IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
257	 46.35	0	308608..308991	+	127	148652074	-	PsycPRwf_0262	-	succinate dehydrogenase, hydrophobic membrane anchor
258	 46.79	0	309198..311048	+	616	148652075	sdhA	PsycPRwf_0263	-	succinate dehydrogenase flavoprotein subunit
259	 45.99	0	311177..311887	+	236	148652076	sdhB	PsycPRwf_0264	-	succinate dehydrogenase iron-sulfur subunit
260	 39.74	-1	312460..313161	-	233	148652077	-	PsycPRwf_0265	-	IS1 transposase
261	 47.58	0	313445..316321	+	958	148652078	kgd	PsycPRwf_0266	-	alpha-ketoglutarate decarboxylase
262	 47.64	0	316529..317758	+	409	148652079	-	PsycPRwf_0267	-	2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase
263	 46.78	0	317980..319437	+	485	148652080	-	PsycPRwf_0268	-	dihydrolipoamide dehydrogenase
264	 44.19	0	319653..320822	+	389	148652081	sucC	PsycPRwf_0269	-	succinyl-CoA synthetase subunit beta
265	 46.80	0	320880..321755	+	291	148652082	-	PsycPRwf_0270	-	succinyl-CoA synthetase, alpha subunit
266	 47.33	0	321963..322841	+	292	148652083	-	PsycPRwf_0271	-	nucleotidyl transferase
267	 49.65	+1	322978..324669	+	563	148652084	-	PsycPRwf_0272	-	glucose-6-phosphate isomerase
268	 48.99	0	324762..326102	+	446	148652085	-	PsycPRwf_0273	-	UDP-glucose/GDP-mannose dehydrogenase, dimerisation
269	 48.43	0	326234..327697	-	487	148652086	-	PsycPRwf_0274	-	phosphomannomutase
270	 47.28	0	327789..329057	-	422	148652087	-	PsycPRwf_0275	-	UDP-glucose/GDP-mannose dehydrogenase, dimerisation
271	 49.08	0	329219..330088	+	289	148652088	mazG	PsycPRwf_0276	-	nucleoside triphosphate pyrophosphohydrolase
272	 49.08	0	330054..330434	+	126	148652089	-	PsycPRwf_0277	-	helix-hairpin-helix repeat-containing competence protein ComEA
273	 46.89	0	330478..331008	-	176	148652090	-	PsycPRwf_0278	-	hypothetical protein
274	 49.65	+1	331231..333099	-	622	148652091	-	PsycPRwf_0279	-	Na+/solute symporter
275	 44.06	0	333104..333364	-	86	148652092	-	PsycPRwf_0280	-	membrane protein-like protein
276	 46.72	0	333983..335491	+	502	148652093	-	PsycPRwf_0281	-	amino acid carrier protein
277	 49.52	+1	335602..337269	-	555	148652094	-	PsycPRwf_0282	-	electron-transferring-flavoprotein dehydrogenase
278	 47.31	0	337754..338404	+	216	148652095	-	PsycPRwf_0283	-	hypothetical protein
279	 51.52	+1	338477..339499	+	340	148652096	-	PsycPRwf_0284	-	glutamate racemase
280	 47.08	0	339673..339963	+	96	148652097	-	PsycPRwf_0285	-	hypothetical protein
281	 50.60	+1	340063..341487	-	474	148652098	-	PsycPRwf_0286	-	lytic murein transglycosylase
282	 48.65	0	341796..342761	-	321	148652099	-	PsycPRwf_0287	-	aldose 1-epimerase
283	 48.05	0	342832..343524	-	230	148652100	-	PsycPRwf_0288	-	thiopurine S-methyltransferase
284	 44.32	0	343681..344208	-	175	148652101	-	PsycPRwf_0289	-	peptide methionine sulfoxide reductase
285	 47.76	0	344360..345184	+	274	148652102	-	PsycPRwf_0290	-	putative methyltransferase
286	 47.65	0	345273..346334	+	353	148652103	-	PsycPRwf_0291	-	putative methyltransferase
287	 47.57	0	346462..347634	+	390	148652104	-	PsycPRwf_0292	-	hypothetical protein
288	 45.02	0	347669..347899	-	76	148652105	-	PsycPRwf_0293	-	hypothetical protein
289	 46.67	0	348184..350013	+	609	148652106	argS	PsycPRwf_0294	-	arginyl-tRNA synthetase
290	 48.79	0	350161..350988	+	275	148652107	-	PsycPRwf_0295	-	sporulation domain-containing protein
291	 48.48	0	351076..351834	+	252	148652108	-	PsycPRwf_0296	-	transcriptional regulator IclR-like protein
292	 49.68	+1	351928..352857	-	309	148652109	-	PsycPRwf_0297	-	3-hydroxyisobutyrate dehydrogenase
293	 50.16	+1	352971..354254	-	427	148652110	-	PsycPRwf_0298	-	enoyl-CoA hydratase/isomerase
294	 49.43	+1	354304..355086	-	260	148652111	-	PsycPRwf_0299	-	enoyl-CoA hydratase
295	 49.70	+1	355277..356443	-	388	148652112	-	PsycPRwf_0300	-	acyl-CoA dehydrogenase domain-containing protein
296	 49.53	+1	356685..358172	-	495	148652113	-	PsycPRwf_0301	-	methylmalonate-semialdehyde dehydrogenase
297	 51.71	+1	358463..360475	-	670	148652114	-	PsycPRwf_0302	-	propionyl-CoA synthetase
298	 48.64	0	360701..361909	-	402	148652115	-	PsycPRwf_0303	-	major facilitator transporter
299	 47.31	0	362108..363037	-	309	148652116	-	PsycPRwf_0304	-	short-chain dehydrogenase/reductase SDR
300	 45.23	0	363423..364700	-	425	148652117	clpX	PsycPRwf_0305	-	ATP-dependent protease ATP-binding subunit
301	 47.72	0	364905..365627	-	240	148652118	-	PsycPRwf_0306	-	ATP-dependent Clp protease, proteolytic subunit ClpP
302	 44.69	0	366062..367399	-	445	148652119	tig	PsycPRwf_0307	-	trigger factor
303	 50.92	+1	367799..368452	-	217	148652120	-	PsycPRwf_0308	-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
304	 44.60	0	369362..369991	+	209	148652121	-	PsycPRwf_0309	-	superoxide dismutase
305	 47.14	0	370090..370929	-	279	148652122	-	PsycPRwf_0310	-	hypothetical protein
306	 49.34	+1	371286..372641	+	451	148652123	-	PsycPRwf_0311	-	glutamyl-tRNA reductase
307	 43.16	0	372794..373414	-	206	148652124	-	PsycPRwf_0312	-	rhomboid family protein
308	 45.85	0	373860..375473	+	537	148652125	-	PsycPRwf_0313	-	OmpA/MotB domain-containing protein
309	 51.35	+1	375637..376707	-	356	148652126	-	PsycPRwf_0314	-	beta-hexosaminidase
310	 46.65	0	376938..379145	+	735	148652127	-	PsycPRwf_0315	-	carboxyl-terminal protease
311	 43.14	0	380014..380217	-	67	148652128	-	PsycPRwf_0316	-	CsbD family protein
312	 43.69	0	380341..381093	+	250	148652129	-	PsycPRwf_0317	-	transposase, IS4 family protein
313	 48.89	0	382403..384067	-	554	148652130	-	PsycPRwf_0318	-	integral membrane sensor signal transduction histidine kinase
314	 46.73	0	384181..384852	-	223	148652131	-	PsycPRwf_0319	-	two component transcriptional regulator
315	 48.03	0	385199..385756	+	185	148652132	-	PsycPRwf_0320	-	hypothetical protein
316	 47.98	0	385909..386652	-	247	148652133	-	PsycPRwf_0321	-	aminomethyltransferase related to GcvT-like protein
317	 44.73	0	386898..387248	+	116	148652134	-	PsycPRwf_0322	-	alkylphosphonate utilization operon protein PhnA
318	 44.07	0	387399..388283	-	294	148652135	-	PsycPRwf_0323	-	DegV family protein
319	 44.05	0	388609..389718	+	369	148652136	-	PsycPRwf_0324	-	hypothetical protein
320	 51.65	+1	389854..391644	-	596	148652137	-	PsycPRwf_0325	-	ABC transporter related
321	 50.68	+1	391637..393475	-	612	148652138	-	PsycPRwf_0326	-	cysteine ABC transporter permease/ATP-binding protein
322	 46.47	0	394133..395731	+	532	148652139	-	PsycPRwf_0327	-	cytochrome bd ubiquinol oxidase, subunit I
323	 48.33	0	395721..396860	+	379	148652140	-	PsycPRwf_0328	-	cytochrome d ubiquinol oxidase, subunit II
324	 42.31	-1	396887..397042	+	51	148652141	-	PsycPRwf_0329	-	cyd operon protein YbgT
325	 48.16	0	397233..398561	+	442	148652142	-	PsycPRwf_0330	-	glutamate-1-semialdehyde-2,1-aminomutase
326	 47.27	0	398881..400401	+	506	148652143	-	PsycPRwf_0331	-	Ppx/GppA phosphatase
327	 47.21	0	400454..401260	+	268	148652144	-	PsycPRwf_0332	-	acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
328	 43.81	0	401654..401863	+	69	148652145	-	PsycPRwf_0333	-	cold-shock DNA-binding domain-containing protein
329	 49.55	+1	402172..404508	+	778	148652146	-	PsycPRwf_0334	-	oxidoreductase alpha (molybdopterin) subunit
330	 51.67	+1	404540..405679	+	379	148652147	-	PsycPRwf_0335	-	formate dehydrogenase, subunit FdhD
331	 50.51	+1	405792..407369	+	525	148652148	-	PsycPRwf_0336	-	tRNA(Ile)-lysidine synthetase
332	 48.53	0	407667..408515	+	282	148652149	-	PsycPRwf_0337	-	pyrroline-5-carboxylate reductase
333	 42.68	0	408629..409195	+	188	148652150	-	PsycPRwf_0338	-	protein of unknown function YGGT
334	 47.51	0	410010..410672	+	220	148652151	-	PsycPRwf_0339	-	RDD domain-containing protein
335	 42.71	0	410910..411389	+	159	148652152	-	PsycPRwf_0340	-	hemerythrin HHE cation binding domain-containing protein
336	 49.50	+1	411692..412792	+	366	148652153	-	PsycPRwf_0341	-	N-ethylmaleimide reductase
337	 47.97	0	412914..413651	-	245	148652154	-	PsycPRwf_0342	-	pantothenate kinase
338	 46.91	0	413879..414283	-	134	148652155	-	PsycPRwf_0343	-	iojap-like protein
339	 48.16	0	414449..415264	-	271	148652156	-	PsycPRwf_0344	-	nicotinate (nicotinamide) nucleotide adenylyltransferase
340	 50.47	+1	415573..417720	-	715	148652157	-	PsycPRwf_0345	-	phosphate acetyltransferase
341	 47.71	0	417845..419047	-	400	148652158	-	PsycPRwf_0346	-	acetate kinase
342	 40.29	-1	419472..419816	+	114	148652159	-	PsycPRwf_0347	-	hypothetical protein
343	 48.06	0	419924..421261	+	445	148652160	-	PsycPRwf_0348	-	diaminopimelate decarboxylase
344	 50.45	+1	421543..422424	+	293	148652161	-	PsycPRwf_0349	-	diaminopimelate epimerase
345	 52.05	+1	422454..423479	+	341	148652162	-	PsycPRwf_0350	-	phage integrase family protein
346	 52.32	+1	423586..424470	-	294	148652163	-	PsycPRwf_0351	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
347	 46.28	0	424961..426706	+	581	148652164	-	PsycPRwf_0352	-	RNA polymerase, sigma 54 subunit, RpoN
348	 42.61	0	427202..427600	+	132	148652165	-	PsycPRwf_0353	-	sigma 54 modulation protein/ribosomal protein S30EA
349	 44.28	0	427837..428037	-	66	148652166	-	PsycPRwf_0354	-	thiamine biosynthesis protein ThiS
350	 48.91	0	428088..428453	-	121	148652167	-	PsycPRwf_0355	-	hypothetical protein
351	 48.08	0	428621..429739	-	372	148652168	-	PsycPRwf_0356	-	RNA polymerase factor sigma-32
352	 46.93	0	429796..430170	-	124	148652169	-	PsycPRwf_0357	-	SirA family protein
353	 48.88	0	430615..432216	+	533	148652170	-	PsycPRwf_0358	-	peptidase M48, Ste24p
354	 42.67	0	432252..432701	-	149	148652171	-	PsycPRwf_0359	-	GatB/Yqey domain-containing protein
355	 44.44	0	432986..433201	-	71	148652172	rpsU	PsycPRwf_0360	-	30S ribosomal protein S21
356	 53.29	+2	433867..434292	+	141	148652173	-	PsycPRwf_0361	-	hypothetical protein
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.