.53	0	948044..948655	-	203	148652605	-	PsycPRwf_0796	-	ubiquinol-cytochrome c reductase, iron-sulfur subunit
789	 42.89	0	948936..949322	-	128	148652606	rpsI	PsycPRwf_0797	-	30S ribosomal protein S9
790	 43.36	0	949344..949772	-	142	148652607	rplM	PsycPRwf_0798	-	50S ribosomal protein L13
791	 46.78	0	949959..950687	-	242	148652608	-	PsycPRwf_0799	-	putative methyltransferase
792	 48.16	0	950754..952790	-	678	148652609	-	PsycPRwf_0800	-	peptidoglycan glycosyltransferase
793	 45.50	0	953189..954520	+	443	148652610	-	PsycPRwf_0801	-	hypothetical protein
794	 48.51	0	955013..956962	+	649	148652611	-	PsycPRwf_0802	-	cytochrome c-type biogenesis protein CcmF
795	 45.73	0	957036..957656	+	206	148652612	-	PsycPRwf_0803	-	periplasmic protein thiol--disulphide oxidoreductase DsbE
796	 45.50	0	957653..958285	+	210	148652613	-	PsycPRwf_0804	-	cytochrome C biogenesis protein
797	 47.18	0	958371..959786	+	471	148652614	-	PsycPRwf_0805	-	cytochrome c biogenesis factor-like protein
798	 43.68	0	960203..960859	+	218	148652615	-	PsycPRwf_0806	-	nucleoside-triphosphate--adenylate kinase
799	 45.18	0	960943..961398	-	151	148652616	-	PsycPRwf_0807	-	preprotein translocase subunit SecB
800	 39.39	-1	961492..961755	-	87	148652617	-	PsycPRwf_0808	-	glutaredoxin 3
801	 46.85	0	961969..962397	-	142	148652618	-	PsycPRwf_0809	-	rhodanese domain-containing protein
802	 49.42	+1	962523..963647	-	374	148652619	-	PsycPRwf_0810	-	ribosome small subunit-dependent GTPase A
803	 43.64	0	964202..964783	+	193	148652620	-	PsycPRwf_0811	-	oligoribonuclease
804	 46.02	0	964807..965697	-	296	148652621	-	PsycPRwf_0812	-	UDP-2,3-diacylglucosamine hydrolase
805	 43.59	0	965716..966300	-	194	148652622	-	PsycPRwf_0813	-	peptidylprolyl isomerase
806	 46.27	0	966658..968451	+	597	148652623	-	PsycPRwf_0814	-	glutaminyl-tRNA synthetase
807	 47.98	0	968550..970181	-	543	148652624	-	PsycPRwf_0815	-	bifunctional HTH-domain containing protein/aminotransferase
808	 51.54	+1	970615..971037	+	140	148652625	-	PsycPRwf_0816	-	methionine-R-sulfoxide reductase
809	 42.93	0	971267..971860	+	197	148652626	-	PsycPRwf_0817	-	6-pyruvoyl-tetrahydropterin synthase-like protein
810	 51.65	+1	971923..972408	+	161	148652627	-	PsycPRwf_0818	-	hypothetical protein
811	 49.77	+1	972509..974461	+	650	148652628	-	PsycPRwf_0819	-	ATPase domain-containing protein
812	 47.36	0	974546..975643	+	365	148652629	-	PsycPRwf_0820	-	tRNA delta(2)-isopentenylpyrophosphate transferase
813	 49.34	+1	976013..976618	+	201	148652630	-	PsycPRwf_0821	-	RNA chaperone Hfq
814	 49.85	+1	976910..977908	+	332	148652631	-	PsycPRwf_0822	-	KpsF/GutQ family protein
815	 43.56	0	978038..978565	+	175	148652632	-	PsycPRwf_0823	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
816	 43.88	0	978614..979201	+	195	148652633	-	PsycPRwf_0824	-	hypothetical protein
817	 48.95	0	979423..979896	+	157	148652634	-	PsycPRwf_0825	-	cell envelope biogenesis YhbN
818	 50.61	+1	979900..980715	+	271	148652635	-	PsycPRwf_0826	-	ABC transporter related
819	 51.76	+1	981017..982465	+	482	148652636	-	PsycPRwf_0827	-	DNA repair protein RadA
820	 51.70	+1	982484..983278	-	264	148652637	-	PsycPRwf_0828	-	phosphomethylpyrimidine kinase
821	 49.53	+1	983327..983968	-	213	148652638	-	PsycPRwf_0829	-	thiamine-phosphate pyrophosphorylase
822	 52.06	+1	983961..984761	-	266	148652639	-	PsycPRwf_0830	-	hydroxyethylthiazole kinase
823	 44.39	0	985228..985824	-	198	148652640	-	PsycPRwf_0831	-	rare lipoprotein A
824	 48.22	0	986177..986653	-	158	148652641	-	PsycPRwf_0832	-	transcription elongation factor GreA
825	 48.48	0	987231..990491	-	1086	148652642	-	PsycPRwf_0833	-	carbamoyl-phosphate synthase, large subunit
826	 48.45	0	990571..991827	-	418	148652643	-	PsycPRwf_0834	-	carbamoyl phosphate synthase small subunit
827	 46.70	0	992098..992643	-	181	148652644	-	PsycPRwf_0835	-	phosphoesterase, PA-phosphatase related
828	 46.37	0	992960..993496	+	178	148652645	-	PsycPRwf_0836	-	carbonic anhydrase
829	 45.40	0	993619..994314	+	231	148652646	-	PsycPRwf_0837	-	HAD family hydrolase
830	 48.57	0	994586..995563	+	325	148652647	-	PsycPRwf_0838	-	peptide chain release factor 2
831	 45.98	0	995836..996270	+	144	148652648	-	PsycPRwf_0839	-	DoxX family protein
832	 43.55	0	996333..997154	-	273	148652649	-	PsycPRwf_0840	-	Cof-like hydrolase
833	 39.58	-1	997489..997776	+	95	148652650	-	PsycPRwf_0841	-	hypothetical protein
834	 41.84	-1	997922..998344	+	140	148652651	-	PsycPRwf_0842	-	hypothetical protein
835	 51.53	+1	998370..999479	+	369	148652652	-	PsycPRwf_0843	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
836	 50.57	+1	999485..1000279	+	264	148652653	-	PsycPRwf_0844	-	cobalamin 5'-phosphate synthase
837	 48.94	0	1000291..1000905	+	204	148652654	-	PsycPRwf_0845	-	phosphoglycerate mutase
838	 45.19	0	1000902..1001525	-	207	148652655	-	PsycPRwf_0846	-	HPP family protein+B94
839	 42.81	0	1001982..1002572	+	196	148652656	-	PsycPRwf_0847	-	multiple antibiotic resistance (MarC)-related protein
840	 46.83	0	1002650..1003990	-	446	148652657	-	PsycPRwf_0848	-	imidazolonepropionase
841	 48.19	0	1004031..1005107	-	358	148652658	-	PsycPRwf_0849	-	formiminoglutamase
842	 52.24	+1	1005163..1006722	-	519	148652659	-	PsycPRwf_0850	-	histidine ammonia-lyase
843	 43.25	0	1006886..1008277	-	463	148652660	-	PsycPRwf_0851	-	nucleoside recognition domain-containing protein
844	 50.23	+1	1008521..1010242	-	573	148652661	-	PsycPRwf_0852	-	urocanate hydratase
845	 48.29	0	1010433..1011281	+	282	148652662	-	PsycPRwf_0853	-	GntR family transcriptional regulator
846	 45.52	0	1011600..1012001	+	133	148652663	-	PsycPRwf_0854	-	regulatory protein, ArsR
847	 46.85	0	1012098..1012526	+	142	148652664	-	PsycPRwf_0855	-	protein of unknown function DUF395, YeeE/YedE
848	 47.11	0	1012574..1013023	+	149	148652665	-	PsycPRwf_0856	-	protein of unknown function DUF395, YeeE/YedE
849	 34.94	-2	1013178..1013675	-	165	148652666	-	PsycPRwf_0857	-	GCN5-related N-acetyltransferase
850	 47.57	0	1014796..1016010	+	404	148652667	-	PsycPRwf_0858	-	hypothetical protein
851	 43.53	0	1016423..1016677	+	84	148652668	-	PsycPRwf_0859	-	hypothetical protein
852	 46.78	0	1016888..1018753	+	621	148652669	-	PsycPRwf_0860	-	ABC transporter related
853	 45.26	0	1018954..1019238	+	94	148652670	-	PsycPRwf_0861	-	hypothetical protein
854	 47.63	0	1019488..1021152	+	554	148652671	-	PsycPRwf_0862	-	AMP-dependent synthetase and ligase
855	 49.29	0	1021247..1022023	+	258	148652672	-	PsycPRwf_0863	-	short-chain dehydrogenase/reductase SDR
856	 48.77	0	1022250..1023389	+	379	148652673	-	PsycPRwf_0864	-	topoisomerase IB-like protein
857	 45.99	0	1023457..1025226	+	589	148652674	cls	PsycPRwf_0865	-	cardiolipin synthetase
858	 50.98	+1	1025338..1026969	+	543	148652675	-	PsycPRwf_0866	-	3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein
859	 48.88	0	1026966..1027679	+	237	148652676	-	PsycPRwf_0867	-	hypothetical protein
860	 50.27	+1	1027804..1029096	+	430	148652677	-	PsycPRwf_0868	-	ABC-type Fe3+ transport system periplasmic component-like protein
861	 45.58	0	1029248..1030366	+	372	148652678	-	PsycPRwf_0869	-	extracellular solute-binding protein
862	 47.00	0	1030489..1032090	+	533	148652679	-	PsycPRwf_0870	-	binding-protein-dependent transport systems inner membrane component
863	 47.45	0	1032227..1033444	+	405	148652680	-	PsycPRwf_0871	-	ABC transporter related
864	 46.89	0	1033504..1034307	-	267	148652681	-	PsycPRwf_0872	-	methyltransferase type 11
865	 47.52	0	1034672..1037371	+	899	148652682	-	PsycPRwf_0873	-	DNA gyrase, A subunit
866	 44.11	0	1037473..1038177	+	234	148652683	-	PsycPRwf_0874	-	glutathione S-transferase domain-containing protein
867	 44.29	0	1038167..1038385	+	72	148652684	-	PsycPRwf_0875	-	hypothetical protein
868	 48.36	0	1038758..1041346	+	862	148652685	-	PsycPRwf_0876	-	ATPase
869	 44.87	0	1041769..1043397	+	542	148652686	-	PsycPRwf_0877	-	choline/carnitine/betaine transporter
870	 43.54	0	1043500..1043832	-	110	148652687	-	PsycPRwf_0878	-	hypothetical protein
871	 48.41	0	1043907..1045073	-	388	148652688	-	PsycPRwf_0879	-	S-adenosylmethionine synthetase
872	 48.13	0	1045337..1046032	-	231	148652689	-	PsycPRwf_0880	-	endonuclease III
873	 52.05	+1	1046062..1046889	-	275	148652690	-	PsycPRwf_0881	-	electron transport complex, RnfABCDGE type, B subunit
874	 44.88	0	1046931..1048688	-	585	148652691	-	PsycPRwf_0882	-	hypothetical protein
875	 46.64	0	1050702..1051340	+	212	148652692	-	PsycPRwf_0885	-	hypothetical protein
876	 45.68	0	1051440..1051763	+	107	148652693	-	PsycPRwf_0886	-	hypothetical protein
877	 46.51	0	1051911..1053671	-	586	148652694	-	PsycPRwf_0887	-	RND efflux system outer membrane lipoprotein
878	 46.67	0	1053668..1056898	-	1076	148652695	-	PsycPRwf_0888	-	hydrophobe/amphiphile efflux-1 (HAE1) family protein
879	 49.01	0	1056928..1058337	-	469	148652696	-	PsycPRwf_0889	-	RND family efflux transporter MFP subunit
880	 47.85	0	1058929..1059858	-	309	148652697	-	PsycPRwf_0890	-	polyprenyl synthetase
881	 40.38	-1	1060615..1060926	+	103	148652698	rplU	PsycPRwf_0891	-	50S ribosomal protein L21
882	 44.96	0	1061069..1061326	+	85	148652699	rpmA	PsycPRwf_0892	-	50S ribosomal protein L27
883	 43.10	0	1061779..1062495	+	238	148652700	-	PsycPRwf_0893	-	outer membrane lipoprotein carrier protein LolA
884	 42.28	-1	1062950..1063597	+	215	148652701	-	PsycPRwf_0894	-	TetR family transcriptional regulator
885	 44.79	0	1063642..1064793	-	383	148652702	-	PsycPRwf_0895	-	hypothetical protein
886	 49.32	+1	1064857..1065594	-	245	148652703	-	PsycPRwf_0896	-	radical SAM domain-containing protein
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.