IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
383	 45.41	0	469186..470013	+	275	148652200	-	PsycPRwf_0388	-	enoyl-CoA hydratase
384	 45.60	0	470331..471545	+	404	148652201	-	PsycPRwf_0389	-	Bcr/CflA subfamily drug resistance transporter
385	 51.42	+1	471724..472215	-	163	148652202	-	PsycPRwf_0390	-	hypothetical protein
386	 46.16	0	472691..473485	+	264	148652203	-	PsycPRwf_0391	-	cobyrinic acid a,c-diamide synthase
387	 48.76	0	473546..474109	+	187	148652204	-	PsycPRwf_0392	-	hypothetical protein
388	 48.02	0	474310..476964	+	884	148652205	-	PsycPRwf_0393	-	DNA topoisomerase I
389	 45.27	0	477065..478078	-	337	148652206	-	PsycPRwf_0394	-	hypothetical protein
390	 47.57	0	478378..481200	-	940	148652207	-	PsycPRwf_0395	-	1A family penicillin-binding protein
391	 47.45	0	481937..482935	+	332	148652208	-	PsycPRwf_0396	-	Tfp pilus assembly protein ATPase PilM-like protein
392	 47.76	0	483001..483513	+	170	148652209	-	PsycPRwf_0397	-	fimbrial assembly family protein
393	 48.01	0	483523..484932	+	469	148652210	-	PsycPRwf_0398	-	Tfp pilus assembly protein PilO-like protein
394	 46.14	0	485000..486928	+	642	148652211	-	PsycPRwf_0399	-	type IV pilus secretin PilQ
395	 47.33	0	487190..487732	+	180	148652212	-	PsycPRwf_0400	-	shikimate kinase
396	 49.59	+1	487825..488925	+	366	148652213	-	PsycPRwf_0401	-	3-dehydroquinate synthase
397	 45.05	0	489039..490088	+	349	148652214	-	PsycPRwf_0402	-	hypothetical protein
398	 49.36	+1	490907..495430	+	1507	148652215	gltB	PsycPRwf_0403	-	glutamate synthase subunit alpha
399	 48.63	0	495647..497065	+	472	148652216	gltD	PsycPRwf_0404	-	glutamate synthase subunit beta
400	 46.30	0	497448..498095	+	215	148652217	-	PsycPRwf_0405	-	carbonic anhydrase
401	 43.59	0	498216..498761	+	181	148652218	-	PsycPRwf_0406	-	lactoylglutathione lyase
402	 48.10	0	498975..499922	+	315	148652219	-	PsycPRwf_0407	-	MscS mechanosensitive ion channel
403	 46.98	0	500026..500472	-	148	148652220	-	PsycPRwf_0408	-	cytochrome c, class II
404	 49.45	+1	500692..501690	-	332	148652221	-	PsycPRwf_0409	-	coproporphyrinogen III oxidase
405	 45.85	0	501751..502437	-	228	148652222	-	PsycPRwf_0410	-	GTP cyclohydrolase II
406	 48.90	0	503074..505206	+	710	148652223	-	PsycPRwf_0411	-	1-deoxy-D-xylulose-5-phosphate synthase
407	 47.77	0	505361..506191	+	276	148652224	-	PsycPRwf_0412	-	inositol-phosphate phosphatase
408	 44.09	0	506319..506969	+	216	148652225	-	PsycPRwf_0413	-	hypothetical protein
409	 46.44	0	507055..507939	-	294	148652226	-	PsycPRwf_0414	-	formyltetrahydrofolate deformylase
410	 39.84	-1	508355..510613	+	752	148652227	-	PsycPRwf_0415	-	hypothetical protein
411	 34.44	-2	510661..512100	+	479	148652228	-	PsycPRwf_0416	-	hypothetical protein
412	 48.26	0	512539..514059	-	506	148652229	gatB	PsycPRwf_0417	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
413	 49.80	+1	514059..515558	-	499	148652230	-	PsycPRwf_0418	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
414	 48.38	0	515768..516106	-	112	148652231	-	PsycPRwf_0419	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
415	 48.49	0	516770..517798	+	342	148652232	-	PsycPRwf_0420	-	cell shape determining protein MreB
416	 47.56	0	517821..518741	+	306	148652233	-	PsycPRwf_0421	-	rod shape-determining protein MreC
417	 44.79	0	518955..519443	+	162	148652234	-	PsycPRwf_0422	-	hypothetical protein
418	 50.61	+1	519525..520184	+	219	148652235	-	PsycPRwf_0423	-	maf protein
419	 47.99	0	520354..522195	+	613	148652236	-	PsycPRwf_0424	-	ribonuclease
420	 48.08	0	522771..523082	+	103	148652237	rpsJ	PsycPRwf_0425	-	30S ribosomal protein S10
421	 47.57	0	523177..523815	+	212	148652238	rplC	PsycPRwf_0426	-	50S ribosomal protein L3
422	 46.27	0	523830..524432	+	200	148652239	rplD	PsycPRwf_0427	-	50S ribosomal protein L4
423	 39.60	-1	524429..524779	+	116	148652240	rplW	PsycPRwf_0428	-	50S ribosomal protein L23
424	 45.49	0	524791..525621	+	276	148652241	rplB	PsycPRwf_0429	-	50S ribosomal protein L2
425	 42.75	0	525633..525908	+	91	148652242	rpsS	PsycPRwf_0430	-	30S ribosomal protein S19
426	 43.94	0	525919..526248	+	109	148652243	rplV	PsycPRwf_0431	-	50S ribosomal protein L22
427	 43.82	0	526252..526995	+	247	148652244	rpsC	PsycPRwf_0432	-	30S ribosomal protein S3
428	 44.20	0	526999..527412	+	137	148652245	rplP	PsycPRwf_0433	-	50S ribosomal protein L16
429	 45.13	0	527412..527606	+	64	148652246	-	PsycPRwf_0434	-	50S ribosomal protein L29
430	 38.89	-2	527606..527893	+	95	148652247	-	PsycPRwf_0435	-	ribosomal protein S17
431	 43.36	0	528042..528410	+	122	148652248	rplN	PsycPRwf_0436	-	50S ribosomal protein L14
432	 39.94	-1	528420..528737	+	105	148652249	rplX	PsycPRwf_0437	-	50S ribosomal protein L24
433	 43.58	0	528759..529295	+	178	148652250	rplE	PsycPRwf_0438	-	50S ribosomal protein L5
434	 43.46	0	529308..529613	+	101	148652251	rpsN	PsycPRwf_0439	-	30S ribosomal protein S14
435	 45.11	0	529626..530024	+	132	148652252	rpsH	PsycPRwf_0440	-	30S ribosomal protein S8
436	 41.39	-1	530219..530752	+	177	148652253	rplF	PsycPRwf_0441	-	50S ribosomal protein L6
437	 47.01	0	530764..531114	+	116	148652254	rplR	PsycPRwf_0442	-	50S ribosomal protein L18
438	 43.17	0	531117..531614	+	165	148652255	rpsE	PsycPRwf_0443	-	30S ribosomal protein S5
439	 43.33	0	531648..531827	+	59	148652256	rpmD	PsycPRwf_0444	-	50S ribosomal protein L30
440	 44.66	0	531827..532285	+	152	148652257	rplO	PsycPRwf_0445	-	50S ribosomal protein L15
441	 42.79	0	532291..533622	+	443	148652258	secY	PsycPRwf_0446	-	preprotein translocase subunit SecY
442	 43.98	0	534035..534391	+	118	148652259	rpsM	PsycPRwf_0447	-	30S ribosomal protein S13
443	 47.33	0	534412..534804	+	130	148652260	-	PsycPRwf_0448	-	30S ribosomal protein S11
444	 41.90	-1	534917..535558	+	213	148652261	rpsD	PsycPRwf_0449	-	30S ribosomal protein S4
445	 43.45	0	535598..536605	+	335	148652262	-	PsycPRwf_0450	-	DNA-directed RNA polymerase subunit alpha
446	 45.83	0	536626..536985	+	119	148652263	rplQ	PsycPRwf_0451	-	50S ribosomal protein L17
447	 45.09	0	537265..537885	-	206	148652264	-	PsycPRwf_0452	-	Sua5/YciO/YrdC/YwlC family protein
448	 45.54	0	538057..538728	-	223	148652265	-	PsycPRwf_0453	-	hypothetical protein
449	 43.52	0	538809..539456	+	215	148652266	-	PsycPRwf_0454	-	hypothetical protein
450	 45.36	0	539725..539907	+	60	148652267	rpmF	PsycPRwf_0455	-	50S ribosomal protein L32
451	 45.65	0	540030..541028	+	332	148652268	-	PsycPRwf_0456	-	malonyl CoA-acyl carrier protein transacylase
452	 47.33	0	541028..541756	+	242	148652269	-	PsycPRwf_0457	-	3-oxoacyl-(acyl-carrier-protein) reductase
453	 34.57	-2	541984..542226	+	80	148652270	-	PsycPRwf_0458	-	acyl carrier protein
454	 39.25	-1	542595..543101	+	168	148652271	-	PsycPRwf_0459	-	hypothetical protein
455	 49.54	+1	543328..544524	-	398	148652272	-	PsycPRwf_0460	-	hypothetical protein
456	 50.36	+1	544618..546297	+	559	148652273	-	PsycPRwf_0461	-	carbohydrate kinase, YjeF related protein
457	 48.13	0	546373..546960	-	195	148652274	-	PsycPRwf_0462	-	hypothetical protein
458	 48.23	0	547066..547629	-	187	148652275	-	PsycPRwf_0463	-	NUDIX hydrolase
459	 51.02	+1	547859..548842	+	327	148652276	-	PsycPRwf_0464	-	NUDIX hydrolase
460	 48.64	0	548880..549944	-	354	148652277	-	PsycPRwf_0465	-	biotin/lipoate A/B protein ligase
461	 51.17	+1	550210..551022	+	270	148652278	-	PsycPRwf_0466	-	hypothetical protein
462	 48.76	0	551141..554983	+	1280	148652279	-	PsycPRwf_0467	-	SMC domain-containing protein
463	 45.91	0	555167..556192	+	341	148652280	-	PsycPRwf_0468	-	ZipA, C-terminal FtsZ-binding region
464	 48.24	0	556346..557224	-	292	148652281	-	PsycPRwf_0469	-	short chain dehydrogenase
465	 49.66	+1	557291..558025	-	244	148652282	-	PsycPRwf_0470	-	phosphoglycerate mutase
466	 49.75	+1	558086..559297	-	403	148652283	-	PsycPRwf_0471	-	aminoglycoside phosphotransferase
467	 50.96	+1	559448..560695	-	415	148652284	-	PsycPRwf_0472	-	acyl-CoA dehydrogenase domain-containing protein
468	 49.64	+1	561020..563080	+	686	148652285	-	PsycPRwf_0473	-	DNA ligase, NAD-dependent
469	 45.34	0	563289..564554	+	421	148652286	-	PsycPRwf_0474	-	FAD dependent oxidoreductase
470	 45.13	0	564725..565063	+	112	148652287	-	PsycPRwf_0475	-	endoribonuclease L-PSP
471	 48.33	0	565220..565879	-	219	148652288	-	PsycPRwf_0476	-	hypothetical protein
472	 46.68	0	565988..567703	-	571	148652289	-	PsycPRwf_0477	-	von Willebrand factor, type A
473	 46.30	0	568093..569010	+	305	148652290	-	PsycPRwf_0478	-	hypothetical protein
474	 51.18	+1	569147..573253	-	1368	148652291	-	PsycPRwf_0479	-	ribonuclease
475	 45.94	0	574538..575632	+	364	148652292	-	PsycPRwf_0480	-	RluA family pseudouridine synthase
476	 49.14	0	575660..576355	+	231	148652293	-	PsycPRwf_0481	-	HAD family hydrolase
477	 47.89	0	576465..577412	+	315	148652294	ubiA	PsycPRwf_0482	-	prenyltransferase
478	 47.42	0	577437..578075	+	212	148652295	-	PsycPRwf_0483	-	hypothetical protein
479	 48.89	0	578070..578744	-	224	148652296	-	PsycPRwf_0484	-	hypothetical protein
480	 48.36	0	579260..579685	-	141	148652297	-	PsycPRwf_0485	-	hypothetical protein
481	 43.92	0	579917..580492	-	191	148652298	-	PsycPRwf_0486	-	translation elongation factor P
482	 45.84	0	580550..581668	+	372	148652299	-	PsycPRwf_0487	-	lysine 2,3-aminomutase YodO family protein
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.