IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
723	 41.41	-1	873285..873581	+	98	148652540	-	PsycPRwf_0730	-	transposase IS3/IS911 family protein
724	 43.86	0	873596..874450	+	284	148652541	-	PsycPRwf_0731	-	integrase catalytic subunit
725	 35.81	-2	874540..875265	+	241	148652542	-	PsycPRwf_0732	-	GntR family transcriptional regulator
726	 39.06	-2	875419..876081	-	220	148652543	-	PsycPRwf_0733	-	hypothetical protein
727	 45.43	0	876371..877015	-	214	148652544	-	PsycPRwf_0734	-	maleylacetoacetate isomerase
728	 45.32	0	877225..878058	+	277	148652545	-	PsycPRwf_0735	-	regulatory protein, IclR
729	 41.80	-1	878447..879355	-	302	148652546	-	PsycPRwf_0737	-	LysR family transcriptional regulator
730	 47.43	0	879585..880634	+	349	148652547	-	PsycPRwf_0738	-	cupin 2 domain-containing protein
731	 43.21	0	880815..881462	+	215	148652548	-	PsycPRwf_0739	-	maleylacetoacetate isomerase
732	 44.54	0	881501..882205	+	234	148652549	-	PsycPRwf_0740	-	fumarylacetoacetate (FAA) hydrolase
733	 40.85	-1	882443..883759	+	438	148652550	-	PsycPRwf_0741	-	major facilitator transporter
734	 46.99	0	883866..885344	+	492	148652551	-	PsycPRwf_0742	-	aldehyde dehydrogenase
735	 48.79	0	885386..887041	+	551	148652552	-	PsycPRwf_0743	-	thiamine pyrophosphate binding domain-containing protein
736	 48.17	0	887311..888348	+	345	148652553	-	PsycPRwf_0744	-	transport system permease protein
737	 46.41	0	888345..889568	+	407	148652554	-	PsycPRwf_0745	-	periplasmic binding protein
738	 46.46	0	889601..890377	+	258	148652555	-	PsycPRwf_0746	-	ABC transporter related
739	 45.32	0	890421..891254	-	277	148652556	-	PsycPRwf_0747	-	hypothetical protein
740	 42.68	0	891455..892021	-	188	148652557	-	PsycPRwf_0748	-	hypothetical protein
741	 45.70	0	892054..893379	-	441	148652558	-	PsycPRwf_0749	-	TrkH family potassium uptake protein
742	 44.04	0	893479..894132	-	217	148652559	-	PsycPRwf_0750	-	TrkA domain-containing protein
743	 47.72	0	894418..896148	-	576	148652560	-	PsycPRwf_0751	-	prolyl-tRNA synthetase
744	 49.39	+1	896651..897385	+	244	148652561	-	PsycPRwf_0752	-	hypothetical protein
745	 43.56	0	897405..899057	-	550	148652562	-	PsycPRwf_0753	-	deoxyribodipyrimidine photo-lyase
746	 48.48	0	899339..899998	+	219	148652563	-	PsycPRwf_0754	-	phosphoribosylanthranilate isomerase
747	 49.36	+1	900126..901373	+	415	148652564	-	PsycPRwf_0755	-	tryptophan synthase subunit beta
748	 49.40	+1	901445..902272	+	275	148652565	-	PsycPRwf_0756	-	tryptophan synthase subunit alpha
749	 49.23	0	902464..903438	+	324	148652566	-	PsycPRwf_0757	-	acetyl-CoA carboxylase, carboxyl transferase, beta subunit
750	 47.57	0	903579..904934	+	451	148652567	-	PsycPRwf_0758	-	FolC bifunctional protein
751	 46.85	0	905215..906819	+	534	148652568	-	PsycPRwf_0759	-	outer membrane efflux protein
752	 46.81	0	906874..909477	+	867	148652569	-	PsycPRwf_0760	-	ABC transporter related
753	 45.73	0	909480..910649	+	389	148652570	-	PsycPRwf_0761	-	HlyD family type I secretion membrane fusion protein
754	 48.60	0	911386..912813	+	475	148652571	-	PsycPRwf_0762	-	aldehyde dehydrogenase
755	 47.54	0	912969..913496	-	175	148652572	-	PsycPRwf_0763	-	BadM/Rrf2 family transcriptional regulator
756	 47.62	0	913622..914062	+	146	148652573	-	PsycPRwf_0764	-	hypothetical protein
757	 45.37	0	914138..915367	-	409	148652574	-	PsycPRwf_0765	-	NnrS family protein
758	 47.97	0	915965..916777	+	270	148652575	-	PsycPRwf_0766	-	UBA/THIF-type NAD/FAD binding protein
759	 46.42	0	916774..918072	-	432	148652576	-	PsycPRwf_0767	-	hypothetical protein
760	 45.83	0	918373..918876	-	167	148652577	-	PsycPRwf_0768	-	3-dehydroquinate dehydratase
761	 41.67	-1	919461..919676	+	71	148652578	-	PsycPRwf_0769	-	cold-shock DNA-binding domain-containing protein
762	 44.97	0	919998..921149	+	383	148652579	-	PsycPRwf_0770	-	DEAD/DEAH box helicase domain-containing protein
763	 48.70	0	921173..922207	-	344	148652580	-	PsycPRwf_0771	-	hypothetical protein
764	 49.38	+1	922259..922501	-	80	148652581	-	PsycPRwf_0772	-	cytochrome oxidase maturation protein, cbb3-type
765	 48.50	0	922729..923631	-	300	148652582	-	PsycPRwf_0773	-	hypothetical protein
766	 48.96	0	923771..924922	-	383	148652583	-	PsycPRwf_0774	-	UDP-N-acetylenolpyruvoylglucosamine reductase
767	 49.30	0	924995..925495	-	166	148652584	-	PsycPRwf_0775	-	protein tyrosine phosphatase
768	 51.52	+1	925681..926109	-	142	148652585	-	PsycPRwf_0776	-	RNA-binding S4 domain-containing protein
769	 47.89	0	926160..926585	-	141	148652586	-	PsycPRwf_0777	-	TonB family protein
770	 48.84	0	926589..928142	-	517	148652587	-	PsycPRwf_0778	-	threonine dehydratase
771	 46.67	0	928487..929146	+	219	148652588	-	PsycPRwf_0779	-	ribose-5-phosphate isomerase A
772	 46.93	0	929253..930083	+	276	148652589	-	PsycPRwf_0780	-	alpha/beta hydrolase fold
773	 47.77	0	930133..931053	-	306	148652590	-	PsycPRwf_0781	-	ornithine carbamoyltransferase
774	 49.69	+1	931254..932378	-	374	148652591	-	PsycPRwf_0782	-	alanine racemase
775	 50.03	+1	932518..934176	-	552	148652592	-	PsycPRwf_0783	-	hypothetical protein
776	 48.27	0	934423..935145	-	240	148652593	-	PsycPRwf_0784	-	hypothetical protein
777	 46.43	0	935219..936340	-	373	148652594	-	PsycPRwf_0785	-	ubiquinone/menaquinone biosynthesis methyltransferase
778	 43.51	0	936585..937262	-	225	148652595	-	PsycPRwf_0786	-	hypothetical protein
779	 48.53	0	937687..939357	+	556	148652596	-	PsycPRwf_0787	-	hypothetical protein
780	 45.46	0	939611..941218	+	535	148652597	-	PsycPRwf_0788	-	phosphate transporter
781	 43.02	0	941321..941836	-	171	148652598	-	PsycPRwf_0789	-	hypothetical protein
782	 50.00	+1	942058..943893	+	611	148652599	-	PsycPRwf_0790	-	single-stranded-DNA-specific exonuclease RecJ
783	 43.08	0	943913..944548	-	211	148652600	-	PsycPRwf_0791	-	hypothetical protein
784	 44.74	0	944782..945228	-	148	148652601	-	PsycPRwf_0792	-	ClpXP protease specificity-enhancing factor
785	 44.07	0	945291..945905	-	204	148652602	-	PsycPRwf_0793	-	glutathione S-transferase domain-containing protein
786	 45.83	0	946096..946815	-	239	148652603	-	PsycPRwf_0794	-	cytochrome c1
787	 43.39	0	946815..948047	-	410	148652604	-	PsycPRwf_0795	-	cytochrome b/b6 domain-containing protein
788	 48.53	0	948044..948655	-	203	148652605	-	PsycPRwf_0796	-	ubiquinol-cytochrome c reductase, iron-sulfur subunit
789	 42.89	0	948936..949322	-	128	148652606	rpsI	PsycPRwf_0797	-	30S ribosomal protein S9
790	 43.36	0	949344..949772	-	142	148652607	rplM	PsycPRwf_0798	-	50S ribosomal protein L13
791	 46.78	0	949959..950687	-	242	148652608	-	PsycPRwf_0799	-	putative methyltransferase
792	 48.16	0	950754..952790	-	678	148652609	-	PsycPRwf_0800	-	peptidoglycan glycosyltransferase
793	 45.50	0	953189..954520	+	443	148652610	-	PsycPRwf_0801	-	hypothetical protein
794	 48.51	0	955013..956962	+	649	148652611	-	PsycPRwf_0802	-	cytochrome c-type biogenesis protein CcmF
795	 45.73	0	957036..957656	+	206	148652612	-	PsycPRwf_0803	-	periplasmic protein thiol--disulphide oxidoreductase DsbE
796	 45.50	0	957653..958285	+	210	148652613	-	PsycPRwf_0804	-	cytochrome C biogenesis protein
797	 47.18	0	958371..959786	+	471	148652614	-	PsycPRwf_0805	-	cytochrome c biogenesis factor-like protein
798	 43.68	0	960203..960859	+	218	148652615	-	PsycPRwf_0806	-	nucleoside-triphosphate--adenylate kinase
799	 45.18	0	960943..961398	-	151	148652616	-	PsycPRwf_0807	-	preprotein translocase subunit SecB
800	 39.39	-1	961492..961755	-	87	148652617	-	PsycPRwf_0808	-	glutaredoxin 3
801	 46.85	0	961969..962397	-	142	148652618	-	PsycPRwf_0809	-	rhodanese domain-containing protein
802	 49.42	+1	962523..963647	-	374	148652619	-	PsycPRwf_0810	-	ribosome small subunit-dependent GTPase A
803	 43.64	0	964202..964783	+	193	148652620	-	PsycPRwf_0811	-	oligoribonuclease
804	 46.02	0	964807..965697	-	296	148652621	-	PsycPRwf_0812	-	UDP-2,3-diacylglucosamine hydrolase
805	 43.59	0	965716..966300	-	194	148652622	-	PsycPRwf_0813	-	peptidylprolyl isomerase
806	 46.27	0	966658..968451	+	597	148652623	-	PsycPRwf_0814	-	glutaminyl-tRNA synthetase
807	 47.98	0	968550..970181	-	543	148652624	-	PsycPRwf_0815	-	bifunctional HTH-domain containing protein/aminotransferase
808	 51.54	+1	970615..971037	+	140	148652625	-	PsycPRwf_0816	-	methionine-R-sulfoxide reductase
809	 42.93	0	971267..971860	+	197	148652626	-	PsycPRwf_0817	-	6-pyruvoyl-tetrahydropterin synthase-like protein
810	 51.65	+1	971923..972408	+	161	148652627	-	PsycPRwf_0818	-	hypothetical protein
811	 49.77	+1	972509..974461	+	650	148652628	-	PsycPRwf_0819	-	ATPase domain-containing protein
812	 47.36	0	974546..975643	+	365	148652629	-	PsycPRwf_0820	-	tRNA delta(2)-isopentenylpyrophosphate transferase
813	 49.34	+1	976013..976618	+	201	148652630	-	PsycPRwf_0821	-	RNA chaperone Hfq
814	 49.85	+1	976910..977908	+	332	148652631	-	PsycPRwf_0822	-	KpsF/GutQ family protein
815	 43.56	0	978038..978565	+	175	148652632	-	PsycPRwf_0823	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
816	 43.88	0	978614..979201	+	195	148652633	-	PsycPRwf_0824	-	hypothetical protein
817	 48.95	0	979423..979896	+	157	148652634	-	PsycPRwf_0825	-	cell envelope biogenesis YhbN
818	 50.61	+1	979900..980715	+	271	148652635	-	PsycPRwf_0826	-	ABC transporter related
819	 51.76	+1	981017..982465	+	482	148652636	-	PsycPRwf_0827	-	DNA repair protein RadA
820	 51.70	+1	982484..983278	-	264	148652637	-	PsycPRwf_0828	-	phosphomethylpyrimidine kinase
821	 49.53	+1	983327..983968	-	213	148652638	-	PsycPRwf_0829	-	thiamine-phosphate pyrophosphorylase
822	 52.06	+1	983961..984761	-	266	148652639	-	PsycPRwf_0830	-	hydroxyethylthiazole kinase
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.