IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
301	 47.72	0	364905..365627	-	240	148652118	-	PsycPRwf_0306	-	ATP-dependent Clp protease, proteolytic subunit ClpP
302	 44.69	0	366062..367399	-	445	148652119	tig	PsycPRwf_0307	-	trigger factor
303	 50.92	+1	367799..368452	-	217	148652120	-	PsycPRwf_0308	-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
304	 44.60	0	369362..369991	+	209	148652121	-	PsycPRwf_0309	-	superoxide dismutase
305	 47.14	0	370090..370929	-	279	148652122	-	PsycPRwf_0310	-	hypothetical protein
306	 49.34	+1	371286..372641	+	451	148652123	-	PsycPRwf_0311	-	glutamyl-tRNA reductase
307	 43.16	0	372794..373414	-	206	148652124	-	PsycPRwf_0312	-	rhomboid family protein
308	 45.85	0	373860..375473	+	537	148652125	-	PsycPRwf_0313	-	OmpA/MotB domain-containing protein
309	 51.35	+1	375637..376707	-	356	148652126	-	PsycPRwf_0314	-	beta-hexosaminidase
310	 46.65	0	376938..379145	+	735	148652127	-	PsycPRwf_0315	-	carboxyl-terminal protease
311	 43.14	0	380014..380217	-	67	148652128	-	PsycPRwf_0316	-	CsbD family protein
312	 43.69	0	380341..381093	+	250	148652129	-	PsycPRwf_0317	-	transposase, IS4 family protein
313	 48.89	0	382403..384067	-	554	148652130	-	PsycPRwf_0318	-	integral membrane sensor signal transduction histidine kinase
314	 46.73	0	384181..384852	-	223	148652131	-	PsycPRwf_0319	-	two component transcriptional regulator
315	 48.03	0	385199..385756	+	185	148652132	-	PsycPRwf_0320	-	hypothetical protein
316	 47.98	0	385909..386652	-	247	148652133	-	PsycPRwf_0321	-	aminomethyltransferase related to GcvT-like protein
317	 44.73	0	386898..387248	+	116	148652134	-	PsycPRwf_0322	-	alkylphosphonate utilization operon protein PhnA
318	 44.07	0	387399..388283	-	294	148652135	-	PsycPRwf_0323	-	DegV family protein
319	 44.05	0	388609..389718	+	369	148652136	-	PsycPRwf_0324	-	hypothetical protein
320	 51.65	+1	389854..391644	-	596	148652137	-	PsycPRwf_0325	-	ABC transporter related
321	 50.68	+1	391637..393475	-	612	148652138	-	PsycPRwf_0326	-	cysteine ABC transporter permease/ATP-binding protein
322	 46.47	0	394133..395731	+	532	148652139	-	PsycPRwf_0327	-	cytochrome bd ubiquinol oxidase, subunit I
323	 48.33	0	395721..396860	+	379	148652140	-	PsycPRwf_0328	-	cytochrome d ubiquinol oxidase, subunit II
324	 42.31	-1	396887..397042	+	51	148652141	-	PsycPRwf_0329	-	cyd operon protein YbgT
325	 48.16	0	397233..398561	+	442	148652142	-	PsycPRwf_0330	-	glutamate-1-semialdehyde-2,1-aminomutase
326	 47.27	0	398881..400401	+	506	148652143	-	PsycPRwf_0331	-	Ppx/GppA phosphatase
327	 47.21	0	400454..401260	+	268	148652144	-	PsycPRwf_0332	-	acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
328	 43.81	0	401654..401863	+	69	148652145	-	PsycPRwf_0333	-	cold-shock DNA-binding domain-containing protein
329	 49.55	+1	402172..404508	+	778	148652146	-	PsycPRwf_0334	-	oxidoreductase alpha (molybdopterin) subunit
330	 51.67	+1	404540..405679	+	379	148652147	-	PsycPRwf_0335	-	formate dehydrogenase, subunit FdhD
331	 50.51	+1	405792..407369	+	525	148652148	-	PsycPRwf_0336	-	tRNA(Ile)-lysidine synthetase
332	 48.53	0	407667..408515	+	282	148652149	-	PsycPRwf_0337	-	pyrroline-5-carboxylate reductase
333	 42.68	0	408629..409195	+	188	148652150	-	PsycPRwf_0338	-	protein of unknown function YGGT
334	 47.51	0	410010..410672	+	220	148652151	-	PsycPRwf_0339	-	RDD domain-containing protein
335	 42.71	0	410910..411389	+	159	148652152	-	PsycPRwf_0340	-	hemerythrin HHE cation binding domain-containing protein
336	 49.50	+1	411692..412792	+	366	148652153	-	PsycPRwf_0341	-	N-ethylmaleimide reductase
337	 47.97	0	412914..413651	-	245	148652154	-	PsycPRwf_0342	-	pantothenate kinase
338	 46.91	0	413879..414283	-	134	148652155	-	PsycPRwf_0343	-	iojap-like protein
339	 48.16	0	414449..415264	-	271	148652156	-	PsycPRwf_0344	-	nicotinate (nicotinamide) nucleotide adenylyltransferase
340	 50.47	+1	415573..417720	-	715	148652157	-	PsycPRwf_0345	-	phosphate acetyltransferase
341	 47.71	0	417845..419047	-	400	148652158	-	PsycPRwf_0346	-	acetate kinase
342	 40.29	-1	419472..419816	+	114	148652159	-	PsycPRwf_0347	-	hypothetical protein
343	 48.06	0	419924..421261	+	445	148652160	-	PsycPRwf_0348	-	diaminopimelate decarboxylase
344	 50.45	+1	421543..422424	+	293	148652161	-	PsycPRwf_0349	-	diaminopimelate epimerase
345	 52.05	+1	422454..423479	+	341	148652162	-	PsycPRwf_0350	-	phage integrase family protein
346	 52.32	+1	423586..424470	-	294	148652163	-	PsycPRwf_0351	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
347	 46.28	0	424961..426706	+	581	148652164	-	PsycPRwf_0352	-	RNA polymerase, sigma 54 subunit, RpoN
348	 42.61	0	427202..427600	+	132	148652165	-	PsycPRwf_0353	-	sigma 54 modulation protein/ribosomal protein S30EA
349	 44.28	0	427837..428037	-	66	148652166	-	PsycPRwf_0354	-	thiamine biosynthesis protein ThiS
350	 48.91	0	428088..428453	-	121	148652167	-	PsycPRwf_0355	-	hypothetical protein
351	 48.08	0	428621..429739	-	372	148652168	-	PsycPRwf_0356	-	RNA polymerase factor sigma-32
352	 46.93	0	429796..430170	-	124	148652169	-	PsycPRwf_0357	-	SirA family protein
353	 48.88	0	430615..432216	+	533	148652170	-	PsycPRwf_0358	-	peptidase M48, Ste24p
354	 42.67	0	432252..432701	-	149	148652171	-	PsycPRwf_0359	-	GatB/Yqey domain-containing protein
355	 44.44	0	432986..433201	-	71	148652172	rpsU	PsycPRwf_0360	-	30S ribosomal protein S21
356	 53.29	+2	433867..434292	+	141	148652173	-	PsycPRwf_0361	-	hypothetical protein
357	 50.17	+1	434455..435042	+	195	148652174	-	PsycPRwf_0362	-	cytochrome c5-like protein
358	 48.56	0	435335..436378	+	347	148652175	-	PsycPRwf_0363	-	metalloendopeptidase glycoprotease family
359	 50.54	+1	436392..436763	+	123	148652176	-	PsycPRwf_0364	-	CrcB protein
360	 49.48	+1	436782..437741	-	319	148652177	-	PsycPRwf_0365	-	LysR family transcriptional regulator
361	 44.32	0	438256..439629	+	457	148652178	-	PsycPRwf_0366	-	sodium:dicarboxylate symporter
362	 41.64	-1	439840..440946	+	368	148652179	-	PsycPRwf_0367	-	IS605 family transposase OrfB
363	 49.41	+1	440960..441724	-	254	148652180	-	PsycPRwf_0368	-	hypothetical protein
364	 46.67	0	442104..443303	+	399	148652181	-	PsycPRwf_0369	-	Na+/H+ antiporter NhaA
365	 48.72	0	443472..444017	+	181	148652182	-	PsycPRwf_0370	-	hypothetical protein
366	 43.59	0	444315..444704	+	129	148652183	-	PsycPRwf_0371	-	hypothetical protein
367	 46.20	0	445772..447574	+	600	148652184	-	PsycPRwf_0372	-	GTP-binding protein LepA
368	 45.46	0	447733..448878	+	381	148652185	-	PsycPRwf_0373	-	signal peptidase I
369	 46.92	0	449067..449846	+	259	148652186	-	PsycPRwf_0374	-	ribonuclease III
370	 44.80	0	449984..451003	+	339	148652187	era	PsycPRwf_0375	-	GTP-binding protein Era
371	 45.20	0	451091..451798	+	235	148652188	-	PsycPRwf_0376	-	DNA repair protein RecO
372	 46.61	0	451899..452666	+	255	148652189	-	PsycPRwf_0377	-	pyridoxal phosphate biosynthetic protein PdxJ
373	 38.69	-2	452719..453372	-	217	148652190	-	PsycPRwf_0378	-	hypothetical protein
374	 45.46	0	453804..455015	+	403	148652191	-	PsycPRwf_0379	-	OmpA/MotB domain-containing protein
375	 42.69	0	455216..457063	+	615	148652192	-	PsycPRwf_0380	-	GTP-binding protein TypA
376	 41.44	-1	457404..457835	+	143	148652193	-	PsycPRwf_0381	-	large conductance mechanosensitive channel protein
377	 44.48	0	457938..458861	-	307	148652194	-	PsycPRwf_0382	-	formamidopyrimidine-DNA glycosylase
378	 46.33	0	458864..461557	-	897	148652195	-	PsycPRwf_0383	-	(p)ppGpp synthetase I, SpoT/RelA
379	 48.55	0	461801..463351	-	516	148652196	rumA	PsycPRwf_0384	-	23S rRNA 5-methyluridine methyltransferase
380	 45.19	0	463603..464412	-	269	148652197	-	PsycPRwf_0385	-	hypothetical protein
381	 48.63	0	464533..465480	-	315	148652198	cysM	PsycPRwf_0386	-	cysteine synthase B
382	 47.64	0	465660..469133	+	1157	148652199	-	PsycPRwf_0387	-	multi-sensor hybrid histidine kinase
383	 45.41	0	469186..470013	+	275	148652200	-	PsycPRwf_0388	-	enoyl-CoA hydratase
384	 45.60	0	470331..471545	+	404	148652201	-	PsycPRwf_0389	-	Bcr/CflA subfamily drug resistance transporter
385	 51.42	+1	471724..472215	-	163	148652202	-	PsycPRwf_0390	-	hypothetical protein
386	 46.16	0	472691..473485	+	264	148652203	-	PsycPRwf_0391	-	cobyrinic acid a,c-diamide synthase
387	 48.76	0	473546..474109	+	187	148652204	-	PsycPRwf_0392	-	hypothetical protein
388	 48.02	0	474310..476964	+	884	148652205	-	PsycPRwf_0393	-	DNA topoisomerase I
389	 45.27	0	477065..478078	-	337	148652206	-	PsycPRwf_0394	-	hypothetical protein
390	 47.57	0	478378..481200	-	940	148652207	-	PsycPRwf_0395	-	1A family penicillin-binding protein
391	 47.45	0	481937..482935	+	332	148652208	-	PsycPRwf_0396	-	Tfp pilus assembly protein ATPase PilM-like protein
392	 47.76	0	483001..483513	+	170	148652209	-	PsycPRwf_0397	-	fimbrial assembly family protein
393	 48.01	0	483523..484932	+	469	148652210	-	PsycPRwf_0398	-	Tfp pilus assembly protein PilO-like protein
394	 46.14	0	485000..486928	+	642	148652211	-	PsycPRwf_0399	-	type IV pilus secretin PilQ
395	 47.33	0	487190..487732	+	180	148652212	-	PsycPRwf_0400	-	shikimate kinase
396	 49.59	+1	487825..488925	+	366	148652213	-	PsycPRwf_0401	-	3-dehydroquinate synthase
397	 45.05	0	489039..490088	+	349	148652214	-	PsycPRwf_0402	-	hypothetical protein
398	 49.36	+1	490907..495430	+	1507	148652215	gltB	PsycPRwf_0403	-	glutamate synthase subunit alpha
399	 48.63	0	495647..497065	+	472	148652216	gltD	PsycPRwf_0404	-	glutamate synthase subunit beta
400	 46.30	0	497448..498095	+	215	148652217	-	PsycPRwf_0405	-	carbonic anhydrase
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.