IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
430	 38.89	-2	527606..527893	+	95	148652247	-	PsycPRwf_0435	-	ribosomal protein S17
431	 43.36	0	528042..528410	+	122	148652248	rplN	PsycPRwf_0436	-	50S ribosomal protein L14
432	 39.94	-1	528420..528737	+	105	148652249	rplX	PsycPRwf_0437	-	50S ribosomal protein L24
433	 43.58	0	528759..529295	+	178	148652250	rplE	PsycPRwf_0438	-	50S ribosomal protein L5
434	 43.46	0	529308..529613	+	101	148652251	rpsN	PsycPRwf_0439	-	30S ribosomal protein S14
435	 45.11	0	529626..530024	+	132	148652252	rpsH	PsycPRwf_0440	-	30S ribosomal protein S8
436	 41.39	-1	530219..530752	+	177	148652253	rplF	PsycPRwf_0441	-	50S ribosomal protein L6
437	 47.01	0	530764..531114	+	116	148652254	rplR	PsycPRwf_0442	-	50S ribosomal protein L18
438	 43.17	0	531117..531614	+	165	148652255	rpsE	PsycPRwf_0443	-	30S ribosomal protein S5
439	 43.33	0	531648..531827	+	59	148652256	rpmD	PsycPRwf_0444	-	50S ribosomal protein L30
440	 44.66	0	531827..532285	+	152	148652257	rplO	PsycPRwf_0445	-	50S ribosomal protein L15
441	 42.79	0	532291..533622	+	443	148652258	secY	PsycPRwf_0446	-	preprotein translocase subunit SecY
442	 43.98	0	534035..534391	+	118	148652259	rpsM	PsycPRwf_0447	-	30S ribosomal protein S13
443	 47.33	0	534412..534804	+	130	148652260	-	PsycPRwf_0448	-	30S ribosomal protein S11
444	 41.90	-1	534917..535558	+	213	148652261	rpsD	PsycPRwf_0449	-	30S ribosomal protein S4
445	 43.45	0	535598..536605	+	335	148652262	-	PsycPRwf_0450	-	DNA-directed RNA polymerase subunit alpha
446	 45.83	0	536626..536985	+	119	148652263	rplQ	PsycPRwf_0451	-	50S ribosomal protein L17
447	 45.09	0	537265..537885	-	206	148652264	-	PsycPRwf_0452	-	Sua5/YciO/YrdC/YwlC family protein
448	 45.54	0	538057..538728	-	223	148652265	-	PsycPRwf_0453	-	hypothetical protein
449	 43.52	0	538809..539456	+	215	148652266	-	PsycPRwf_0454	-	hypothetical protein
450	 45.36	0	539725..539907	+	60	148652267	rpmF	PsycPRwf_0455	-	50S ribosomal protein L32
451	 45.65	0	540030..541028	+	332	148652268	-	PsycPRwf_0456	-	malonyl CoA-acyl carrier protein transacylase
452	 47.33	0	541028..541756	+	242	148652269	-	PsycPRwf_0457	-	3-oxoacyl-(acyl-carrier-protein) reductase
453	 34.57	-2	541984..542226	+	80	148652270	-	PsycPRwf_0458	-	acyl carrier protein
454	 39.25	-1	542595..543101	+	168	148652271	-	PsycPRwf_0459	-	hypothetical protein
455	 49.54	+1	543328..544524	-	398	148652272	-	PsycPRwf_0460	-	hypothetical protein
456	 50.36	+1	544618..546297	+	559	148652273	-	PsycPRwf_0461	-	carbohydrate kinase, YjeF related protein
457	 48.13	0	546373..546960	-	195	148652274	-	PsycPRwf_0462	-	hypothetical protein
458	 48.23	0	547066..547629	-	187	148652275	-	PsycPRwf_0463	-	NUDIX hydrolase
459	 51.02	+1	547859..548842	+	327	148652276	-	PsycPRwf_0464	-	NUDIX hydrolase
460	 48.64	0	548880..549944	-	354	148652277	-	PsycPRwf_0465	-	biotin/lipoate A/B protein ligase
461	 51.17	+1	550210..551022	+	270	148652278	-	PsycPRwf_0466	-	hypothetical protein
462	 48.76	0	551141..554983	+	1280	148652279	-	PsycPRwf_0467	-	SMC domain-containing protein
463	 45.91	0	555167..556192	+	341	148652280	-	PsycPRwf_0468	-	ZipA, C-terminal FtsZ-binding region
464	 48.24	0	556346..557224	-	292	148652281	-	PsycPRwf_0469	-	short chain dehydrogenase
465	 49.66	+1	557291..558025	-	244	148652282	-	PsycPRwf_0470	-	phosphoglycerate mutase
466	 49.75	+1	558086..559297	-	403	148652283	-	PsycPRwf_0471	-	aminoglycoside phosphotransferase
467	 50.96	+1	559448..560695	-	415	148652284	-	PsycPRwf_0472	-	acyl-CoA dehydrogenase domain-containing protein
468	 49.64	+1	561020..563080	+	686	148652285	-	PsycPRwf_0473	-	DNA ligase, NAD-dependent
469	 45.34	0	563289..564554	+	421	148652286	-	PsycPRwf_0474	-	FAD dependent oxidoreductase
470	 45.13	0	564725..565063	+	112	148652287	-	PsycPRwf_0475	-	endoribonuclease L-PSP
471	 48.33	0	565220..565879	-	219	148652288	-	PsycPRwf_0476	-	hypothetical protein
472	 46.68	0	565988..567703	-	571	148652289	-	PsycPRwf_0477	-	von Willebrand factor, type A
473	 46.30	0	568093..569010	+	305	148652290	-	PsycPRwf_0478	-	hypothetical protein
474	 51.18	+1	569147..573253	-	1368	148652291	-	PsycPRwf_0479	-	ribonuclease
475	 45.94	0	574538..575632	+	364	148652292	-	PsycPRwf_0480	-	RluA family pseudouridine synthase
476	 49.14	0	575660..576355	+	231	148652293	-	PsycPRwf_0481	-	HAD family hydrolase
477	 47.89	0	576465..577412	+	315	148652294	ubiA	PsycPRwf_0482	-	prenyltransferase
478	 47.42	0	577437..578075	+	212	148652295	-	PsycPRwf_0483	-	hypothetical protein
479	 48.89	0	578070..578744	-	224	148652296	-	PsycPRwf_0484	-	hypothetical protein
480	 48.36	0	579260..579685	-	141	148652297	-	PsycPRwf_0485	-	hypothetical protein
481	 43.92	0	579917..580492	-	191	148652298	-	PsycPRwf_0486	-	translation elongation factor P
482	 45.84	0	580550..581668	+	372	148652299	-	PsycPRwf_0487	-	lysine 2,3-aminomutase YodO family protein
483	 49.80	+1	581680..582189	+	169	148652300	-	PsycPRwf_0488	-	cytochrome c, class I
484	 49.23	0	582291..582875	-	194	148652301	-	PsycPRwf_0489	-	peptidase M23B
485	 47.72	0	583024..585873	-	949	148652302	fadE	PsycPRwf_0490	-	acyl-CoA dehydrogenase
486	 47.58	0	586233..586913	-	226	148652303	-	PsycPRwf_0491	-	DNA repair protein RadC
487	 46.68	0	587286..588536	+	416	148652304	-	PsycPRwf_0492	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
488	 45.68	0	588651..589460	+	269	148652305	-	PsycPRwf_0493	-	nitroreductase
489	 47.58	0	589519..590283	+	254	148652306	-	PsycPRwf_0494	-	hypothetical protein
490	 50.57	+1	590399..591094	+	231	148652307	-	PsycPRwf_0495	-	HhH-GPD family protein
491	 48.28	0	591124..592053	-	309	148652308	-	PsycPRwf_0496	-	uroporphyrin-III C/tetrapyrrole methyltransferase
492	 51.05	+1	592160..592588	+	142	148652309	-	PsycPRwf_0497	-	hypothetical protein
493	 47.54	0	592781..593653	+	290	148652310	-	PsycPRwf_0498	-	transport-associated
494	 47.97	0	593785..594645	+	286	148652311	-	PsycPRwf_0499	-	esterase/lipase-like protein
495	 45.49	0	594992..595246	+	84	148652312	-	PsycPRwf_0500	-	BolA family protein
496	 50.65	+1	595457..596755	+	432	148652313	-	PsycPRwf_0501	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
497	 47.02	0	596809..597480	+	223	148652314	hisG	PsycPRwf_0502	-	ATP phosphoribosyltransferase catalytic subunit
498	 50.73	+1	597669..598961	+	430	148652315	hisD	PsycPRwf_0503	-	histidinol dehydrogenase
499	 45.20	0	599288..600391	+	367	148652316	-	PsycPRwf_0504	-	histidinol-phosphate aminotransferase
500	 48.24	0	600538..602241	-	567	148652317	-	PsycPRwf_0505	-	anthranilate synthase component I/chorismate-binding protein
501	 44.67	0	602708..604012	+	434	148652318	-	PsycPRwf_0506	-	hypothetical protein
502	 43.37	0	604291..604569	+	92	148652319	rpmE2	PsycPRwf_0507	-	50S ribosomal protein L31 type B
503	 49.44	+1	604746..606080	-	444	148652320	-	PsycPRwf_0508	-	secretion protein HlyD family protein
504	 45.47	0	606171..607793	-	540	148652321	-	PsycPRwf_0509	-	hypothetical protein
505	 46.36	0	608053..609603	-	516	148652322	-	PsycPRwf_0510	-	integral membrane protein MviN
506	 47.96	0	609840..610721	+	293	148652323	-	PsycPRwf_0511	-	HpcH/HpaI aldolase
507	 44.93	0	610754..611374	-	206	148652324	-	PsycPRwf_0512	-	N-acetyl-anhydromuranmyl-L-alanine amidase
508	 47.09	0	611553..613565	+	670	148652325	-	PsycPRwf_0513	-	hypothetical protein
509	 49.12	0	613594..615018	+	474	148652326	-	PsycPRwf_0514	-	PGAP1 family protein
510	 35.99	-2	615042..615869	-	275	148652327	-	PsycPRwf_0515	-	hypothetical protein
511	 44.16	0	615879..618797	-	972	148652328	-	PsycPRwf_0516	-	hypothetical protein
512	 42.83	0	618962..619561	-	199	148652329	-	PsycPRwf_0517	-	hypothetical protein
513	 41.23	-1	619708..620391	-	227	148652330	-	PsycPRwf_0518	-	hypothetical protein
514	 46.69	0	620808..621698	+	296	148652331	-	PsycPRwf_0519	-	NAD-dependent epimerase/dehydratase
515	 45.63	0	621771..623153	+	460	148652332	-	PsycPRwf_0520	-	hypothetical protein
516	 44.74	0	623311..623985	+	224	148652333	pyrE	PsycPRwf_0521	-	orotate phosphoribosyltransferase
517	 45.50	0	624098..625075	+	325	148652334	-	PsycPRwf_0522	-	glutathione synthetase
518	 42.12	-1	625255..625698	+	147	148652335	-	PsycPRwf_0523	-	hypothetical protein
519	 50.86	+1	626072..627229	+	385	148652336	-	PsycPRwf_0524	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
520	 47.38	0	627401..628831	+	476	148652337	-	PsycPRwf_0525	-	UDP-N-acetylmuramate--alanine ligase
521	 47.15	0	628973..629971	+	332	148652338	-	PsycPRwf_0526	-	D-alanine--D-alanine ligase
522	 41.19	-1	630195..631136	+	313	148652339	-	PsycPRwf_0527	-	cell division protein FtsQ
523	 41.80	-1	631489..632787	+	432	148652340	-	PsycPRwf_0528	-	cell division protein FtsA
524	 45.31	0	632868..634061	+	397	148652341	-	PsycPRwf_0529	-	cell division protein FtsZ
525	 41.39	-1	634258..635151	+	297	148652342	lpxC	PsycPRwf_0530	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
526	 38.70	-2	635447..635986	-	179	148652343	-	PsycPRwf_0531	-	hypothetical protein
527	 44.49	0	636176..636901	+	241	148652344	-	PsycPRwf_0532	-	hypothetical protein
528	 47.32	0	637134..637469	-	111	148652345	-	PsycPRwf_0533	-	hypothetical protein
529	 48.34	0	637759..638391	+	210	148652346	-	PsycPRwf_0534	-	ribosomal RNA methyltransferase RrmJ/FtsJ
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.