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Psychrobacter sp. PRwf-1, complete genome - 1..2978976 2370 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 340 50.47 +1 415573..417720 - 715 148652157 - PsycPRwf_0345 - phosphate acetyltransferase 341 47.71 0 417845..419047 - 400 148652158 - PsycPRwf_0346 - acetate kinase 342 40.29 -1 419472..419816 + 114 148652159 - PsycPRwf_0347 - hypothetical protein 343 48.06 0 419924..421261 + 445 148652160 - PsycPRwf_0348 - diaminopimelate decarboxylase 344 50.45 +1 421543..422424 + 293 148652161 - PsycPRwf_0349 - diaminopimelate epimerase 345 52.05 +1 422454..423479 + 341 148652162 - PsycPRwf_0350 - phage integrase family protein 346 52.32 +1 423586..424470 - 294 148652163 - PsycPRwf_0351 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 347 46.28 0 424961..426706 + 581 148652164 - PsycPRwf_0352 - RNA polymerase, sigma 54 subunit, RpoN 348 42.61 0 427202..427600 + 132 148652165 - PsycPRwf_0353 - sigma 54 modulation protein/ribosomal protein S30EA 349 44.28 0 427837..428037 - 66 148652166 - PsycPRwf_0354 - thiamine biosynthesis protein ThiS 350 48.91 0 428088..428453 - 121 148652167 - PsycPRwf_0355 - hypothetical protein 351 48.08 0 428621..429739 - 372 148652168 - PsycPRwf_0356 - RNA polymerase factor sigma-32 352 46.93 0 429796..430170 - 124 148652169 - PsycPRwf_0357 - SirA family protein 353 48.88 0 430615..432216 + 533 148652170 - PsycPRwf_0358 - peptidase M48, Ste24p 354 42.67 0 432252..432701 - 149 148652171 - PsycPRwf_0359 - GatB/Yqey domain-containing protein 355 44.44 0 432986..433201 - 71 148652172 rpsU PsycPRwf_0360 - 30S ribosomal protein S21 356 53.29 +2 433867..434292 + 141 148652173 - PsycPRwf_0361 - hypothetical protein 357 50.17 +1 434455..435042 + 195 148652174 - PsycPRwf_0362 - cytochrome c5-like protein 358 48.56 0 435335..436378 + 347 148652175 - PsycPRwf_0363 - metalloendopeptidase glycoprotease family 359 50.54 +1 436392..436763 + 123 148652176 - PsycPRwf_0364 - CrcB protein 360 49.48 +1 436782..437741 - 319 148652177 - PsycPRwf_0365 - LysR family transcriptional regulator 361 44.32 0 438256..439629 + 457 148652178 - PsycPRwf_0366 - sodium:dicarboxylate symporter 362 41.64 -1 439840..440946 + 368 148652179 - PsycPRwf_0367 - IS605 family transposase OrfB 363 49.41 +1 440960..441724 - 254 148652180 - PsycPRwf_0368 - hypothetical protein 364 46.67 0 442104..443303 + 399 148652181 - PsycPRwf_0369 - Na+/H+ antiporter NhaA 365 48.72 0 443472..444017 + 181 148652182 - PsycPRwf_0370 - hypothetical protein 366 43.59 0 444315..444704 + 129 148652183 - PsycPRwf_0371 - hypothetical protein 367 46.20 0 445772..447574 + 600 148652184 - PsycPRwf_0372 - GTP-binding protein LepA 368 45.46 0 447733..448878 + 381 148652185 - PsycPRwf_0373 - signal peptidase I 369 46.92 0 449067..449846 + 259 148652186 - PsycPRwf_0374 - ribonuclease III 370 44.80 0 449984..451003 + 339 148652187 era PsycPRwf_0375 - GTP-binding protein Era 371 45.20 0 451091..451798 + 235 148652188 - PsycPRwf_0376 - DNA repair protein RecO 372 46.61 0 451899..452666 + 255 148652189 - PsycPRwf_0377 - pyridoxal phosphate biosynthetic protein PdxJ 373 38.69 -2 452719..453372 - 217 148652190 - PsycPRwf_0378 - hypothetical protein 374 45.46 0 453804..455015 + 403 148652191 - PsycPRwf_0379 - OmpA/MotB domain-containing protein 375 42.69 0 455216..457063 + 615 148652192 - PsycPRwf_0380 - GTP-binding protein TypA 376 41.44 -1 457404..457835 + 143 148652193 - PsycPRwf_0381 - large conductance mechanosensitive channel protein 377 44.48 0 457938..458861 - 307 148652194 - PsycPRwf_0382 - formamidopyrimidine-DNA glycosylase 378 46.33 0 458864..461557 - 897 148652195 - PsycPRwf_0383 - (p)ppGpp synthetase I, SpoT/RelA 379 48.55 0 461801..463351 - 516 148652196 rumA PsycPRwf_0384 - 23S rRNA 5-methyluridine methyltransferase 380 45.19 0 463603..464412 - 269 148652197 - PsycPRwf_0385 - hypothetical protein 381 48.63 0 464533..465480 - 315 148652198 cysM PsycPRwf_0386 - cysteine synthase B 382 47.64 0 465660..469133 + 1157 148652199 - PsycPRwf_0387 - multi-sensor hybrid histidine kinase 383 45.41 0 469186..470013 + 275 148652200 - PsycPRwf_0388 - enoyl-CoA hydratase 384 45.60 0 470331..471545 + 404 148652201 - PsycPRwf_0389 - Bcr/CflA subfamily drug resistance transporter 385 51.42 +1 471724..472215 - 163 148652202 - PsycPRwf_0390 - hypothetical protein 386 46.16 0 472691..473485 + 264 148652203 - PsycPRwf_0391 - cobyrinic acid a,c-diamide synthase 387 48.76 0 473546..474109 + 187 148652204 - PsycPRwf_0392 - hypothetical protein 388 48.02 0 474310..476964 + 884 148652205 - PsycPRwf_0393 - DNA topoisomerase I 389 45.27 0 477065..478078 - 337 148652206 - PsycPRwf_0394 - hypothetical protein 390 47.57 0 478378..481200 - 940 148652207 - PsycPRwf_0395 - 1A family penicillin-binding protein 391 47.45 0 481937..482935 + 332 148652208 - PsycPRwf_0396 - Tfp pilus assembly protein ATPase PilM-like protein 392 47.76 0 483001..483513 + 170 148652209 - PsycPRwf_0397 - fimbrial assembly family protein 393 48.01 0 483523..484932 + 469 148652210 - PsycPRwf_0398 - Tfp pilus assembly protein PilO-like protein 394 46.14 0 485000..486928 + 642 148652211 - PsycPRwf_0399 - type IV pilus secretin PilQ 395 47.33 0 487190..487732 + 180 148652212 - PsycPRwf_0400 - shikimate kinase 396 49.59 +1 487825..488925 + 366 148652213 - PsycPRwf_0401 - 3-dehydroquinate synthase 397 45.05 0 489039..490088 + 349 148652214 - PsycPRwf_0402 - hypothetical protein 398 49.36 +1 490907..495430 + 1507 148652215 gltB PsycPRwf_0403 - glutamate synthase subunit alpha 399 48.63 0 495647..497065 + 472 148652216 gltD PsycPRwf_0404 - glutamate synthase subunit beta 400 46.30 0 497448..498095 + 215 148652217 - PsycPRwf_0405 - carbonic anhydrase 401 43.59 0 498216..498761 + 181 148652218 - PsycPRwf_0406 - lactoylglutathione lyase 402 48.10 0 498975..499922 + 315 148652219 - PsycPRwf_0407 - MscS mechanosensitive ion channel 403 46.98 0 500026..500472 - 148 148652220 - PsycPRwf_0408 - cytochrome c, class II 404 49.45 +1 500692..501690 - 332 148652221 - PsycPRwf_0409 - coproporphyrinogen III oxidase 405 45.85 0 501751..502437 - 228 148652222 - PsycPRwf_0410 - GTP cyclohydrolase II 406 48.90 0 503074..505206 + 710 148652223 - PsycPRwf_0411 - 1-deoxy-D-xylulose-5-phosphate synthase 407 47.77 0 505361..506191 + 276 148652224 - PsycPRwf_0412 - inositol-phosphate phosphatase 408 44.09 0 506319..506969 + 216 148652225 - PsycPRwf_0413 - hypothetical protein 409 46.44 0 507055..507939 - 294 148652226 - PsycPRwf_0414 - formyltetrahydrofolate deformylase 410 39.84 -1 508355..510613 + 752 148652227 - PsycPRwf_0415 - hypothetical protein 411 34.44 -2 510661..512100 + 479 148652228 - PsycPRwf_0416 - hypothetical protein 412 48.26 0 512539..514059 - 506 148652229 gatB PsycPRwf_0417 - aspartyl/glutamyl-tRNA amidotransferase subunit B 413 49.80 +1 514059..515558 - 499 148652230 - PsycPRwf_0418 - glutamyl-tRNA(Gln) amidotransferase, A subunit 414 48.38 0 515768..516106 - 112 148652231 - PsycPRwf_0419 - glutamyl-tRNA(Gln) amidotransferase, C subunit 415 48.49 0 516770..517798 + 342 148652232 - PsycPRwf_0420 - cell shape determining protein MreB 416 47.56 0 517821..518741 + 306 148652233 - PsycPRwf_0421 - rod shape-determining protein MreC 417 44.79 0 518955..519443 + 162 148652234 - PsycPRwf_0422 - hypothetical protein 418 50.61 +1 519525..520184 + 219 148652235 - PsycPRwf_0423 - maf protein 419 47.99 0 520354..522195 + 613 148652236 - PsycPRwf_0424 - ribonuclease 420 48.08 0 522771..523082 + 103 148652237 rpsJ PsycPRwf_0425 - 30S ribosomal protein S10 421 47.57 0 523177..523815 + 212 148652238 rplC PsycPRwf_0426 - 50S ribosomal protein L3 422 46.27 0 523830..524432 + 200 148652239 rplD PsycPRwf_0427 - 50S ribosomal protein L4 423 39.60 -1 524429..524779 + 116 148652240 rplW PsycPRwf_0428 - 50S ribosomal protein L23 424 45.49 0 524791..525621 + 276 148652241 rplB PsycPRwf_0429 - 50S ribosomal protein L2 425 42.75 0 525633..525908 + 91 148652242 rpsS PsycPRwf_0430 - 30S ribosomal protein S19 426 43.94 0 525919..526248 + 109 148652243 rplV PsycPRwf_0431 - 50S ribosomal protein L22 427 43.82 0 526252..526995 + 247 148652244 rpsC PsycPRwf_0432 - 30S ribosomal protein S3 428 44.20 0 526999..527412 + 137 148652245 rplP PsycPRwf_0433 - 50S ribosomal protein L16 429 45.13 0 527412..527606 + 64 148652246 - PsycPRwf_0434 - 50S ribosomal protein L29 430 38.89 -2 527606..527893 + 95 148652247 - PsycPRwf_0435 - ribosomal protein S17 431 43.36 0 528042..528410 + 122 148652248 rplN PsycPRwf_0436 - 50S ribosomal protein L14 432 39.94 -1 528420..528737 + 105 148652249 rplX PsycPRwf_0437 - 50S ribosomal protein L24 433 43.58 0 528759..529295 + 178 148652250 rplE PsycPRwf_0438 - 50S ribosomal protein L5 434 43.46 0 529308..529613 + 101 148652251 rpsN PsycPRwf_0439 - 30S ribosomal protein S14 435 45.11 0 529626..530024 + 132 148652252 rpsH PsycPRwf_0440 - 30S ribosomal protein S8 436 41.39 -1 530219..530752 + 177 148652253 rplF PsycPRwf_0441 - 50S ribosomal protein L6 437 47.01 0 530764..531114 + 116 148652254 rplR PsycPRwf_0442 - 50S ribosomal protein L18 438 43.17 0 531117..531614 + 165 148652255 rpsE PsycPRwf_0443 - 30S ribosomal protein S5 439 43.33 0 531648..531827 + 59 148652256 rpmD PsycPRwf_0444 - 50S ribosomal protein L30 45.93 MEAN 3.38 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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