IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
657	 47.66	0	801129..802643	+	504	148652474	-	PsycPRwf_0662	-	major facilitator transporter
658	 45.91	0	802804..803463	-	219	148652475	-	PsycPRwf_0663	-	two component LuxR family transcriptional regulator
659	 44.05	0	803592..805514	-	640	148652476	-	PsycPRwf_0664	-	integral membrane sensor signal transduction histidine kinase
660	 48.45	0	805820..807202	+	460	148652477	-	PsycPRwf_0665	-	nitrite transporter
661	 47.30	0	811540..813078	+	512	148652478	-	PsycPRwf_0667	-	nitrate reductase, beta subunit
662	 47.80	0	813080..813943	+	287	148652479	-	PsycPRwf_0668	-	nitrate reductase molybdenum cofactor assembly chaperone
663	 45.59	0	813956..814681	+	241	148652480	-	PsycPRwf_0669	-	respiratory nitrate reductase, gamma subunit
664	 46.87	0	814874..816055	+	393	148652481	-	PsycPRwf_0670	-	globin
665	 46.86	0	816170..817123	+	317	148652482	-	PsycPRwf_0671	-	PpiC-type peptidyl-prolyl cis-trans isomerase
666	 44.30	0	817190..817645	+	151	148652483	-	PsycPRwf_0672	-	hypothetical protein
667	 45.36	0	817706..818104	+	132	148652484	-	PsycPRwf_0673	-	hypothetical protein
668	 45.75	0	818334..818792	+	152	148652485	-	PsycPRwf_0674	-	arsenate reductase
669	 45.17	0	819045..819365	+	106	148652486	-	PsycPRwf_0675	-	FeoA family protein
670	 48.67	0	819423..821333	+	636	148652487	-	PsycPRwf_0676	-	ferrous iron transport protein B
671	 49.36	+1	821586..822290	-	234	148652488	-	PsycPRwf_0677	-	fumarylacetoacetate (FAA) hydrolase
672	 47.38	0	822507..823154	+	215	148652489	-	PsycPRwf_0678	-	glutathione S-transferase domain-containing protein
673	 47.06	0	823212..824078	-	288	148652490	-	PsycPRwf_0679	-	ABC transporter related
674	 45.33	0	824129..824803	-	224	148652491	-	PsycPRwf_0680	-	polar amino acid ABC transporter, inner membrane subunit
675	 45.38	0	824800..825546	-	248	148652492	-	PsycPRwf_0681	-	polar amino acid ABC transporter, inner membrane subunit
676	 43.08	0	825683..826687	-	334	148652493	-	PsycPRwf_0682	-	extracellular solute-binding protein
677	 48.15	0	827080..828078	-	332	148652494	-	PsycPRwf_0683	-	diaminopimelate dehydrogenase
678	 32.96	-2	828717..828986	-	89	148652495	-	PsycPRwf_0684	-	XRE family transcriptional regulator
679	 42.13	-1	829091..829306	+	71	148652496	-	PsycPRwf_0685	-	hypothetical protein
680	 41.04	-1	829315..830508	+	397	148652497	-	PsycPRwf_0686	-	phage integrase family protein
681	 38.14	-2	830511..830801	+	96	148652498	-	PsycPRwf_0687	-	hypothetical protein
682	 38.89	-2	831644..831751	-	35	148652499	-	PsycPRwf_0688	-	hypothetical protein
683	 41.57	-1	831815..832081	+	88	148652500	-	PsycPRwf_0689	-	Serine protease inhibitor-like protein
684	 43.49	0	832465..833724	-	419	148652501	-	PsycPRwf_0690	-	oxidoreductase FAD-binding subunit
685	 44.83	0	834047..834655	+	202	148652502	-	PsycPRwf_0691	-	cytochrome B561
686	 45.48	0	834675..835349	+	224	148652503	-	PsycPRwf_0692	-	two component transcriptional regulator
687	 46.11	0	835414..836877	+	487	148652504	-	PsycPRwf_0693	-	integral membrane sensor signal transduction histidine kinase
688	 46.53	0	836977..837567	+	196	148652505	-	PsycPRwf_0694	-	hypothetical protein
689	 45.95	0	837542..837874	+	110	148652506	-	PsycPRwf_0695	-	hypothetical protein
690	 47.37	0	837930..839012	+	360	148652507	-	PsycPRwf_0696	-	ApbE family lipoprotein
691	 42.69	0	839076..839759	+	227	148652508	-	PsycPRwf_0697	-	ferric reductase-like protein
692	 47.29	0	839841..840542	+	233	148652509	-	PsycPRwf_0698	-	hypothetical protein
693	 37.18	-2	840904..841734	-	276	148652510	-	PsycPRwf_0699	-	cation efflux protein
694	 39.74	-1	841813..842514	+	233	148652511	-	PsycPRwf_0700	-	IS1 transposase
695	 37.23	-2	842604..843245	+	213	148652512	-	PsycPRwf_0701	-	hypothetical protein
696	 44.71	0	843368..844237	-	289	148652513	-	PsycPRwf_0702	-	transposase, IS4 family protein
697	 45.65	0	844420..845304	-	294	148652514	-	PsycPRwf_0703	-	prolipoprotein diacylglyceryl transferase
698	 38.63	-2	845488..846960	-	490	148652515	-	PsycPRwf_0704	-	integral membrane sensor signal transduction histidine kinase
699	 41.22	-1	846962..847696	-	244	148652516	-	PsycPRwf_0705	-	two component heavy metal response transcriptional regulator
700	 37.92	-2	848022..848348	+	108	148652517	-	PsycPRwf_0706	-	hypothetical protein
701	 39.19	-1	848512..848784	+	90	148652518	-	PsycPRwf_0707	-	hypothetical protein
702	 44.95	0	848846..849439	+	197	148652519	-	PsycPRwf_0708	-	hypothetical protein
703	 45.85	0	849605..850243	+	212	148652520	-	PsycPRwf_0709	-	hypothetical protein
704	 46.22	0	850338..852044	+	568	148652521	-	PsycPRwf_0710	-	CopA family copper resistance protein
705	 43.76	0	852070..853134	+	354	148652522	-	PsycPRwf_0711	-	copper resistance B precursor
706	 38.99	-2	853230..853706	+	158	148652523	-	PsycPRwf_0712	-	hypothetical protein
707	 45.93	0	854282..856900	+	872	148652524	-	PsycPRwf_0713	-	heavy metal translocating P-type ATPase
708	 42.11	-1	856981..857265	+	94	148652525	-	PsycPRwf_0714	-	twin arginine-targeting protein translocase
709	 45.48	0	857321..857707	+	128	148652526	-	PsycPRwf_0715	-	twin-arginine translocation protein, TatB subunit
710	 38.97	-2	857704..858573	+	289	148652527	-	PsycPRwf_0716	-	Sec-independent protein translocase, TatC subunit
711	 47.60	0	858664..859953	+	429	148652528	-	PsycPRwf_0717	-	hypothetical protein
712	 47.85	0	860198..860383	+	61	148652529	-	PsycPRwf_0718	-	hypothetical protein
713	 43.60	0	860846..861439	-	197	148652530	-	PsycPRwf_0719	-	resolvase domain-containing protein
714	 46.69	0	861737..862717	-	326	148652531	-	PsycPRwf_0720	-	AraC family transcriptional regulator
715	 44.44	0	862824..863372	+	182	148652532	-	PsycPRwf_0721	-	isochorismatase hydrolase
716	 45.57	0	863452..864366	+	304	148652533	-	PsycPRwf_0722	-	Zn-dependent hydrolase of the beta-lactamase fold-like protein
717	 41.62	-1	864730..865851	-	373	148652534	-	PsycPRwf_0723	-	filamentation induced by cAMP protein Fic
718	 42.59	0	866779..866994	+	71	148652535	-	PsycPRwf_0725	-	hypothetical protein
719	 41.71	-1	867005..868210	+	401	148652536	-	PsycPRwf_0726	-	phage integrase family protein
720	 40.00	-1	868197..868496	+	99	148652537	-	PsycPRwf_0727	-	hypothetical protein
721	 38.24	-2	870006..872429	+	807	148652538	-	PsycPRwf_0728	-	hypothetical protein
722	 34.90	-2	872395..873222	+	275	148652539	-	PsycPRwf_0729	-	hypothetical protein
723	 41.41	-1	873285..873581	+	98	148652540	-	PsycPRwf_0730	-	transposase IS3/IS911 family protein
724	 43.86	0	873596..874450	+	284	148652541	-	PsycPRwf_0731	-	integrase catalytic subunit
725	 35.81	-2	874540..875265	+	241	148652542	-	PsycPRwf_0732	-	GntR family transcriptional regulator
726	 39.06	-2	875419..876081	-	220	148652543	-	PsycPRwf_0733	-	hypothetical protein
727	 45.43	0	876371..877015	-	214	148652544	-	PsycPRwf_0734	-	maleylacetoacetate isomerase
728	 45.32	0	877225..878058	+	277	148652545	-	PsycPRwf_0735	-	regulatory protein, IclR
729	 41.80	-1	878447..879355	-	302	148652546	-	PsycPRwf_0737	-	LysR family transcriptional regulator
730	 47.43	0	879585..880634	+	349	148652547	-	PsycPRwf_0738	-	cupin 2 domain-containing protein
731	 43.21	0	880815..881462	+	215	148652548	-	PsycPRwf_0739	-	maleylacetoacetate isomerase
732	 44.54	0	881501..882205	+	234	148652549	-	PsycPRwf_0740	-	fumarylacetoacetate (FAA) hydrolase
733	 40.85	-1	882443..883759	+	438	148652550	-	PsycPRwf_0741	-	major facilitator transporter
734	 46.99	0	883866..885344	+	492	148652551	-	PsycPRwf_0742	-	aldehyde dehydrogenase
735	 48.79	0	885386..887041	+	551	148652552	-	PsycPRwf_0743	-	thiamine pyrophosphate binding domain-containing protein
736	 48.17	0	887311..888348	+	345	148652553	-	PsycPRwf_0744	-	transport system permease protein
737	 46.41	0	888345..889568	+	407	148652554	-	PsycPRwf_0745	-	periplasmic binding protein
738	 46.46	0	889601..890377	+	258	148652555	-	PsycPRwf_0746	-	ABC transporter related
739	 45.32	0	890421..891254	-	277	148652556	-	PsycPRwf_0747	-	hypothetical protein
740	 42.68	0	891455..892021	-	188	148652557	-	PsycPRwf_0748	-	hypothetical protein
741	 45.70	0	892054..893379	-	441	148652558	-	PsycPRwf_0749	-	TrkH family potassium uptake protein
742	 44.04	0	893479..894132	-	217	148652559	-	PsycPRwf_0750	-	TrkA domain-containing protein
743	 47.72	0	894418..896148	-	576	148652560	-	PsycPRwf_0751	-	prolyl-tRNA synthetase
744	 49.39	+1	896651..897385	+	244	148652561	-	PsycPRwf_0752	-	hypothetical protein
745	 43.56	0	897405..899057	-	550	148652562	-	PsycPRwf_0753	-	deoxyribodipyrimidine photo-lyase
746	 48.48	0	899339..899998	+	219	148652563	-	PsycPRwf_0754	-	phosphoribosylanthranilate isomerase
747	 49.36	+1	900126..901373	+	415	148652564	-	PsycPRwf_0755	-	tryptophan synthase subunit beta
748	 49.40	+1	901445..902272	+	275	148652565	-	PsycPRwf_0756	-	tryptophan synthase subunit alpha
749	 49.23	0	902464..903438	+	324	148652566	-	PsycPRwf_0757	-	acetyl-CoA carboxylase, carboxyl transferase, beta subunit
750	 47.57	0	903579..904934	+	451	148652567	-	PsycPRwf_0758	-	FolC bifunctional protein
751	 46.85	0	905215..906819	+	534	148652568	-	PsycPRwf_0759	-	outer membrane efflux protein
752	 46.81	0	906874..909477	+	867	148652569	-	PsycPRwf_0760	-	ABC transporter related
753	 45.73	0	909480..910649	+	389	148652570	-	PsycPRwf_0761	-	HlyD family type I secretion membrane fusion protein
754	 48.60	0	911386..912813	+	475	148652571	-	PsycPRwf_0762	-	aldehyde dehydrogenase
755	 47.54	0	912969..913496	-	175	148652572	-	PsycPRwf_0763	-	BadM/Rrf2 family transcriptional regulator
756	 47.62	0	913622..914062	+	146	148652573	-	PsycPRwf_0764	-	hypothetical protein
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.