IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
347	 46.28	0	424961..426706	+	581	148652164	-	PsycPRwf_0352	-	RNA polymerase, sigma 54 subunit, RpoN
348	 42.61	0	427202..427600	+	132	148652165	-	PsycPRwf_0353	-	sigma 54 modulation protein/ribosomal protein S30EA
349	 44.28	0	427837..428037	-	66	148652166	-	PsycPRwf_0354	-	thiamine biosynthesis protein ThiS
350	 48.91	0	428088..428453	-	121	148652167	-	PsycPRwf_0355	-	hypothetical protein
351	 48.08	0	428621..429739	-	372	148652168	-	PsycPRwf_0356	-	RNA polymerase factor sigma-32
352	 46.93	0	429796..430170	-	124	148652169	-	PsycPRwf_0357	-	SirA family protein
353	 48.88	0	430615..432216	+	533	148652170	-	PsycPRwf_0358	-	peptidase M48, Ste24p
354	 42.67	0	432252..432701	-	149	148652171	-	PsycPRwf_0359	-	GatB/Yqey domain-containing protein
355	 44.44	0	432986..433201	-	71	148652172	rpsU	PsycPRwf_0360	-	30S ribosomal protein S21
356	 53.29	+2	433867..434292	+	141	148652173	-	PsycPRwf_0361	-	hypothetical protein
357	 50.17	+1	434455..435042	+	195	148652174	-	PsycPRwf_0362	-	cytochrome c5-like protein
358	 48.56	0	435335..436378	+	347	148652175	-	PsycPRwf_0363	-	metalloendopeptidase glycoprotease family
359	 50.54	+1	436392..436763	+	123	148652176	-	PsycPRwf_0364	-	CrcB protein
360	 49.48	+1	436782..437741	-	319	148652177	-	PsycPRwf_0365	-	LysR family transcriptional regulator
361	 44.32	0	438256..439629	+	457	148652178	-	PsycPRwf_0366	-	sodium:dicarboxylate symporter
362	 41.64	-1	439840..440946	+	368	148652179	-	PsycPRwf_0367	-	IS605 family transposase OrfB
363	 49.41	+1	440960..441724	-	254	148652180	-	PsycPRwf_0368	-	hypothetical protein
364	 46.67	0	442104..443303	+	399	148652181	-	PsycPRwf_0369	-	Na+/H+ antiporter NhaA
365	 48.72	0	443472..444017	+	181	148652182	-	PsycPRwf_0370	-	hypothetical protein
366	 43.59	0	444315..444704	+	129	148652183	-	PsycPRwf_0371	-	hypothetical protein
367	 46.20	0	445772..447574	+	600	148652184	-	PsycPRwf_0372	-	GTP-binding protein LepA
368	 45.46	0	447733..448878	+	381	148652185	-	PsycPRwf_0373	-	signal peptidase I
369	 46.92	0	449067..449846	+	259	148652186	-	PsycPRwf_0374	-	ribonuclease III
370	 44.80	0	449984..451003	+	339	148652187	era	PsycPRwf_0375	-	GTP-binding protein Era
371	 45.20	0	451091..451798	+	235	148652188	-	PsycPRwf_0376	-	DNA repair protein RecO
372	 46.61	0	451899..452666	+	255	148652189	-	PsycPRwf_0377	-	pyridoxal phosphate biosynthetic protein PdxJ
373	 38.69	-2	452719..453372	-	217	148652190	-	PsycPRwf_0378	-	hypothetical protein
374	 45.46	0	453804..455015	+	403	148652191	-	PsycPRwf_0379	-	OmpA/MotB domain-containing protein
375	 42.69	0	455216..457063	+	615	148652192	-	PsycPRwf_0380	-	GTP-binding protein TypA
376	 41.44	-1	457404..457835	+	143	148652193	-	PsycPRwf_0381	-	large conductance mechanosensitive channel protein
377	 44.48	0	457938..458861	-	307	148652194	-	PsycPRwf_0382	-	formamidopyrimidine-DNA glycosylase
378	 46.33	0	458864..461557	-	897	148652195	-	PsycPRwf_0383	-	(p)ppGpp synthetase I, SpoT/RelA
379	 48.55	0	461801..463351	-	516	148652196	rumA	PsycPRwf_0384	-	23S rRNA 5-methyluridine methyltransferase
380	 45.19	0	463603..464412	-	269	148652197	-	PsycPRwf_0385	-	hypothetical protein
381	 48.63	0	464533..465480	-	315	148652198	cysM	PsycPRwf_0386	-	cysteine synthase B
382	 47.64	0	465660..469133	+	1157	148652199	-	PsycPRwf_0387	-	multi-sensor hybrid histidine kinase
383	 45.41	0	469186..470013	+	275	148652200	-	PsycPRwf_0388	-	enoyl-CoA hydratase
384	 45.60	0	470331..471545	+	404	148652201	-	PsycPRwf_0389	-	Bcr/CflA subfamily drug resistance transporter
385	 51.42	+1	471724..472215	-	163	148652202	-	PsycPRwf_0390	-	hypothetical protein
386	 46.16	0	472691..473485	+	264	148652203	-	PsycPRwf_0391	-	cobyrinic acid a,c-diamide synthase
387	 48.76	0	473546..474109	+	187	148652204	-	PsycPRwf_0392	-	hypothetical protein
388	 48.02	0	474310..476964	+	884	148652205	-	PsycPRwf_0393	-	DNA topoisomerase I
389	 45.27	0	477065..478078	-	337	148652206	-	PsycPRwf_0394	-	hypothetical protein
390	 47.57	0	478378..481200	-	940	148652207	-	PsycPRwf_0395	-	1A family penicillin-binding protein
391	 47.45	0	481937..482935	+	332	148652208	-	PsycPRwf_0396	-	Tfp pilus assembly protein ATPase PilM-like protein
392	 47.76	0	483001..483513	+	170	148652209	-	PsycPRwf_0397	-	fimbrial assembly family protein
393	 48.01	0	483523..484932	+	469	148652210	-	PsycPRwf_0398	-	Tfp pilus assembly protein PilO-like protein
394	 46.14	0	485000..486928	+	642	148652211	-	PsycPRwf_0399	-	type IV pilus secretin PilQ
395	 47.33	0	487190..487732	+	180	148652212	-	PsycPRwf_0400	-	shikimate kinase
396	 49.59	+1	487825..488925	+	366	148652213	-	PsycPRwf_0401	-	3-dehydroquinate synthase
397	 45.05	0	489039..490088	+	349	148652214	-	PsycPRwf_0402	-	hypothetical protein
398	 49.36	+1	490907..495430	+	1507	148652215	gltB	PsycPRwf_0403	-	glutamate synthase subunit alpha
399	 48.63	0	495647..497065	+	472	148652216	gltD	PsycPRwf_0404	-	glutamate synthase subunit beta
400	 46.30	0	497448..498095	+	215	148652217	-	PsycPRwf_0405	-	carbonic anhydrase
401	 43.59	0	498216..498761	+	181	148652218	-	PsycPRwf_0406	-	lactoylglutathione lyase
402	 48.10	0	498975..499922	+	315	148652219	-	PsycPRwf_0407	-	MscS mechanosensitive ion channel
403	 46.98	0	500026..500472	-	148	148652220	-	PsycPRwf_0408	-	cytochrome c, class II
404	 49.45	+1	500692..501690	-	332	148652221	-	PsycPRwf_0409	-	coproporphyrinogen III oxidase
405	 45.85	0	501751..502437	-	228	148652222	-	PsycPRwf_0410	-	GTP cyclohydrolase II
406	 48.90	0	503074..505206	+	710	148652223	-	PsycPRwf_0411	-	1-deoxy-D-xylulose-5-phosphate synthase
407	 47.77	0	505361..506191	+	276	148652224	-	PsycPRwf_0412	-	inositol-phosphate phosphatase
408	 44.09	0	506319..506969	+	216	148652225	-	PsycPRwf_0413	-	hypothetical protein
409	 46.44	0	507055..507939	-	294	148652226	-	PsycPRwf_0414	-	formyltetrahydrofolate deformylase
410	 39.84	-1	508355..510613	+	752	148652227	-	PsycPRwf_0415	-	hypothetical protein
411	 34.44	-2	510661..512100	+	479	148652228	-	PsycPRwf_0416	-	hypothetical protein
412	 48.26	0	512539..514059	-	506	148652229	gatB	PsycPRwf_0417	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
413	 49.80	+1	514059..515558	-	499	148652230	-	PsycPRwf_0418	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
414	 48.38	0	515768..516106	-	112	148652231	-	PsycPRwf_0419	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
415	 48.49	0	516770..517798	+	342	148652232	-	PsycPRwf_0420	-	cell shape determining protein MreB
416	 47.56	0	517821..518741	+	306	148652233	-	PsycPRwf_0421	-	rod shape-determining protein MreC
417	 44.79	0	518955..519443	+	162	148652234	-	PsycPRwf_0422	-	hypothetical protein
418	 50.61	+1	519525..520184	+	219	148652235	-	PsycPRwf_0423	-	maf protein
419	 47.99	0	520354..522195	+	613	148652236	-	PsycPRwf_0424	-	ribonuclease
420	 48.08	0	522771..523082	+	103	148652237	rpsJ	PsycPRwf_0425	-	30S ribosomal protein S10
421	 47.57	0	523177..523815	+	212	148652238	rplC	PsycPRwf_0426	-	50S ribosomal protein L3
422	 46.27	0	523830..524432	+	200	148652239	rplD	PsycPRwf_0427	-	50S ribosomal protein L4
423	 39.60	-1	524429..524779	+	116	148652240	rplW	PsycPRwf_0428	-	50S ribosomal protein L23
424	 45.49	0	524791..525621	+	276	148652241	rplB	PsycPRwf_0429	-	50S ribosomal protein L2
425	 42.75	0	525633..525908	+	91	148652242	rpsS	PsycPRwf_0430	-	30S ribosomal protein S19
426	 43.94	0	525919..526248	+	109	148652243	rplV	PsycPRwf_0431	-	50S ribosomal protein L22
427	 43.82	0	526252..526995	+	247	148652244	rpsC	PsycPRwf_0432	-	30S ribosomal protein S3
428	 44.20	0	526999..527412	+	137	148652245	rplP	PsycPRwf_0433	-	50S ribosomal protein L16
429	 45.13	0	527412..527606	+	64	148652246	-	PsycPRwf_0434	-	50S ribosomal protein L29
430	 38.89	-2	527606..527893	+	95	148652247	-	PsycPRwf_0435	-	ribosomal protein S17
431	 43.36	0	528042..528410	+	122	148652248	rplN	PsycPRwf_0436	-	50S ribosomal protein L14
432	 39.94	-1	528420..528737	+	105	148652249	rplX	PsycPRwf_0437	-	50S ribosomal protein L24
433	 43.58	0	528759..529295	+	178	148652250	rplE	PsycPRwf_0438	-	50S ribosomal protein L5
434	 43.46	0	529308..529613	+	101	148652251	rpsN	PsycPRwf_0439	-	30S ribosomal protein S14
435	 45.11	0	529626..530024	+	132	148652252	rpsH	PsycPRwf_0440	-	30S ribosomal protein S8
436	 41.39	-1	530219..530752	+	177	148652253	rplF	PsycPRwf_0441	-	50S ribosomal protein L6
437	 47.01	0	530764..531114	+	116	148652254	rplR	PsycPRwf_0442	-	50S ribosomal protein L18
438	 43.17	0	531117..531614	+	165	148652255	rpsE	PsycPRwf_0443	-	30S ribosomal protein S5
439	 43.33	0	531648..531827	+	59	148652256	rpmD	PsycPRwf_0444	-	50S ribosomal protein L30
440	 44.66	0	531827..532285	+	152	148652257	rplO	PsycPRwf_0445	-	50S ribosomal protein L15
441	 42.79	0	532291..533622	+	443	148652258	secY	PsycPRwf_0446	-	preprotein translocase subunit SecY
442	 43.98	0	534035..534391	+	118	148652259	rpsM	PsycPRwf_0447	-	30S ribosomal protein S13
443	 47.33	0	534412..534804	+	130	148652260	-	PsycPRwf_0448	-	30S ribosomal protein S11
444	 41.90	-1	534917..535558	+	213	148652261	rpsD	PsycPRwf_0449	-	30S ribosomal protein S4
445	 43.45	0	535598..536605	+	335	148652262	-	PsycPRwf_0450	-	DNA-directed RNA polymerase subunit alpha
446	 45.83	0	536626..536985	+	119	148652263	rplQ	PsycPRwf_0451	-	50S ribosomal protein L17
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.