IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
633	 47.24	0	768315..769961	-	548	148652450	groEL	PsycPRwf_0638	-	chaperonin GroEL
634	 43.64	0	770108..770398	-	96	148652451	groES	PsycPRwf_0639	-	co-chaperonin GroES
635	 43.19	0	770731..771288	+	185	148652452	-	PsycPRwf_0640	-	hypothetical protein
636	 46.19	0	771435..771644	+	69	148652453	-	PsycPRwf_0641	-	hypothetical protein
637	 48.14	0	771864..773072	-	402	148652454	-	PsycPRwf_0642	-	succinyl-diaminopimelate desuccinylase
638	 45.90	0	773196..774110	-	304	148652455	-	PsycPRwf_0643	-	2OG-Fe(II) oxygenase
639	 45.21	0	774303..775178	+	291	148652456	-	PsycPRwf_0644	-	hypothetical protein
640	 44.95	0	775237..776088	+	283	148652457	-	PsycPRwf_0645	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
641	 45.08	0	782045..782827	+	260	148652458	-	PsycPRwf_0646	-	short-chain dehydrogenase/reductase SDR
642	 48.07	0	783102..783515	+	137	148652459	-	PsycPRwf_0647	-	OsmC family protein
643	 48.60	0	783517..783981	+	154	148652460	-	PsycPRwf_0648	-	hypothetical protein
644	 45.48	0	784052..784726	+	224	148652461	-	PsycPRwf_0649	-	hypothetical protein
645	 46.87	0	784788..786560	-	590	148652462	-	PsycPRwf_0650	-	potassium/proton antiporter
646	 45.74	0	786697..788187	-	496	148652463	-	PsycPRwf_0651	-	ABC-2 type transporter
647	 49.12	0	788187..789662	-	491	148652464	-	PsycPRwf_0652	-	hypothetical protein
648	 48.98	0	789691..790764	-	357	148652465	-	PsycPRwf_0653	-	secretion protein HlyD family protein
649	 47.73	0	790825..792588	-	587	148652466	-	PsycPRwf_0654	-	outer membrane efflux protein
650	 44.44	0	793124..793870	-	248	148652467	-	PsycPRwf_0655	-	hypothetical protein
651	 48.19	0	794166..795686	-	506	148652468	-	PsycPRwf_0656	-	catalase
652	 45.03	0	796102..796443	+	113	148652469	-	PsycPRwf_0657	-	small multidrug resistance protein
653	 46.33	0	796464..797225	-	253	148652470	-	PsycPRwf_0658	-	ABC transporter related
654	 47.66	0	797321..798430	-	369	148652471	-	PsycPRwf_0659	-	transport system permease protein
655	 49.86	+1	798488..799546	-	352	148652472	-	PsycPRwf_0660	-	transport system permease protein
656	 45.35	0	799592..800656	-	354	148652473	-	PsycPRwf_0661	-	periplasmic binding protein
657	 47.66	0	801129..802643	+	504	148652474	-	PsycPRwf_0662	-	major facilitator transporter
658	 45.91	0	802804..803463	-	219	148652475	-	PsycPRwf_0663	-	two component LuxR family transcriptional regulator
659	 44.05	0	803592..805514	-	640	148652476	-	PsycPRwf_0664	-	integral membrane sensor signal transduction histidine kinase
660	 48.45	0	805820..807202	+	460	148652477	-	PsycPRwf_0665	-	nitrite transporter
661	 47.30	0	811540..813078	+	512	148652478	-	PsycPRwf_0667	-	nitrate reductase, beta subunit
662	 47.80	0	813080..813943	+	287	148652479	-	PsycPRwf_0668	-	nitrate reductase molybdenum cofactor assembly chaperone
663	 45.59	0	813956..814681	+	241	148652480	-	PsycPRwf_0669	-	respiratory nitrate reductase, gamma subunit
664	 46.87	0	814874..816055	+	393	148652481	-	PsycPRwf_0670	-	globin
665	 46.86	0	816170..817123	+	317	148652482	-	PsycPRwf_0671	-	PpiC-type peptidyl-prolyl cis-trans isomerase
666	 44.30	0	817190..817645	+	151	148652483	-	PsycPRwf_0672	-	hypothetical protein
667	 45.36	0	817706..818104	+	132	148652484	-	PsycPRwf_0673	-	hypothetical protein
668	 45.75	0	818334..818792	+	152	148652485	-	PsycPRwf_0674	-	arsenate reductase
669	 45.17	0	819045..819365	+	106	148652486	-	PsycPRwf_0675	-	FeoA family protein
670	 48.67	0	819423..821333	+	636	148652487	-	PsycPRwf_0676	-	ferrous iron transport protein B
671	 49.36	+1	821586..822290	-	234	148652488	-	PsycPRwf_0677	-	fumarylacetoacetate (FAA) hydrolase
672	 47.38	0	822507..823154	+	215	148652489	-	PsycPRwf_0678	-	glutathione S-transferase domain-containing protein
673	 47.06	0	823212..824078	-	288	148652490	-	PsycPRwf_0679	-	ABC transporter related
674	 45.33	0	824129..824803	-	224	148652491	-	PsycPRwf_0680	-	polar amino acid ABC transporter, inner membrane subunit
675	 45.38	0	824800..825546	-	248	148652492	-	PsycPRwf_0681	-	polar amino acid ABC transporter, inner membrane subunit
676	 43.08	0	825683..826687	-	334	148652493	-	PsycPRwf_0682	-	extracellular solute-binding protein
677	 48.15	0	827080..828078	-	332	148652494	-	PsycPRwf_0683	-	diaminopimelate dehydrogenase
678	 32.96	-2	828717..828986	-	89	148652495	-	PsycPRwf_0684	-	XRE family transcriptional regulator
679	 42.13	-1	829091..829306	+	71	148652496	-	PsycPRwf_0685	-	hypothetical protein
680	 41.04	-1	829315..830508	+	397	148652497	-	PsycPRwf_0686	-	phage integrase family protein
681	 38.14	-2	830511..830801	+	96	148652498	-	PsycPRwf_0687	-	hypothetical protein
682	 38.89	-2	831644..831751	-	35	148652499	-	PsycPRwf_0688	-	hypothetical protein
683	 41.57	-1	831815..832081	+	88	148652500	-	PsycPRwf_0689	-	Serine protease inhibitor-like protein
684	 43.49	0	832465..833724	-	419	148652501	-	PsycPRwf_0690	-	oxidoreductase FAD-binding subunit
685	 44.83	0	834047..834655	+	202	148652502	-	PsycPRwf_0691	-	cytochrome B561
686	 45.48	0	834675..835349	+	224	148652503	-	PsycPRwf_0692	-	two component transcriptional regulator
687	 46.11	0	835414..836877	+	487	148652504	-	PsycPRwf_0693	-	integral membrane sensor signal transduction histidine kinase
688	 46.53	0	836977..837567	+	196	148652505	-	PsycPRwf_0694	-	hypothetical protein
689	 45.95	0	837542..837874	+	110	148652506	-	PsycPRwf_0695	-	hypothetical protein
690	 47.37	0	837930..839012	+	360	148652507	-	PsycPRwf_0696	-	ApbE family lipoprotein
691	 42.69	0	839076..839759	+	227	148652508	-	PsycPRwf_0697	-	ferric reductase-like protein
692	 47.29	0	839841..840542	+	233	148652509	-	PsycPRwf_0698	-	hypothetical protein
693	 37.18	-2	840904..841734	-	276	148652510	-	PsycPRwf_0699	-	cation efflux protein
694	 39.74	-1	841813..842514	+	233	148652511	-	PsycPRwf_0700	-	IS1 transposase
695	 37.23	-2	842604..843245	+	213	148652512	-	PsycPRwf_0701	-	hypothetical protein
696	 44.71	0	843368..844237	-	289	148652513	-	PsycPRwf_0702	-	transposase, IS4 family protein
697	 45.65	0	844420..845304	-	294	148652514	-	PsycPRwf_0703	-	prolipoprotein diacylglyceryl transferase
698	 38.63	-2	845488..846960	-	490	148652515	-	PsycPRwf_0704	-	integral membrane sensor signal transduction histidine kinase
699	 41.22	-1	846962..847696	-	244	148652516	-	PsycPRwf_0705	-	two component heavy metal response transcriptional regulator
700	 37.92	-2	848022..848348	+	108	148652517	-	PsycPRwf_0706	-	hypothetical protein
701	 39.19	-1	848512..848784	+	90	148652518	-	PsycPRwf_0707	-	hypothetical protein
702	 44.95	0	848846..849439	+	197	148652519	-	PsycPRwf_0708	-	hypothetical protein
703	 45.85	0	849605..850243	+	212	148652520	-	PsycPRwf_0709	-	hypothetical protein
704	 46.22	0	850338..852044	+	568	148652521	-	PsycPRwf_0710	-	CopA family copper resistance protein
705	 43.76	0	852070..853134	+	354	148652522	-	PsycPRwf_0711	-	copper resistance B precursor
706	 38.99	-2	853230..853706	+	158	148652523	-	PsycPRwf_0712	-	hypothetical protein
707	 45.93	0	854282..856900	+	872	148652524	-	PsycPRwf_0713	-	heavy metal translocating P-type ATPase
708	 42.11	-1	856981..857265	+	94	148652525	-	PsycPRwf_0714	-	twin arginine-targeting protein translocase
709	 45.48	0	857321..857707	+	128	148652526	-	PsycPRwf_0715	-	twin-arginine translocation protein, TatB subunit
710	 38.97	-2	857704..858573	+	289	148652527	-	PsycPRwf_0716	-	Sec-independent protein translocase, TatC subunit
711	 47.60	0	858664..859953	+	429	148652528	-	PsycPRwf_0717	-	hypothetical protein
712	 47.85	0	860198..860383	+	61	148652529	-	PsycPRwf_0718	-	hypothetical protein
713	 43.60	0	860846..861439	-	197	148652530	-	PsycPRwf_0719	-	resolvase domain-containing protein
714	 46.69	0	861737..862717	-	326	148652531	-	PsycPRwf_0720	-	AraC family transcriptional regulator
715	 44.44	0	862824..863372	+	182	148652532	-	PsycPRwf_0721	-	isochorismatase hydrolase
716	 45.57	0	863452..864366	+	304	148652533	-	PsycPRwf_0722	-	Zn-dependent hydrolase of the beta-lactamase fold-like protein
717	 41.62	-1	864730..865851	-	373	148652534	-	PsycPRwf_0723	-	filamentation induced by cAMP protein Fic
718	 42.59	0	866779..866994	+	71	148652535	-	PsycPRwf_0725	-	hypothetical protein
719	 41.71	-1	867005..868210	+	401	148652536	-	PsycPRwf_0726	-	phage integrase family protein
720	 40.00	-1	868197..868496	+	99	148652537	-	PsycPRwf_0727	-	hypothetical protein
721	 38.24	-2	870006..872429	+	807	148652538	-	PsycPRwf_0728	-	hypothetical protein
722	 34.90	-2	872395..873222	+	275	148652539	-	PsycPRwf_0729	-	hypothetical protein
723	 41.41	-1	873285..873581	+	98	148652540	-	PsycPRwf_0730	-	transposase IS3/IS911 family protein
724	 43.86	0	873596..874450	+	284	148652541	-	PsycPRwf_0731	-	integrase catalytic subunit
725	 35.81	-2	874540..875265	+	241	148652542	-	PsycPRwf_0732	-	GntR family transcriptional regulator
726	 39.06	-2	875419..876081	-	220	148652543	-	PsycPRwf_0733	-	hypothetical protein
727	 45.43	0	876371..877015	-	214	148652544	-	PsycPRwf_0734	-	maleylacetoacetate isomerase
728	 45.32	0	877225..878058	+	277	148652545	-	PsycPRwf_0735	-	regulatory protein, IclR
729	 41.80	-1	878447..879355	-	302	148652546	-	PsycPRwf_0737	-	LysR family transcriptional regulator
730	 47.43	0	879585..880634	+	349	148652547	-	PsycPRwf_0738	-	cupin 2 domain-containing protein
731	 43.21	0	880815..881462	+	215	148652548	-	PsycPRwf_0739	-	maleylacetoacetate isomerase
732	 44.54	0	881501..882205	+	234	148652549	-	PsycPRwf_0740	-	fumarylacetoacetate (FAA) hydrolase
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.