IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
567	 49.63	+1	687016..688095	-	359	148652384	-	PsycPRwf_0572	-	cation diffusion facilitator family transporter
568	 49.89	+1	688226..690550	-	774	148652385	-	PsycPRwf_0573	-	primosomal protein N'
569	 47.47	0	690651..691046	-	131	148652386	-	PsycPRwf_0574	-	putative endoribonuclease L-PSP
570	 46.70	0	691102..693285	-	727	148652387	-	PsycPRwf_0575	-	metal dependent phosphohydrolase
571	 49.04	0	693851..694111	-	86	148652388	-	PsycPRwf_0576	-	DNA-directed RNA polymerase, omega subunit
572	 47.97	0	694250..694864	-	204	148652389	-	PsycPRwf_0577	-	guanylate kinase
573	 48.28	0	695083..696039	+	318	148652390	-	PsycPRwf_0578	-	hydroxymethylbutenyl pyrophosphate reductase
574	 53.38	+2	696071..696883	+	270	148652391	-	PsycPRwf_0579	-	hypothetical protein
575	 45.46	0	697117..699078	+	653	148652392	-	PsycPRwf_0580	-	heat shock protein 90
576	 45.42	0	699279..700502	+	407	148652393	-	PsycPRwf_0581	-	nicotinate phosphoribosyltransferase
577	 46.88	0	700730..702493	+	587	148652394	-	PsycPRwf_0582	-	acyl-CoA synthetase
578	 46.32	0	702758..703612	+	284	148652395	-	PsycPRwf_0583	-	S-formylglutathione hydrolase
579	 47.82	0	703692..704402	+	236	148652396	-	PsycPRwf_0584	-	ribulose-phosphate 3-epimerase
580	 46.31	0	704472..704810	+	112	148652397	-	PsycPRwf_0585	-	hypothetical protein
581	 43.27	0	704855..705166	+	103	148652398	-	PsycPRwf_0586	-	hypothetical protein
582	 43.12	0	705355..705681	+	108	148652399	-	PsycPRwf_0587	-	hypothetical protein
583	 36.54	-2	705805..705960	-	51	148652400	rpmG	PsycPRwf_0588	-	50S ribosomal protein L33
584	 42.62	0	706027..706263	-	78	148652401	rpmB	PsycPRwf_0589	-	50S ribosomal protein L28
585	 49.43	+1	706888..708285	+	465	148652402	-	PsycPRwf_0590	-	major facilitator transporter
586	 44.44	0	708398..709189	-	263	148652403	-	PsycPRwf_0591	-	cytochrome c assembly protein
587	 48.58	0	709652..711199	+	515	148652404	-	PsycPRwf_0592	-	signal recognition particle protein
588	 42.79	0	711315..712688	-	457	148652405	-	PsycPRwf_0593	-	major facilitator transporter
589	 47.84	0	712997..713251	-	84	148652406	-	PsycPRwf_0594	-	Na+-dependent transporter-like protein
590	 48.57	0	713707..717525	-	1272	148652407	metH	PsycPRwf_0595	-	B12-dependent methionine synthase
591	 45.47	0	717848..718498	+	216	148652408	-	PsycPRwf_0596	-	beta-Ig-H3/fasciclin
592	 42.44	-1	718572..720119	-	515	148652409	-	PsycPRwf_0597	-	amino acid carrier protein
593	 45.26	0	720680..721291	+	203	148652410	-	PsycPRwf_0598	-	LemA family protein
594	 50.46	+1	721534..722724	+	396	148652411	-	PsycPRwf_0599	-	hypothetical protein
595	 47.74	0	722882..723457	+	191	148652412	-	PsycPRwf_0600	-	hypothetical protein
596	 45.73	0	723588..724337	-	249	148652413	-	PsycPRwf_0601	-	silent information regulator protein Sir2
597	 43.19	0	724399..724824	+	141	148652414	-	PsycPRwf_0602	-	hypothetical protein
598	 41.76	-1	724858..725961	-	367	148652415	-	PsycPRwf_0603	-	IS605 family transposase OrfB
599	 44.41	0	726229..727203	+	324	148652416	-	PsycPRwf_0604	-	hypothetical protein
600	 49.92	+1	727833..728483	+	216	148652417	-	PsycPRwf_0605	-	cytochrome c, class I
601	 44.93	0	728854..729819	+	321	148652418	-	PsycPRwf_0606	-	ABC transporter related
602	 43.01	0	729816..730631	+	271	148652419	-	PsycPRwf_0607	-	ABC-2 type transporter
603	 47.40	0	730774..731676	+	300	148652420	queF	PsycPRwf_0608	-	7-cyano-7-deazaguanine reductase
604	 47.83	0	732673..734472	+	599	148652421	-	PsycPRwf_0609	-	acetolactate synthase 3 catalytic subunit
605	 45.05	0	734472..734966	+	164	148652422	-	PsycPRwf_0610	-	acetolactate synthase 3 regulatory subunit
606	 45.03	0	735076..736092	+	338	148652423	-	PsycPRwf_0611	-	ketol-acid reductoisomerase
607	 42.75	0	736283..736696	+	137	148652424	-	PsycPRwf_0612	-	hypothetical protein
608	 43.52	0	737109..737324	+	71	148652425	-	PsycPRwf_0613	-	cold-shock DNA-binding domain-containing protein
609	 42.93	0	737833..738582	+	249	148652426	-	PsycPRwf_0614	-	electron transfer flavoprotein, alpha/beta-subunit-like protein
610	 45.87	0	738765..739697	+	310	148652427	-	PsycPRwf_0615	-	electron transfer flavoprotein, alpha subunit-like protein
611	 48.37	0	739917..740468	+	183	148652428	-	PsycPRwf_0616	-	GCN5-related N-acetyltransferase
612	 48.46	0	740573..741418	-	281	148652429	-	PsycPRwf_0617	-	arginyl-tRNA-protein transferase
613	 49.01	0	741437..742246	-	269	148652430	aat	PsycPRwf_0618	-	leucyl/phenylalanyl-tRNA--protein transferase
614	 48.30	0	742552..743580	-	342	148652431	-	PsycPRwf_0619	-	thioredoxin reductase
615	 48.31	0	743957..747127	+	1056	148652432	-	PsycPRwf_0620	-	cell divisionFtsK/SpoIIIE
616	 44.35	0	747329..748036	+	235	148652433	-	PsycPRwf_0621	-	pirin domain-containing protein
617	 49.90	+1	748211..749701	+	496	148652434	-	PsycPRwf_0622	-	amidase
618	 47.09	0	749791..751077	-	428	148652435	-	PsycPRwf_0623	-	hypothetical protein
619	 49.85	+1	751593..753548	+	651	148652436	-	PsycPRwf_0624	-	acetate--CoA ligase
620	 50.24	+1	753819..755060	+	413	148652437	-	PsycPRwf_0625	-	NAD/FAD-dependent oxidoreductase-like protein
621	 40.11	-1	755209..756315	+	368	148652438	-	PsycPRwf_0626	-	IS605 family transposase OrfB
622	 47.47	0	756345..757412	-	355	148652439	-	PsycPRwf_0627	-	riboflavin biosynthesis protein RibF
623	 45.32	0	757606..758214	+	202	148652440	-	PsycPRwf_0628	-	GCN5-related N-acetyltransferase
624	 47.43	0	758251..759534	-	427	148652441	-	PsycPRwf_0629	-	sodium/hydrogen exchanger
625	 44.03	0	759636..761252	-	538	148652442	-	PsycPRwf_0630	-	putative ribonuclease BN
626	 52.43	+1	761522..762160	+	212	148652443	-	PsycPRwf_0631	-	flavodoxin/nitric oxide synthase
627	 45.37	0	762164..762595	+	143	148652444	-	PsycPRwf_0632	-	hypothetical protein
628	 42.54	-1	762682..763398	-	238	148652445	-	PsycPRwf_0633	-	hypothetical protein
629	 47.63	0	763681..765093	-	470	148652446	-	PsycPRwf_0634	-	NAD(P)(+) transhydrogenase (AB-specific)
630	 47.51	0	765090..765470	-	126	148652447	-	PsycPRwf_0635	-	NAD/NADP transhydrogenase alpha subunit-like protein
631	 49.38	+1	765575..766708	-	377	148652448	-	PsycPRwf_0636	-	NAD(P) transhydrogenase subunit alpha
632	 41.94	-1	767236..768048	+	270	148652449	-	PsycPRwf_0637	-	hypothetical protein
633	 47.24	0	768315..769961	-	548	148652450	groEL	PsycPRwf_0638	-	chaperonin GroEL
634	 43.64	0	770108..770398	-	96	148652451	groES	PsycPRwf_0639	-	co-chaperonin GroES
635	 43.19	0	770731..771288	+	185	148652452	-	PsycPRwf_0640	-	hypothetical protein
636	 46.19	0	771435..771644	+	69	148652453	-	PsycPRwf_0641	-	hypothetical protein
637	 48.14	0	771864..773072	-	402	148652454	-	PsycPRwf_0642	-	succinyl-diaminopimelate desuccinylase
638	 45.90	0	773196..774110	-	304	148652455	-	PsycPRwf_0643	-	2OG-Fe(II) oxygenase
639	 45.21	0	774303..775178	+	291	148652456	-	PsycPRwf_0644	-	hypothetical protein
640	 44.95	0	775237..776088	+	283	148652457	-	PsycPRwf_0645	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
641	 45.08	0	782045..782827	+	260	148652458	-	PsycPRwf_0646	-	short-chain dehydrogenase/reductase SDR
642	 48.07	0	783102..783515	+	137	148652459	-	PsycPRwf_0647	-	OsmC family protein
643	 48.60	0	783517..783981	+	154	148652460	-	PsycPRwf_0648	-	hypothetical protein
644	 45.48	0	784052..784726	+	224	148652461	-	PsycPRwf_0649	-	hypothetical protein
645	 46.87	0	784788..786560	-	590	148652462	-	PsycPRwf_0650	-	potassium/proton antiporter
646	 45.74	0	786697..788187	-	496	148652463	-	PsycPRwf_0651	-	ABC-2 type transporter
647	 49.12	0	788187..789662	-	491	148652464	-	PsycPRwf_0652	-	hypothetical protein
648	 48.98	0	789691..790764	-	357	148652465	-	PsycPRwf_0653	-	secretion protein HlyD family protein
649	 47.73	0	790825..792588	-	587	148652466	-	PsycPRwf_0654	-	outer membrane efflux protein
650	 44.44	0	793124..793870	-	248	148652467	-	PsycPRwf_0655	-	hypothetical protein
651	 48.19	0	794166..795686	-	506	148652468	-	PsycPRwf_0656	-	catalase
652	 45.03	0	796102..796443	+	113	148652469	-	PsycPRwf_0657	-	small multidrug resistance protein
653	 46.33	0	796464..797225	-	253	148652470	-	PsycPRwf_0658	-	ABC transporter related
654	 47.66	0	797321..798430	-	369	148652471	-	PsycPRwf_0659	-	transport system permease protein
655	 49.86	+1	798488..799546	-	352	148652472	-	PsycPRwf_0660	-	transport system permease protein
656	 45.35	0	799592..800656	-	354	148652473	-	PsycPRwf_0661	-	periplasmic binding protein
657	 47.66	0	801129..802643	+	504	148652474	-	PsycPRwf_0662	-	major facilitator transporter
658	 45.91	0	802804..803463	-	219	148652475	-	PsycPRwf_0663	-	two component LuxR family transcriptional regulator
659	 44.05	0	803592..805514	-	640	148652476	-	PsycPRwf_0664	-	integral membrane sensor signal transduction histidine kinase
660	 48.45	0	805820..807202	+	460	148652477	-	PsycPRwf_0665	-	nitrite transporter
661	 47.30	0	811540..813078	+	512	148652478	-	PsycPRwf_0667	-	nitrate reductase, beta subunit
662	 47.80	0	813080..813943	+	287	148652479	-	PsycPRwf_0668	-	nitrate reductase molybdenum cofactor assembly chaperone
663	 45.59	0	813956..814681	+	241	148652480	-	PsycPRwf_0669	-	respiratory nitrate reductase, gamma subunit
664	 46.87	0	814874..816055	+	393	148652481	-	PsycPRwf_0670	-	globin
665	 46.86	0	816170..817123	+	317	148652482	-	PsycPRwf_0671	-	PpiC-type peptidyl-prolyl cis-trans isomerase
666	 44.30	0	817190..817645	+	151	148652483	-	PsycPRwf_0672	-	hypothetical protein
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.