IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
518	 42.12	-1	625255..625698	+	147	148652335	-	PsycPRwf_0523	-	hypothetical protein
519	 50.86	+1	626072..627229	+	385	148652336	-	PsycPRwf_0524	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
520	 47.38	0	627401..628831	+	476	148652337	-	PsycPRwf_0525	-	UDP-N-acetylmuramate--alanine ligase
521	 47.15	0	628973..629971	+	332	148652338	-	PsycPRwf_0526	-	D-alanine--D-alanine ligase
522	 41.19	-1	630195..631136	+	313	148652339	-	PsycPRwf_0527	-	cell division protein FtsQ
523	 41.80	-1	631489..632787	+	432	148652340	-	PsycPRwf_0528	-	cell division protein FtsA
524	 45.31	0	632868..634061	+	397	148652341	-	PsycPRwf_0529	-	cell division protein FtsZ
525	 41.39	-1	634258..635151	+	297	148652342	lpxC	PsycPRwf_0530	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
526	 38.70	-2	635447..635986	-	179	148652343	-	PsycPRwf_0531	-	hypothetical protein
527	 44.49	0	636176..636901	+	241	148652344	-	PsycPRwf_0532	-	hypothetical protein
528	 47.32	0	637134..637469	-	111	148652345	-	PsycPRwf_0533	-	hypothetical protein
529	 48.34	0	637759..638391	+	210	148652346	-	PsycPRwf_0534	-	ribosomal RNA methyltransferase RrmJ/FtsJ
530	 46.82	0	638918..640801	+	627	148652347	-	PsycPRwf_0535	-	ATP-dependent metalloprotease FtsH
531	 47.59	0	640968..641879	+	303	148652348	-	PsycPRwf_0536	-	dihydropteroate synthase
532	 42.49	-1	641974..642246	+	90	148652349	-	PsycPRwf_0537	-	hypothetical protein
533	 47.81	0	642284..642739	+	151	148652350	-	PsycPRwf_0538	-	hypothetical protein
534	 49.28	0	642873..643562	+	229	148652351	-	PsycPRwf_0539	-	hypothetical protein
535	 46.90	0	643800..644492	+	230	148652352	-	PsycPRwf_0540	-	peptidase M22, glycoprotease
536	 45.77	0	644574..645425	+	283	148652353	-	PsycPRwf_0541	-	putative undecaprenol kinase
537	 49.72	+1	645507..646385	+	292	148652354	-	PsycPRwf_0542	-	hypothetical protein
538	 45.85	0	646489..647151	+	220	148652355	-	PsycPRwf_0543	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
539	 43.64	0	647280..647774	-	164	148652356	-	PsycPRwf_0544	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
540	 48.44	0	648200..652225	+	1341	148652357	-	PsycPRwf_0545	-	phosphoribosylformylglycinamidine synthase
541	 32.74	-2	652557..653894	+	445	148652358	-	PsycPRwf_0546	-	hypothetical protein
542	 35.04	-2	654540..654656	+	38	148652359	-	PsycPRwf_0547	-	hypothetical protein
543	 47.58	0	654873..655679	+	268	148652360	-	PsycPRwf_0548	-	peptidase M48, Ste24p
544	 44.34	0	655749..656675	-	308	148652361	-	PsycPRwf_0549	-	N-acetylmuramoyl-L-alanine amidase
545	 43.85	0	657155..657601	+	148	148652362	-	PsycPRwf_0550	-	hypothetical protein
546	 46.59	0	657776..658318	-	180	148652363	-	PsycPRwf_0551	-	membrane protein-like protein
547	 49.39	+1	658399..660447	-	682	148652364	-	PsycPRwf_0552	-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
548	 46.53	0	660577..661182	-	201	148652365	-	PsycPRwf_0553	-	DNA polymerase III subunit epsilon
549	 48.34	0	661247..663292	-	681	148652366	-	PsycPRwf_0554	-	signal-transduction protein
550	 49.59	+1	663433..664662	-	409	148652367	-	PsycPRwf_0555	-	hypothetical protein
551	 47.67	0	664723..667422	-	899	148652368	-	PsycPRwf_0556	-	metal dependent phosphohydrolase
552	 45.82	0	667592..668392	-	266	148652369	-	PsycPRwf_0557	-	methionine aminopeptidase, type I
553	 44.44	0	668986..669840	+	284	148652370	rpsB	PsycPRwf_0558	-	30S ribosomal protein S2
554	 45.16	0	670033..670911	+	292	148652371	tsf	PsycPRwf_0559	-	elongation factor Ts
555	 43.05	0	671087..671971	+	294	148652372	-	PsycPRwf_0560	-	hypothetical protein
556	 46.80	0	672122..674920	-	932	148652373	-	PsycPRwf_0561	-	phosphoenolpyruvate carboxylase
557	 43.46	0	675007..675312	-	101	148652374	-	PsycPRwf_0562	-	putative mono-oxygenase ydhR
558	 45.90	0	675528..676490	+	320	148652375	-	PsycPRwf_0563	-	hypothetical protein
559	 47.68	0	676608..677987	-	459	148652376	-	PsycPRwf_0564	-	uracil-xanthine permease
560	 49.09	0	678276..678827	-	183	148652377	-	PsycPRwf_0565	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
561	 45.97	0	678863..680500	-	545	148652378	-	PsycPRwf_0566	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
562	 42.06	-1	681129..681758	+	209	148652379	-	PsycPRwf_0567	-	BLUF domain-containing protein
563	 46.80	0	681872..683386	-	504	148652380	-	PsycPRwf_0568	-	FAD linked oxidase domain-containing protein
564	 45.48	0	683754..684980	+	408	148652381	-	PsycPRwf_0569	-	D-3-phosphoglycerate dehydrogenase
565	 46.28	0	685307..686194	+	295	148652382	-	PsycPRwf_0570	-	beta-lactamase domain-containing protein
566	 45.36	0	686506..686871	+	121	148652383	-	PsycPRwf_0571	-	hypothetical protein
567	 49.63	+1	687016..688095	-	359	148652384	-	PsycPRwf_0572	-	cation diffusion facilitator family transporter
568	 49.89	+1	688226..690550	-	774	148652385	-	PsycPRwf_0573	-	primosomal protein N'
569	 47.47	0	690651..691046	-	131	148652386	-	PsycPRwf_0574	-	putative endoribonuclease L-PSP
570	 46.70	0	691102..693285	-	727	148652387	-	PsycPRwf_0575	-	metal dependent phosphohydrolase
571	 49.04	0	693851..694111	-	86	148652388	-	PsycPRwf_0576	-	DNA-directed RNA polymerase, omega subunit
572	 47.97	0	694250..694864	-	204	148652389	-	PsycPRwf_0577	-	guanylate kinase
573	 48.28	0	695083..696039	+	318	148652390	-	PsycPRwf_0578	-	hydroxymethylbutenyl pyrophosphate reductase
574	 53.38	+2	696071..696883	+	270	148652391	-	PsycPRwf_0579	-	hypothetical protein
575	 45.46	0	697117..699078	+	653	148652392	-	PsycPRwf_0580	-	heat shock protein 90
576	 45.42	0	699279..700502	+	407	148652393	-	PsycPRwf_0581	-	nicotinate phosphoribosyltransferase
577	 46.88	0	700730..702493	+	587	148652394	-	PsycPRwf_0582	-	acyl-CoA synthetase
578	 46.32	0	702758..703612	+	284	148652395	-	PsycPRwf_0583	-	S-formylglutathione hydrolase
579	 47.82	0	703692..704402	+	236	148652396	-	PsycPRwf_0584	-	ribulose-phosphate 3-epimerase
580	 46.31	0	704472..704810	+	112	148652397	-	PsycPRwf_0585	-	hypothetical protein
581	 43.27	0	704855..705166	+	103	148652398	-	PsycPRwf_0586	-	hypothetical protein
582	 43.12	0	705355..705681	+	108	148652399	-	PsycPRwf_0587	-	hypothetical protein
583	 36.54	-2	705805..705960	-	51	148652400	rpmG	PsycPRwf_0588	-	50S ribosomal protein L33
584	 42.62	0	706027..706263	-	78	148652401	rpmB	PsycPRwf_0589	-	50S ribosomal protein L28
585	 49.43	+1	706888..708285	+	465	148652402	-	PsycPRwf_0590	-	major facilitator transporter
586	 44.44	0	708398..709189	-	263	148652403	-	PsycPRwf_0591	-	cytochrome c assembly protein
587	 48.58	0	709652..711199	+	515	148652404	-	PsycPRwf_0592	-	signal recognition particle protein
588	 42.79	0	711315..712688	-	457	148652405	-	PsycPRwf_0593	-	major facilitator transporter
589	 47.84	0	712997..713251	-	84	148652406	-	PsycPRwf_0594	-	Na+-dependent transporter-like protein
590	 48.57	0	713707..717525	-	1272	148652407	metH	PsycPRwf_0595	-	B12-dependent methionine synthase
591	 45.47	0	717848..718498	+	216	148652408	-	PsycPRwf_0596	-	beta-Ig-H3/fasciclin
592	 42.44	-1	718572..720119	-	515	148652409	-	PsycPRwf_0597	-	amino acid carrier protein
593	 45.26	0	720680..721291	+	203	148652410	-	PsycPRwf_0598	-	LemA family protein
594	 50.46	+1	721534..722724	+	396	148652411	-	PsycPRwf_0599	-	hypothetical protein
595	 47.74	0	722882..723457	+	191	148652412	-	PsycPRwf_0600	-	hypothetical protein
596	 45.73	0	723588..724337	-	249	148652413	-	PsycPRwf_0601	-	silent information regulator protein Sir2
597	 43.19	0	724399..724824	+	141	148652414	-	PsycPRwf_0602	-	hypothetical protein
598	 41.76	-1	724858..725961	-	367	148652415	-	PsycPRwf_0603	-	IS605 family transposase OrfB
599	 44.41	0	726229..727203	+	324	148652416	-	PsycPRwf_0604	-	hypothetical protein
600	 49.92	+1	727833..728483	+	216	148652417	-	PsycPRwf_0605	-	cytochrome c, class I
601	 44.93	0	728854..729819	+	321	148652418	-	PsycPRwf_0606	-	ABC transporter related
602	 43.01	0	729816..730631	+	271	148652419	-	PsycPRwf_0607	-	ABC-2 type transporter
603	 47.40	0	730774..731676	+	300	148652420	queF	PsycPRwf_0608	-	7-cyano-7-deazaguanine reductase
604	 47.83	0	732673..734472	+	599	148652421	-	PsycPRwf_0609	-	acetolactate synthase 3 catalytic subunit
605	 45.05	0	734472..734966	+	164	148652422	-	PsycPRwf_0610	-	acetolactate synthase 3 regulatory subunit
606	 45.03	0	735076..736092	+	338	148652423	-	PsycPRwf_0611	-	ketol-acid reductoisomerase
607	 42.75	0	736283..736696	+	137	148652424	-	PsycPRwf_0612	-	hypothetical protein
608	 43.52	0	737109..737324	+	71	148652425	-	PsycPRwf_0613	-	cold-shock DNA-binding domain-containing protein
609	 42.93	0	737833..738582	+	249	148652426	-	PsycPRwf_0614	-	electron transfer flavoprotein, alpha/beta-subunit-like protein
610	 45.87	0	738765..739697	+	310	148652427	-	PsycPRwf_0615	-	electron transfer flavoprotein, alpha subunit-like protein
611	 48.37	0	739917..740468	+	183	148652428	-	PsycPRwf_0616	-	GCN5-related N-acetyltransferase
612	 48.46	0	740573..741418	-	281	148652429	-	PsycPRwf_0617	-	arginyl-tRNA-protein transferase
613	 49.01	0	741437..742246	-	269	148652430	aat	PsycPRwf_0618	-	leucyl/phenylalanyl-tRNA--protein transferase
614	 48.30	0	742552..743580	-	342	148652431	-	PsycPRwf_0619	-	thioredoxin reductase
615	 48.31	0	743957..747127	+	1056	148652432	-	PsycPRwf_0620	-	cell divisionFtsK/SpoIIIE
616	 44.35	0	747329..748036	+	235	148652433	-	PsycPRwf_0621	-	pirin domain-containing protein
617	 49.90	+1	748211..749701	+	496	148652434	-	PsycPRwf_0622	-	amidase
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.